Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C22orf26 Sequence: fasta or formatted (138aa) NCBI GI: 8922785
Description:

hypothetical protein LOC55267

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.7         23           2
 C cysteine            2.2          3           1
 D aspartate           0.0          0           0
 E glutamate           0.7          1           1
 F phenylalanine       2.2          3           1
 G glycine             6.5          9           1
 H histidine           3.6          5           1
 I isoleucine          0.7          1           1
 K lysine              0.0          0           0
 L leucine             9.4         13           2
 M methionine          0.7          1           1
 N asparagine          2.2          3           1
 P proline            21.0         29           2
 Q glutamine           2.2          3           1
 R arginine           13.0         18           3
 S serine              6.5          9           1
 T threonine           4.3          6           1
 V valine              4.3          6           1
 W tryptophan          3.6          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55267 
EIF3F                 0.087   eukaryotic translation initiation factor 3, subunit 5...
PRRT3                 0.069   proline-rich transmembrane protein 3 
TTC22                 0.062   tetratricopeptide repeat domain 22 isoform 2 
WBP11                 0.058   WW domain binding protein 11 
PTPN23                0.058   protein tyrosine phosphatase, non-receptor type 23 [...
ZFPM1                 0.055   zinc finger protein, multitype 1 
LOC100288963          0.055   PREDICTED: hypothetical protein XP_002342546 
WIPF3                 0.055   WAS/WASL interacting protein family, member 3 [Homo...
ANKRD18B              0.055   PREDICTED: ankyrin repeat domain 18B 
FLJ22184              0.051   PREDICTED: hypothetical protein FLJ22184 
ZNF469                0.051   zinc finger protein 469 
C12orf53              0.051   hypothetical protein LOC196500 
LOC440829             0.051   PREDICTED: transmembrane protein 46-like 
SYNPO                 0.051   synaptopodin isoform A 
FAM71E2               0.051   hypothetical protein LOC284418 
MYO15A                0.051   myosin XV 
WNK4                  0.051   WNK lysine deficient protein kinase 4 
GRIN2C                0.051   N-methyl-D-aspartate receptor subunit 2C precursor [...
SAMD1                 0.051   sterile alpha motif domain containing 1 
C6orf132              0.047   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.047   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.047   PREDICTED: hypothetical protein LOC647024 
TAF4                  0.047   TBP-associated factor 4 
BCORL1                0.047   BCL6 co-repressor-like 1 
LOC100130360          0.047   PREDICTED: hypothetical protein 
B4GALNT4              0.047   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
TBKBP1                0.047   TBK1 binding protein 1 
BAHCC1                0.047   BAH domain and coiled-coil containing 1 
BAT2D1                0.047   HBxAg transactivated protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press