Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MDM2 Sequence: fasta or formatted (295aa) NCBI GI: 223890207
Description:

mouse double minute 2 homolog isoform MDM2i

Referenced in:

p53 Pathway
Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [452aa] mouse double minute 2 homolog isoform MDM2f
alt prot [444aa] mouse double minute 2 homolog isoform MDM2g
alt prot [442aa] mouse double minute 2 homolog isoform MDM2h
alt prot [497aa] mouse double minute 2 homolog isoform MDM2
alt prot [249aa] mouse double minute 2 homolog isoform MDM2a
alt prot [179aa] mouse double minute 2 homolog isoform MDM2e
alt prot [111aa] mouse double minute 2 homolog isoform MDM2b
alt prot [172aa] mouse double minute 2 homolog isoform MDM2d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         11           1
 C cysteine            4.7         14           1
 D aspartate           8.1         24           2
 E glutamate          11.9         35           2
 F phenylalanine       2.0          6           1
 G glycine             4.1         12           1
 H histidine           1.4          4           1
 I isoleucine          3.7         11           2
 K lysine              7.8         23           2
 L leucine             6.8         20           3
 M methionine          2.0          6           1
 N asparagine          4.1         12           1
 P proline             5.8         17           2
 Q glutamine           5.4         16           1
 R arginine            2.7          8           1
 S serine             11.2         33           3
 T threonine           5.4         16           2
 V valine              5.8         17           1
 W tryptophan          1.4          4           1
 Y tyrosine            2.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mouse double minute 2 homolog isoform MDM2i 
MDM2                  0.804   mouse double minute 2 homolog isoform MDM2h 
MDM2                  0.804   mouse double minute 2 homolog isoform MDM2f 
MDM2                  0.804   mouse double minute 2 homolog isoform MDM2 
MDM2                  0.657   mouse double minute 2 homolog isoform MDM2g 
MDM2                  0.256   mouse double minute 2 homolog isoform MDM2e 
MDM2                  0.244   mouse double minute 2 homolog isoform MDM2a 
MDM4                  0.213   mouse double minute 4 homolog 
MDM2                  0.137   mouse double minute 2 homolog isoform MDM2d 
MDM2                  0.137   mouse double minute 2 homolog isoform MDM2b 
NEURL                 0.029   neuralized-like 
RNF34                 0.029   ring finger protein 34 isoform 1 
RNF34                 0.029   ring finger protein 34 isoform 2 
BIRC3                 0.029   baculoviral IAP repeat-containing protein 3 
BIRC3                 0.029   baculoviral IAP repeat-containing protein 3 
DSPP                  0.027   dentin sialophosphoprotein preproprotein 
NEURL1B               0.024   neuralized homolog 1B 
RNF157                0.024   ring finger protein 157 
SETD1B                0.024   SET domain containing 1B 
MYLIP                 0.024   myosin regulatory light chain interacting protein [H...
NSBP1                 0.024   nucleosomal binding protein 1 
BIRC2                 0.024   baculoviral IAP repeat-containing protein 2 
BPTF                  0.024   bromodomain PHD finger transcription factor isoform ...
MYST3                 0.024   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.024   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.024   MYST histone acetyltransferase (monocytic leukemia)...
SR140                 0.024   U2-associated SR140 protein 
MUL1                  0.020   mitochondrial ubiquitin ligase activator of NFKB 1 ...
XIAP                  0.020   baculoviral IAP repeat-containing protein 4 
LEO1                  0.020   Leo1, Paf1/RNA polymerase II complex component, homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press