Guide to the Human Genome
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Name: KDM2B Sequence: fasta or formatted (1336aa) NCBI GI: 54112382
Description:

F-box and leucine-rich repeat protein 10 isoform a

Referenced in:

Cullins and SCF Complexes
Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt prot [1265aa] F-box and leucine-rich repeat protein 10 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         59           2
 C cysteine            3.2         43           2
 D aspartate           5.1         68           3
 E glutamate           8.7        116           4
 F phenylalanine       2.8         37           2
 G glycine             5.5         74           2
 H histidine           2.5         34           1
 I isoleucine          3.7         50           2
 K lysine              8.1        108           3
 L leucine             9.2        123           2
 M methionine          2.3         31           1
 N asparagine          3.1         42           1
 P proline             7.3         98           3
 Q glutamine           4.0         54           3
 R arginine            7.8        104           4
 S serine              7.9        105           3
 T threonine           4.7         63           3
 V valine              5.7         76           2
 W tryptophan          1.6         22           2
 Y tyrosine            2.2         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   F-box and leucine-rich repeat protein 10 isoform a [... 
KDM2B                 0.922   F-box and leucine-rich repeat protein 10 isoform b [...
KDM2A                 0.292   F-box and leucine-rich repeat protein 11 
FBXL19                0.177   F-box and leucine-rich repeat protein 19 
PHF8                  0.097   PHD finger protein 8 
JHDM1D                0.091   jumonji C domain containing histone demethylase 1 ho...
PHF2                  0.082   PHD finger protein 2 
FBXL20                0.019   F-box and leucine-rich repeat protein 20 
FBXL2                 0.017   F-box and leucine-rich repeat protein 2 
CXXC1                 0.015   CXXC finger 1 (PHD domain) isoform 1 
CXXC1                 0.015   CXXC finger 1 (PHD domain) isoform 2 
FBXL7                 0.015   F-box and leucine-rich repeat protein 7 
DNMT1                 0.014   DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho...
DNMT1                 0.014   DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo...
FBXL16                0.013   F-box and leucine-rich repeat protein 16 
SRRM1                 0.013   serine/arginine repetitive matrix 1 
SKP2                  0.012   S-phase kinase-associated protein 2 isoform 1 
FBXL13                0.012   F-box and leucine-rich repeat protein 13 isoform 2 ...
FBXL13                0.012   F-box and leucine-rich repeat protein 13 isoform 1 ...
SKP2                  0.012   S-phase kinase-associated protein 2 isoform 2 
MBD1                  0.011   methyl-CpG binding domain protein 1 isoform 2 
MBD1                  0.011   methyl-CpG binding domain protein 1 isoform PCM1 [Ho...
MBD1                  0.011   methyl-CpG binding domain protein 1 isoform 1 
FBXL14                0.011   F-box and leucine-rich repeat protein 14 
MLL4                  0.011   myeloid/lymphoid or mixed-lineage leukemia 4 
NEFH                  0.009   neurofilament, heavy polypeptide 200kDa 
AEBP1                 0.009   adipocyte enhancer binding protein 1 precursor [Homo...
ZC3H18                0.009   zinc finger CCCH-type containing 18 
TTN                   0.008   titin isoform N2-A 
RBM25                 0.008   RNA binding motif protein 25 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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