Guide to the Human Genome
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Name: MDM2 Sequence: fasta or formatted (172aa) NCBI GI: 89993693
Description:

mouse double minute 2 homolog isoform MDM2d

Referenced in:

p53 Pathway
Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [452aa] mouse double minute 2 homolog isoform MDM2f
alt prot [444aa] mouse double minute 2 homolog isoform MDM2g
alt prot [442aa] mouse double minute 2 homolog isoform MDM2h
alt prot [295aa] mouse double minute 2 homolog isoform MDM2i
alt prot [497aa] mouse double minute 2 homolog isoform MDM2
alt prot [249aa] mouse double minute 2 homolog isoform MDM2a
alt prot [179aa] mouse double minute 2 homolog isoform MDM2e
alt prot [111aa] mouse double minute 2 homolog isoform MDM2b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.7          3           1
 C cysteine            2.3          4           1
 D aspartate           4.7          8           1
 E glutamate           6.4         11           2
 F phenylalanine       1.7          3           1
 G glycine             4.7          8           2
 H histidine           1.7          3           1
 I isoleucine          2.9          5           1
 K lysine              8.1         14           2
 L leucine            11.6         20           3
 M methionine          4.1          7           1
 N asparagine          4.7          8           1
 P proline             4.7          8           1
 Q glutamine           7.0         12           2
 R arginine            4.7          8           1
 S serine              8.1         14           2
 T threonine           6.4         11           2
 V valine              9.9         17           3
 W tryptophan          0.6          1           1
 Y tyrosine            4.1          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mouse double minute 2 homolog isoform MDM2d 
MDM2                  0.876   mouse double minute 2 homolog isoform MDM2a 
MDM2                  0.876   mouse double minute 2 homolog isoform MDM2 
MDM2                  0.842   mouse double minute 2 homolog isoform MDM2g 
MDM2                  0.677   mouse double minute 2 homolog isoform MDM2h 
MDM2                  0.556   mouse double minute 2 homolog isoform MDM2e 
MDM2                  0.522   mouse double minute 2 homolog isoform MDM2f 
MDM2                  0.475   mouse double minute 2 homolog isoform MDM2b 
MDM2                  0.248   mouse double minute 2 homolog isoform MDM2i 
MDM4                  0.248   mouse double minute 4 homolog 
BOD1L                 0.012   biorientation of chromosomes in cell division 1-like...
SOX6                  0.009   SRY (sex determining region Y)-box 6 isoform 4 [Hom...
SOX6                  0.009   SRY (sex determining region Y)-box 6 isoform 3 [Hom...
SOX6                  0.009   SRY (sex determining region Y)-box 6 isoform 1 [Homo...
SOX6                  0.009   SRY (sex determining region Y)-box 6 isoform 2 [Homo...
LOC643677             0.009   hypothetical protein LOC643677 
LOC643677             0.009   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.009   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.009   PREDICTED: hypothetical protein LOC643677 
ULK4                  0.009   unc-51-like kinase 4 
NASP                  0.009   nuclear autoantigenic sperm protein isoform 2 
NASP                  0.009   nuclear autoantigenic sperm protein isoform 1 
KDM2B                 0.009   F-box and leucine-rich repeat protein 10 isoform a [...
KDM2B                 0.009   F-box and leucine-rich repeat protein 10 isoform b [...
PALB2                 0.006   partner and localizer of BRCA2 
C21orf66              0.006   GC-rich sequence DNA-binding factor candidate isofor...
C21orf66              0.006   GC-rich sequence DNA-binding factor candidate isofor...
GLMN                  0.006   glomulin 
DPF3                  0.006   D4, zinc and double PHD fingers, family 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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