Guide to the Human Genome
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Name: LOC643677 Sequence: fasta or formatted (6929aa) NCBI GI: 239750569
Description:

PREDICTED: hypothetical protein LOC643677

Referenced in:

Additional Conserved Proteins

Other entries for this name:
alt prot [7081aa] hypothetical protein LOC643677
alt prot [6929aa] PREDICTED: hypothetical protein LOC643677
alt prot [6929aa] PREDICTED: hypothetical protein LOC643677
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0        277           2
 C cysteine            1.5        103           1
 D aspartate           4.6        318           2
 E glutamate           8.8        607           5
 F phenylalanine       2.8        192           3
 G glycine             4.3        297           2
 H histidine           2.9        201           2
 I isoleucine          5.7        396           3
 K lysine             11.1        769           3
 L leucine             8.7        603           3
 M methionine          2.3        162           2
 N asparagine          4.4        307           2
 P proline             5.4        374           4
 Q glutamine           6.2        427           3
 R arginine            4.2        291           2
 S serine             10.4        718           3
 T threonine           5.9        411           2
 V valine              4.5        313           2
 W tryptophan          0.5         37           1
 Y tyrosine            1.8        126           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.999   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.999   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.976   hypothetical protein LOC643677 
CENPE                 0.003   centromere protein E 
RPGR                  0.003   retinitis pigmentosa GTPase regulator isoform C [Hom...
NSBP1                 0.002   nucleosomal binding protein 1 
NEFH                  0.002   neurofilament, heavy polypeptide 200kDa 
GOLGA4                0.002   golgi autoantigen, golgin subfamily a, 4 
MYH8                  0.002   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH7                  0.002   myosin, heavy chain 7, cardiac muscle, beta 
MYH9                  0.002   myosin, heavy polypeptide 9, non-muscle 
LOC727832             0.002   golgi autoantigen, golgin subfamily a-like 
NEFM                  0.002   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.002   neurofilament, medium polypeptide 150kDa isoform 2 ...
WDR87                 0.002   NYD-SP11 protein 
MYH13                 0.002   myosin, heavy polypeptide 13, skeletal muscle [Homo...
EIF5B                 0.002   eukaryotic translation initiation factor 5B 
LOC283685             0.002   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CALD1                 0.002   caldesmon 1 isoform 1 
LOC283767             0.002   golgi autoantigen, golgin subfamily a-like 
DAXX                  0.002   death-domain associated protein isoform a 
DAXX                  0.002   death-domain associated protein isoform a 
DAXX                  0.002   death-domain associated protein isoform b 
SYCP1                 0.002   synaptonemal complex protein 1 
MYH3                  0.002   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH10                 0.002   myosin, heavy polypeptide 10, non-muscle 
KIF21A                0.002   kinesin family member 21A 
PLEC1                 0.002   plectin 1 isoform 11 
PLEC1                 0.002   plectin 1 isoform 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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