Guide to the Human Genome
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Name: LOC644525 Sequence: fasta or formatted (130aa) NCBI GI: 89058402
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {283aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         15           1
 C cysteine            3.1          4           2
 D aspartate           3.1          4           1
 E glutamate          10.0         13           2
 F phenylalanine       2.3          3           1
 G glycine             4.6          6           1
 H histidine           2.3          3           1
 I isoleucine          0.8          1           1
 K lysine              3.8          5           1
 L leucine             9.2         12           1
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline            15.4         20           2
 Q glutamine           6.9          9           1
 R arginine            3.1          4           1
 S serine              8.5         11           3
 T threonine           3.1          4           1
 V valine              6.2          8           2
 W tryptophan          4.6          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289194          1.000   PREDICTED: hypothetical protein XP_002343934 
LOC642669             0.988   PREDICTED: hypothetical protein 
LOC644525             0.933   PREDICTED: hypothetical protein 
C2orf27A              0.902   hypothetical protein LOC29798 
C2orf27B              0.831   hypothetical protein LOC408029 
RGL4                  0.129   ral guanine nucleotide dissociation stimulator-like ...
CDRT15                0.090   CMT1A duplicated region transcript 15 
RALGDS                0.075   ral guanine nucleotide dissociation stimulator isofo...
RALGDS                0.075   ral guanine nucleotide dissociation stimulator isof...
ARHGAP29              0.047   PTPL1-associated RhoGAP 1 
SAMD1                 0.043   sterile alpha motif domain containing 1 
DGKK                  0.043   diacylglycerol kinase kappa 
FSCB                  0.039   fibrous sheath CABYR binding protein 
LOC100287920          0.039   PREDICTED: hypothetical protein XP_002344198 
ARAP1                 0.039   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
LOC100294050          0.039   PREDICTED: hypothetical protein 
C6orf132              0.039   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.039   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.039   PREDICTED: hypothetical protein LOC647024 
POU6F2                0.035   POU domain, class 6, transcription factor 2 
NACA                  0.035   nascent polypeptide-associated complex alpha subuni...
C22orf26              0.031   hypothetical protein LOC55267 
SPATA2L               0.031   spermatogenesis associated 2-like 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.031   PREDICTED: hypothetical protein LOC80164 
SPEN                  0.031   spen homolog, transcriptional regulator 
CHRM4                 0.027   cholinergic receptor, muscarinic 4 
PTPN23                0.027   protein tyrosine phosphatase, non-receptor type 23 [...
VCX                   0.027   variable charge, X chromosome 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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