Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KIAA0430 Sequence: fasta or formatted (1742aa) NCBI GI: 85797660
Description:

limkain b1

Referenced in:

Peroxisomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2        108           2
 C cysteine            3.1         54           2
 D aspartate           3.8         67           2
 E glutamate           6.4        111           2
 F phenylalanine       3.7         64           2
 G glycine             4.8         84           6
 H histidine           3.7         64           3
 I isoleucine          4.5         78           2
 K lysine              6.7        117           2
 L leucine            10.8        189           3
 M methionine          1.3         23           2
 N asparagine          4.5         78           2
 P proline             6.5        114           4
 Q glutamine           5.1         88           2
 R arginine            4.0         70           2
 S serine             10.6        185           4
 T threonine           5.1         89           2
 V valine              6.4        112           2
 W tryptophan          0.7         12           1
 Y tyrosine            2.0         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   limkain b1 
EP400                 0.005   E1A binding protein p400 
MUC16                 0.003   mucin 16 
XIRP2                 0.003   xin actin-binding repeat containing 2 isoform 1 [Ho...
ARID4B                0.003   AT rich interactive domain 4B isoform 2 
ARID4B                0.003   AT rich interactive domain 4B isoform 1 
WHSC2                 0.003   Wolf-Hirschhorn syndrome candidate 2 protein 
ZC3H8                 0.003   zinc finger CCCH-type containing 8 
MAGEC1                0.003   melanoma antigen family C, 1 
SGK269                0.003   NKF3 kinase family member 
GGN                   0.003   gametogenetin 
GAK                   0.003   cyclin G associated kinase 
MAFA                  0.003   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
SF1                   0.003   splicing factor 1 isoform 3 
SF1                   0.003   splicing factor 1 isoform 2 
SF1                   0.003   splicing factor 1 isoform 1 
CMYA5                 0.003   cardiomyopathy associated 5 
NEFM                  0.003   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.003   neurofilament, medium polypeptide 150kDa isoform 2 ...
SRRM2                 0.003   splicing coactivator subunit SRm300 
HRH3                  0.003   histamine receptor H3 
NEFH                  0.003   neurofilament, heavy polypeptide 200kDa 
BCL9                  0.003   B-cell CLL/lymphoma 9 
FAT3                  0.003   FAT tumor suppressor homolog 3 
POU3F3                0.003   POU class 3 homeobox 3 
MRE11A                0.002   meiotic recombination 11 homolog A isoform 1 
CNOT3                 0.002   CCR4-NOT transcription complex, subunit 3 
SETD5                 0.002   SET domain containing 5 
LOC284297             0.002   hypothetical protein LOC284297 
SH3KBP1               0.002   SH3-domain kinase binding protein 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press