Guide to the Human Genome
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Name: LOC730474 Sequence: fasta or formatted (214aa) NCBI GI: 169167859
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Other entries for this name:
alt prot {194aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.9          4           1
 C cysteine            0.0          0           0
 D aspartate           0.9          2           1
 E glutamate           0.9          2           1
 F phenylalanine       0.9          2           1
 G glycine             1.4          3           1
 H histidine           0.9          2           1
 I isoleucine         12.1         26           1
 K lysine              0.9          2           1
 L leucine             4.2          9           3
 M methionine          0.5          1           1
 N asparagine          1.9          4           1
 P proline             1.4          3           1
 Q glutamine           1.4          3           1
 R arginine            1.4          3           2
 S serine              3.7          8           2
 T threonine          63.6        136          14
 V valine              0.0          0           0
 W tryptophan          0.5          1           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
LOC730474             0.755   PREDICTED: hypothetical protein 
MUC2                  0.336   mucin 2 precursor 
LOC100294420          0.315   PREDICTED: similar to mucin 2 
LOC100294470          0.289   PREDICTED: hypothetical protein, partial 
LOC729792             0.238   PREDICTED: hypothetical protein 
LOC729792             0.238   PREDICTED: hypothetical protein 
LOC729792             0.238   PREDICTED: hypothetical protein 
LOC100294501          0.238   PREDICTED: hypothetical protein 
LOC100294249          0.238   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.238   PREDICTED: hypothetical protein 
LOC100294204          0.238   PREDICTED: hypothetical protein 
LOC100294136          0.238   PREDICTED: hypothetical protein 
LOC100294091          0.238   PREDICTED: hypothetical protein 
LOC730401             0.238   PREDICTED: hypothetical protein 
LOC100131251          0.230   PREDICTED: hypothetical protein 
LOC100131251          0.230   PREDICTED: hypothetical protein 
LOC100131514          0.220   PREDICTED: similar to hCG1747327, partial 
MUC5B                 0.217   mucin 5, subtype B, tracheobronchial 
MUC5AC                0.209   mucin 5AC 
MUC3A                 0.209   PREDICTED: mucin 3A, cell surface associated, parti...
LOC100131514          0.204   PREDICTED: similar to intestinal mucin MUC3B 
MUC3A                 0.204   PREDICTED: mucin 3A, intestinal 
LOC100133790          0.202   PREDICTED: intestinal mucin-like, partial 
LOC732156             0.202   PREDICTED: similar to Mucin-3A 
LOC100134147          0.194   PREDICTED: hypothetical protein 
LOC100132635          0.194   PREDICTED: similar to mucin 5, partial 
LOC100294236          0.189   PREDICTED: similar to diffuse panbronchiolitis crit...
MUC3B                 0.176   PREDICTED: mucin 3B, cell surface associated, parti...
LOC100134138          0.171   PREDICTED: similar to mucin, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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