Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SPATA2L Sequence: fasta or formatted (424aa) NCBI GI: 31377585
Description:

spermatogenesis associated 2-like

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         52           3
 C cysteine            2.8         12           2
 D aspartate           5.2         22           2
 E glutamate           7.3         31           2
 F phenylalanine       1.9          8           1
 G glycine             7.5         32           2
 H histidine           1.9          8           1
 I isoleucine          0.9          4           1
 K lysine              1.4          6           1
 L leucine            15.8         67           3
 M methionine          0.9          4           1
 N asparagine          0.2          1           1
 P proline             9.2         39           3
 Q glutamine           4.5         19           2
 R arginine            8.5         36           2
 S serine              8.0         34           3
 T threonine           2.6         11           2
 V valine              4.2         18           1
 W tryptophan          1.9          8           1
 Y tyrosine            2.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spermatogenesis associated 2-like 
SPATA2                0.054   spermatogenesis associated 2 
SPATA2                0.054   spermatogenesis associated 2 
DUSP8                 0.020   dual specificity phosphatase 8 
LOC100290397          0.019   PREDICTED: hypothetical protein XP_002348309, parti...
MED13                 0.019   mediator complex subunit 13 
DTX1                  0.019   deltex homolog 1 
LOC653548             0.019   PREDICTED: double homeobox, 4-like 
LOC441056             0.019   PREDICTED: double homeobox, 4-like 
DUX4                  0.019   double homeobox, 4 
LOC728410             0.019   double homeobox, 4-like 
LOC653543             0.019   double homeobox, 4-like 
LOC653545             0.019   double homeobox, 4-like 
LOC653544             0.019   double homeobox, 4-like 
TNK2                  0.018   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.018   tyrosine kinase, non-receptor, 2 isoform 2 
DBN1                  0.017   drebrin 1 isoform b 
DBN1                  0.017   drebrin 1 isoform a 
ZNF687                0.017   zinc finger protein 687 
LOC440017             0.017   PREDICTED: similar to double homeobox, 4 
LOC728022             0.017   PREDICTED: similar to double homeobox, 4 
LOC100289581          0.017   PREDICTED: hypothetical protein XP_002343082 
LOC440014             0.017   PREDICTED: similar to double homeobox, 4 
LOC399839             0.017   PREDICTED: similar to double homeobox, 4 
LOC440013             0.017   PREDICTED: similar to double homeobox, 4 
COL27A1               0.017   collagen, type XXVII, alpha 1 
ZNF628                0.016   zinc finger protein 628 
EP300                 0.014   E1A binding protein p300 
LOC100129129          0.014   PREDICTED: hypothetical protein 
SYN1                  0.014   synapsin I isoform Ia 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press