Guide to the Human Genome
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Name: XIRP2 Sequence: fasta or formatted (3549aa) NCBI GI: 119372317
Description:

xin actin-binding repeat containing 2 isoform 1

Referenced in:

LIM Domain Proteins
Muscle

Other entries for this name:
alt prot [938aa] xin actin-binding repeat containing 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1        146           3
 C cysteine            1.0         36           1
 D aspartate           5.1        182           2
 E glutamate          10.7        379           3
 F phenylalanine       3.0        106           2
 G glycine             4.4        155           2
 H histidine           2.5         90           2
 I isoleucine          5.9        209           3
 K lysine              9.7        345           3
 L leucine             6.3        225           3
 M methionine          2.1         73           2
 N asparagine          4.1        145           2
 P proline             5.2        186           6
 Q glutamine           6.0        212           2
 R arginine            4.4        156           3
 S serine              9.8        348           4
 T threonine           7.3        258           3
 V valine              5.9        208           2
 W tryptophan          0.7         26           1
 Y tyrosine            1.8         64           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   xin actin-binding repeat containing 2 isoform 1 [Ho... 
XIRP2                 0.108   xin actin-binding repeat containing 2 isoform 2 [Ho...
XIRP1                 0.056   xin actin-binding repeat containing 1 
GOLGA4                0.006   golgi autoantigen, golgin subfamily a, 4 
CLIP1                 0.006   restin isoform b 
CLIP1                 0.006   restin isoform a 
CEP110                0.006   centrosomal protein 110kDa 
CENPE                 0.006   centromere protein E 
WIPF1                 0.005   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.005   WAS/WASL interacting protein family, member 1 
CEP164                0.005   centrosomal protein 164kDa 
GOLGB1                0.005   golgi autoantigen, golgin subfamily b, macrogolgin ...
BRD4                  0.005   bromodomain-containing protein 4 isoform long 
FKBP15                0.005   FK506 binding protein 15, 133kDa 
WASL                  0.005   Wiskott-Aldrich syndrome gene-like protein 
PCDH15                0.005   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.005   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.005   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.005   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.005   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.005   protocadherin 15 isoform CD1-6 precursor 
PCDH15                0.005   protocadherin 15 isoform CD1-2 precursor 
PCDH15                0.005   protocadherin 15 isoform CD1-1 precursor 
UACA                  0.005   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.005   uveal autoantigen with coiled-coil domains and ankyr...
RAPH1                 0.005   Ras association and pleckstrin homology domains 1 is...
PCLO                  0.004   piccolo isoform 2 
PCLO                  0.004   piccolo isoform 1 
ZFC3H1                0.004   proline/serine-rich coiled-coil 2 
YLPM1                 0.004   YLP motif containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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