BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|139394646 iroquois homeobox protein 5 [Homo sapiens] (483 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 1018 0.0 gi|197100900 iroquois homeobox 2 [Homo sapiens] 372 e-103 gi|39930475 iroquois homeobox 2 [Homo sapiens] 372 e-103 gi|226371735 iroquois homeobox 3 [Homo sapiens] 222 5e-58 gi|7705555 iroquois homeobox 4 [Homo sapiens] 204 1e-52 gi|51479177 iroquois homeobox protein 1 [Homo sapiens] 190 2e-48 gi|42544241 iroquois homeobox protein 6 [Homo sapiens] 176 6e-44 gi|178057337 mohawk homeobox [Homo sapiens] 81 2e-15 gi|33286446 opioid growth factor receptor [Homo sapiens] 75 1e-13 gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 74 2e-13 gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 69 1e-11 gi|56549694 enabled homolog isoform a [Homo sapiens] 68 2e-11 gi|39930375 enabled homolog isoform b [Homo sapiens] 68 2e-11 gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 68 2e-11 gi|163965366 nascent polypeptide-associated complex alpha subuni... 68 2e-11 gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 67 4e-11 gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 67 4e-11 gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 67 4e-11 gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 65 1e-10 gi|55750053 atrophin-1 [Homo sapiens] 65 2e-10 gi|55750041 atrophin-1 [Homo sapiens] 65 2e-10 gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 64 3e-10 gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 64 4e-10 gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 63 7e-10 gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 63 7e-10 gi|110832843 TBP-associated factor 4 [Homo sapiens] 63 7e-10 gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 62 9e-10 gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 62 2e-09 gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 60 6e-09 gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 59 1e-08 >gi|139394646 iroquois homeobox protein 5 [Homo sapiens] Length = 483 Score = 1018 bits (2631), Expect = 0.0 Identities = 483/483 (100%), Positives = 483/483 (100%) Query: 1 MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPG 60 MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPG Sbjct: 1 MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPG 60 Query: 61 YNSHLQYGADPAAAAAAAFSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPYGDPAYRKNA 120 YNSHLQYGADPAAAAAAAFSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPYGDPAYRKNA Sbjct: 61 YNSHLQYGADPAAAAAAAFSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPYGDPAYRKNA 120 Query: 121 TRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWT 180 TRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWT Sbjct: 121 TRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWT 180 Query: 181 PRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAG 240 PRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAG Sbjct: 181 PRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAG 240 Query: 241 KETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGP 300 KETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGP Sbjct: 241 KETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGP 300 Query: 301 HPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCP 360 HPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCP Sbjct: 301 HPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCP 360 Query: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH Sbjct: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420 Query: 421 LHGHPGPGPGPTTGPGSHFNGLNQTVLNRADALAKDPKMLRSQSQLDLCKDSPYELKKGM 480 LHGHPGPGPGPTTGPGSHFNGLNQTVLNRADALAKDPKMLRSQSQLDLCKDSPYELKKGM Sbjct: 421 LHGHPGPGPGPTTGPGSHFNGLNQTVLNRADALAKDPKMLRSQSQLDLCKDSPYELKKGM 480 Query: 481 SDI 483 SDI Sbjct: 481 SDI 483 >gi|197100900 iroquois homeobox 2 [Homo sapiens] Length = 471 Score = 372 bits (954), Expect = e-103 Identities = 219/432 (50%), Positives = 255/432 (59%), Gaps = 50/432 (11%) Query: 1 MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSP- 59 MSYPQGYLYQ SLALYSCPAY S ++ PR++EL RS+SGSAFSPY GS AFTA + Sbjct: 1 MSYPQGYLYQAPGSLALYSCPAYGASALAAPRSEELARSASGSAFSPYPGSAAFTAQAAT 60 Query: 60 GYNSHLQYGADPAAAAAAAFSSYVGSPYD-HTPGMAGSLGYHPYAAPLGSYPYGDPAYRK 118 G+ S LQY AD AAAAAA F SY+G+PYD HT GM G++ YHPY + Y DPAYRK Sbjct: 61 GFGSPLQYSAD-AAAAAAGFPSYMGAPYDAHTTGMTGAISYHPYGSAAYPYQLNDPAYRK 119 Query: 119 NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 178 NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT Sbjct: 120 NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 179 Query: 179 WTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAG-------------GAEQKA 225 W PRN+SEDE+E+E D ++ ++ P K ++ + + G AE Sbjct: 180 WAPRNKSEDEDEDEG-DATRSKDESPDKAQEGTETSAEDEGISLHVDSLTDHSCSAESDG 238 Query: 226 ASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAE 285 R P +G E + D + E E L PP+ SP A L Sbjct: 239 EKLPCRAGDPLCESGSECKDKYDDLEDDEDDDEEGERGL-APPKPVTSSPLTGLEAPLLS 297 Query: 286 DPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSD 345 P P AP G G + P PPPA +KPKLWSLAEIATS Sbjct: 298 PP----PEAAPRGGRKTPQGS-----------RTSPGAPPPA--SKPKLWSLAEIATSDL 340 Query: 346 KVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYT 405 K G P C P G A+ APA + +P P+P +L RPLYYT Sbjct: 341 KQPSLG--------PGCGPP-------GLPAAAAPASTGAPPGGSPYPASPLLGRPLYYT 385 Query: 406 APFYPGYTNYGS 417 +PFY YTNYG+ Sbjct: 386 SPFYGNYTNYGN 397 >gi|39930475 iroquois homeobox 2 [Homo sapiens] Length = 471 Score = 372 bits (954), Expect = e-103 Identities = 219/432 (50%), Positives = 255/432 (59%), Gaps = 50/432 (11%) Query: 1 MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSP- 59 MSYPQGYLYQ SLALYSCPAY S ++ PR++EL RS+SGSAFSPY GS AFTA + Sbjct: 1 MSYPQGYLYQAPGSLALYSCPAYGASALAAPRSEELARSASGSAFSPYPGSAAFTAQAAT 60 Query: 60 GYNSHLQYGADPAAAAAAAFSSYVGSPYD-HTPGMAGSLGYHPYAAPLGSYPYGDPAYRK 118 G+ S LQY AD AAAAAA F SY+G+PYD HT GM G++ YHPY + Y DPAYRK Sbjct: 61 GFGSPLQYSAD-AAAAAAGFPSYMGAPYDAHTTGMTGAISYHPYGSAAYPYQLNDPAYRK 119 Query: 119 NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 178 NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT Sbjct: 120 NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 179 Query: 179 WTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAG-------------GAEQKA 225 W PRN+SEDE+E+E D ++ ++ P K ++ + + G AE Sbjct: 180 WAPRNKSEDEDEDEG-DATRSKDESPDKAQEGTETSAEDEGISLHVDSLTDHSCSAESDG 238 Query: 226 ASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAE 285 R P +G E + D + E E L PP+ SP A L Sbjct: 239 EKLPCRAGDPLCESGSECKDKYDDLEDDEDDDEEGERGL-APPKPVTSSPLTGLEAPLLS 297 Query: 286 DPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSD 345 P P AP G G + P PPPA +KPKLWSLAEIATS Sbjct: 298 PP----PEAAPRGGRKTPQGS-----------RTSPGAPPPA--SKPKLWSLAEIATSDL 340 Query: 346 KVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYT 405 K G P C P G A+ APA + +P P+P +L RPLYYT Sbjct: 341 KQPSLG--------PGCGPP-------GLPAAAAPASTGAPPGGSPYPASPLLGRPLYYT 385 Query: 406 APFYPGYTNYGS 417 +PFY YTNYG+ Sbjct: 386 SPFYGNYTNYGN 397 >gi|226371735 iroquois homeobox 3 [Homo sapiens] Length = 501 Score = 222 bits (566), Expect = 5e-58 Identities = 160/402 (39%), Positives = 200/402 (49%), Gaps = 48/402 (11%) Query: 46 SPYAGSTAFTAPSPGYNSHLQYGAD-PAAAAAAAFSSYVGSPYDHTPGMAGSLGY-HPYA 103 +PYA + A A + GY + L Y A+ P A SP P A + + HP Sbjct: 59 APYAAAAA-AAAAQGYGAFLPYAAELPIFPQLGAQYELKDSPGVQHPAAAAAFPHPHPAF 117 Query: 104 APLGSYPYGDPAYRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTW 163 P G Y +GDP+ KNATR++T+TLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTW Sbjct: 118 YPYGQYQFGDPSRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTW 177 Query: 164 FANARRRLKKENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQ 223 FANARRRLKKENKMTW PR+R+++E + E+ DE+E ++ +G E+ Sbjct: 178 FANARRRLKKENKMTWAPRSRTDEEGNAYGSEREEEDEEEDEE-------DGKRELELEE 230 Query: 224 KAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARL 283 + G E G A + + + + +E L +L G R G GP + Sbjct: 231 EELGGEEEDTGGEGLADDDEDEEIDLENLDGAATEPEL-SLAGAARRDGDLGLGPISDSK 289 Query: 284 AEDPAPH--------YPAGAPAPGPHPAAGEVPPGPGGP-SVIHSPPPPPPPAVLAKPKL 334 D P + AP P P A P P P S+ P P P + L KPK+ Sbjct: 290 NSDSEDSSEGLEDRPLPVLSLAPAPPPVAVASPSLPSPPVSLDPCAPAPAPASALQKPKI 349 Query: 335 WSLAEIATSSDKVKDGGGGNEGSPCPPCPG-PIAGQALGGSRASPAPAPSRSPSAQCPFP 393 WSLAE ATS D + G GSP PG +A AL S A+ A A R SA P Sbjct: 350 WSLAETATSPDNPRRSPPGAGGSP----PGAAVAPSALQLSPAAAAAAAHRLVSA----P 401 Query: 394 GGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGP 435 G +P +TN PGP PGP P Sbjct: 402 LGK------------FPAWTN-------RPFPGPPPGPRLHP 424 >gi|7705555 iroquois homeobox 4 [Homo sapiens] Length = 519 Score = 204 bits (519), Expect = 1e-52 Identities = 150/402 (37%), Positives = 193/402 (48%), Gaps = 40/402 (9%) Query: 12 SASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPGYNSHLQYGADP 71 SA +Y CP Y + +++ R + ++ G PY GS GY +++ YG++ Sbjct: 42 SAQAPVY-CPVYESRLLATARHELNSAAALGVYGGPYGGSQ-------GYGNYVTYGSEA 93 Query: 72 AAAAAA-AFSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPYG------DPAYRKNATRDA 124 +A + +F S GS H + Y+PY LG YPY RKNATR+ Sbjct: 94 SAFYSLNSFDSKDGSGSAHGGLAPAAAAYYPYEPALGQYPYDRYGTMDSGTRRKNATRET 153 Query: 125 TATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNR 184 T+TLKAWL EHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTW PRN+ Sbjct: 154 TSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWPPRNK 213 Query: 185 SEDE-----EEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPA 239 DE E EE E+ +EP K +P G E E + L+ P Sbjct: 214 CADEKRPYAEGEEEEGGEEEAREEPLKSSKNAEPVGKEEKELELSDLDDFDPLEAEPPAC 273 Query: 240 GKETEGSLSDSDFKEPPS--EGRLDALQGPPRTGGPSPAGPAAARLAED-PAPHYPAGAP 296 + D + P+ +G + G R S A A L ED + Sbjct: 274 ELKPPFHSLDGGLERVPAAPDGPVKEASGALRM---SLAAGGGAALDEDLERARSCLRSA 330 Query: 297 APGPHPAAGEVPPGPGGPSVIHSP----PPPPPPAVLAKPKLWSLAEIATSSDKVKDGGG 352 A GP P +P GGP V + P + AKP++WSLA AT++ Sbjct: 331 AAGPEP----LPGAEGGPQVCEAKLGFVPAGASAGLEAKPRIWSLAHTATAAAAAATSLS 386 Query: 353 GNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPG 394 E P C G A + A+ + AP+ SPS P G Sbjct: 387 QTE---FPSCMLKRQGPA---APAAVSSAPATSPSVALPHSG 422 >gi|51479177 iroquois homeobox protein 1 [Homo sapiens] Length = 480 Score = 190 bits (483), Expect = 2e-48 Identities = 170/466 (36%), Positives = 215/466 (46%), Gaps = 94/466 (20%) Query: 1 MSYPQ-GYLYQPSASL----------ALYSCPAYSTSVISG-PRTDELGRSSSGSAFSPY 48 MS+PQ GY SA+ L + A + + SG P ELG + +A + Sbjct: 1 MSFPQLGYPQYLSAAGPGAYGGERPGVLAAAAAAAAAASSGRPGAAELGGGAGAAAVTSV 60 Query: 49 AGSTAFTAP---SPGYNSHLQYGADPAAAAAAAFSSYVGSPYDHTPGMAGSLGYHP--YA 103 G A P +P Y++ L Y AD + S +GS Y+ + + G HP +A Sbjct: 61 LGMYAAAGPYAGAPNYSAFLPYAAD------LSLFSQMGSQYE----LKDNPGVHPATFA 110 Query: 104 A-------PLGSYPYGDPAYRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMT 156 A P G + YGDP KNATR++T+TLKAWLNEHRKNPYPTKGEKIMLAIITKMT Sbjct: 111 AHTAPAYYPYGQFQYGDPGRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMT 170 Query: 157 LTQVSTWFANARRRLKKENKMTWTPRNRSEDE---------------EEEENIDLEKNDE 201 LTQVSTWFANARRRLKKENK+TW R++ +++ E++E IDLE D Sbjct: 171 LTQVSTWFANARRRLKKENKVTWGARSKDQEDGALFGSDTEGDPEKAEDDEEIDLESIDI 230 Query: 202 D-------EPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDF-K 253 D + +D+ E P A A S R QG P A + S K Sbjct: 231 DKIDEHDGDQSNEDDEDKAEAPHA----PAAPSALARDQGSPLAAADVLKPQDSPLGLAK 286 Query: 254 EPPSEGRLDALQGPPRTGG--PSPAG-PAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPG 310 E P G L GG +P G P LAE P GAP P P AG PG Sbjct: 287 EAPEPGSTRLLSPGAAAGGLQGAPHGKPKIWSLAETATS--PDGAPKASPPPPAGH--PG 342 Query: 311 PGGPSVIHSPPPPPPPAVLAKPKLWS--------------LAEIATSSDKVKDGGGGNEG 356 GPS + P PA L L++ LA+ + + + G G Sbjct: 343 AHGPS---AGAPLQHPAFLPSHGLYTCHIGKFSNWTNSAFLAQGSLLNMRSFLGVGAPHA 399 Query: 357 S------PCPPCPGP---IAGQALGGSRASPAPAPSRSPSAQCPFP 393 + P PP P P IA AL G +AS +P+ P P Sbjct: 400 APHGPHLPAPPPPQPPVAIAPGALNGDKASVRSSPTLPERDLVPRP 445 >gi|42544241 iroquois homeobox protein 6 [Homo sapiens] Length = 446 Score = 176 bits (445), Expect = 6e-44 Identities = 147/431 (34%), Positives = 181/431 (41%), Gaps = 92/431 (21%) Query: 20 CPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPGYNSHLQYGADPAAAAAAA- 78 C Y + ++ R + G+A Y A A + Y +L Y +P + A Sbjct: 49 CAPYDSRLLGSARPE------LGAALGIYGAPYAAAAAAQSYPGYLPYSPEPPSLYGALN 102 Query: 79 ----FSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPY--------GDPAYRKNATRDATA 126 F GS T +A Y+PY LG Y Y RKNATR+ T+ Sbjct: 103 PQYEFKEAAGS---FTSSLAQPGAYYPYERTLGQYQYERYGAVELSGAGRRKNATRETTS 159 Query: 127 TLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNRSE 186 TLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTW P+N+ Sbjct: 160 TLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWAPKNKGG 219 Query: 187 DEE-----EEENI----------------------DLEKNDEDEPQKPEDKGDPEGPEAG 219 +E EE+++ DLE +E+E ++ E + + AG Sbjct: 220 EERKAEGGEEDSLGCLTADTKEVTASQEARGLRLSDLEDLEEEEEEEEEAEDEEVVATAG 279 Query: 220 GAEQKAASGCERLQGPPTPAGKETEGSLSDSD---------FKEPPSEGRLDALQ---GP 267 + G + L GP A EG L + F +P D L G Sbjct: 280 DRLTEFRKGAQSLPGPCAAA---REGRLERRECGLAAPRFSFNDPSGSEEADFLSAETGS 336 Query: 268 PRTGGPSPA--GPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPP 325 PR P P LA GAP P P + E PG P Sbjct: 337 PRLTMHYPCLEKPRIWSLAHTATASAVEGAPPARPRPRSPECRMIPG-----------QP 385 Query: 326 PAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRS 385 PA S ++ D D S C P AL G + AP P RS Sbjct: 386 PA--------SARRLSVPRDSACD------ESSCIPKAFGNPKFALQGLPLNCAPCPRRS 431 Query: 386 -PSAQCPFPGG 395 P QC +P G Sbjct: 432 EPVVQCQYPSG 442 >gi|178057337 mohawk homeobox [Homo sapiens] Length = 352 Score = 81.3 bits (199), Expect = 2e-15 Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 112 GDPAYRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 171 G +++ A +D LK WL +HR NPYPTK EKI+LA+ ++MTL QVS WFANARRRL Sbjct: 69 GKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNWFANARRRL 128 Query: 172 K---KENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPE-GPEAGGAEQKAAS 227 K ++ ++W R + ++ + N + D+ + + P GG Sbjct: 129 KNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEGGYNTPVHH 188 Query: 228 GCERLQGPPTPAGKETEGSLSDSDFKEPP 256 + + AG E S+ D+ PP Sbjct: 189 PVIKSENSVIKAGVRPESRASE-DYVAPP 216 >gi|33286446 opioid growth factor receptor [Homo sapiens] Length = 677 Score = 75.5 bits (184), Expect = 1e-13 Identities = 67/203 (33%), Positives = 85/203 (41%), Gaps = 20/203 (9%) Query: 208 EDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGP 267 E GD +GGA+ A +G G P AG G D++ + P EG + P Sbjct: 463 EGAGDSAAVASGGAQTLALAGSPAPSGHPK-AGHSENGVEEDTEGRTGPKEGTPGS---P 518 Query: 268 PRTGGPSPAGPAAARLAEDPA------PHYPAG-APAPGPHPAAGEVPPGPGGPSVIHSP 320 T GPSPAGPA AE P+ P PAG PA P G P GP G SP Sbjct: 519 SETPGPSPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESP 578 Query: 321 PPPPPPAVLAKPKLWSLAEIATSSDKVKDGG-GGNEGSPCP-PCPGPIAGQALGGSRASP 378 P P+ A P AE + + + G G+E + P PGP + G + P Sbjct: 579 SETPGPSP-AGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGP---RPAGPAGDEP 634 Query: 379 APAPSRSPSAQCPFPGGTVLSRP 401 A +PS +P P P G P Sbjct: 635 AESPSETPG---PSPAGPTRDEP 654 Score = 55.8 bits (133), Expect = 8e-08 Identities = 44/129 (34%), Positives = 52/129 (40%), Gaps = 18/129 (13%) Query: 202 DEPQKPEDKGDPEGPE-AGGAEQKAASGCERLQGPPT--PAGKETEGSLSDSDFKEPPSE 258 DEP E + GP AG A + A GP PAG E S S++ P Sbjct: 532 DEPA--ESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGP 589 Query: 259 GRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIH 318 R + + P T GP PAGPA AE P + PGP PA GP G Sbjct: 590 TRDEPAESPSETPGPRPAGPAGDEPAESP-------SETPGPRPA------GPAGDEPAE 636 Query: 319 SPPPPPPPA 327 SP P P+ Sbjct: 637 SPSETPGPS 645 Score = 42.7 bits (99), Expect = 7e-04 Identities = 36/106 (33%), Positives = 44/106 (41%), Gaps = 14/106 (13%) Query: 202 DEPQKPEDKGDPEGPE-AGGAEQKAASGCERLQGPPTPAGK---ETEGSLSDSDFKEPPS 257 DEP E + GP AG A + A GP +PAG E S S++ P Sbjct: 552 DEPA--ESPSETPGPRPAGPAGDEPAESPSETPGP-SPAGPTRDEPAESPSETPGPRPAG 608 Query: 258 EGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPA 303 + + P T GP PAGPA AE P + PGP PA Sbjct: 609 PAGDEPAESPSETPGPRPAGPAGDEPAESP-------SETPGPSPA 647 >gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] Length = 416 Score = 74.3 bits (181), Expect = 2e-13 Identities = 77/258 (29%), Positives = 91/258 (35%), Gaps = 40/258 (15%) Query: 202 DEPQKPEDKGDPEGPEAGGAEQKAA-SGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGR 260 ++PQ P G P+GP G + ++ S + QGPP G + +G PP G+ Sbjct: 87 NKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGP--------PPPPGK 138 Query: 261 LDALQGPPRTGGPSPAGPAAARLAEDPAP---------HYPAGAPAPGPHPAAGEVPPG- 310 QGPP GG P GP + P P P G P GP P G P G Sbjct: 139 P---QGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKP-QGPPPQGGNQPQGP 194 Query: 311 PGGPSVIHSPP---------PPPPPAVLAKPKLWSLAEIATSSDKVKDGG----GGNEGS 357 P P PP PPPP P + S K G GGN+ Sbjct: 195 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQ 254 Query: 358 PCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGS 417 PP PG G G P P P Q P P G SR G G Sbjct: 255 GPPPPPGKPQGPPPQGGNKPQGPPPPGKP--QGPPPQGGSKSRSSRSPPGKPQGPPPQG- 311 Query: 418 FGHLHGHPGPGPGPTTGP 435 G+ P P PG GP Sbjct: 312 -GNQPQGPPPPPGKPQGP 328 Score = 72.8 bits (177), Expect = 7e-13 Identities = 68/224 (30%), Positives = 81/224 (36%), Gaps = 39/224 (17%) Query: 202 DEPQKPEDKGDPEGPEAGGAEQKAASGCE--RLQGPPTPAGKETEGSLSDSDFKEPPSEG 259 ++PQ P G P+GP G + +S + QGPP G + +G PP G Sbjct: 148 NKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGP--------PPPPG 199 Query: 260 RLDALQGPPRTGGPSPAGPAAARLAEDPAP---------HYPAGAPAPGPHPAAGEVPPG 310 + QGPP GG P GP + P P P G P GP P G P G Sbjct: 200 KP---QGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKP-QGPPPQGGNQPQG 255 Query: 311 -PGGPSVIHSPP---------PPPPPAVLAKPKLWSLAEIATSSDKVKDGG----GGNEG 356 P P PP PPPP P ++ S K G GGN+ Sbjct: 256 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQP 315 Query: 357 SPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSR 400 PP PG G G P P P Q P P G SR Sbjct: 316 QGPPPPPGKPQGPPPQGGNKPQGPPPPGKP--QGPPPQGGSKSR 357 Score = 72.8 bits (177), Expect = 7e-13 Identities = 70/218 (32%), Positives = 80/218 (36%), Gaps = 45/218 (20%) Query: 202 DEPQKPEDKGDPEGPEAGG--AEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEG 259 ++PQ P G P+GP G Q A S + QGPP G + +G PP G Sbjct: 210 NKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGP--------PPPPG 261 Query: 260 RLDALQGPPRTGGPSPAGPAAARLAEDPAP---------HYPAGAPAPGPHPAAGEVPPG 310 + QGPP GG P GP + P P P G P GP P G P G Sbjct: 262 KP---QGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKP-QGPPPQGGNQPQG 317 Query: 311 -PGGPSVIHSPPP--------PPPPAVL--AKPKLWSLAEIATSSDKVKDG----GGGNE 355 P P PPP PPPP P+ S + A S G G N Sbjct: 318 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNP 377 Query: 356 GSPCPPCPG-------PIAGQALGGSRASPAPAPSRSP 386 P PP G P AGQ G R PSR P Sbjct: 378 QGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 415 Score = 66.6 bits (161), Expect = 5e-11 Identities = 77/277 (27%), Positives = 98/277 (35%), Gaps = 50/277 (18%) Query: 182 RNRSEDEEEEENIDLEKNDE--------DEPQ-KPEDKGDPEGP--EAGGAEQKAASGCE 230 +N +ED +EE+ L + ++PQ P G P+GP + G Q Sbjct: 17 QNLNEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPG 76 Query: 231 RLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDAL--------QGPPRTGGPSPAGPAAAR 282 + QGPP G + +G + PP +G QGPP GG P GP Sbjct: 77 KPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGP---- 132 Query: 283 LAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIAT 342 P P P G P G + G PPG P PPP K + ++ Sbjct: 133 ---PPPPGKPQGPPPQGGNKPQGPPPPG---------KPQGPPPQGDNKSR-------SS 173 Query: 343 SSDKVKDGG----GGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVL 398 S K G GGN+ PP PG G G P P P Q P P G Sbjct: 174 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP--QGPPPQGDNK 231 Query: 399 SRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGP 435 S+ G G G+ P P PG GP Sbjct: 232 SQSARSPPGKPQGPPPQG--GNQPQGPPPPPGKPQGP 266 >gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] Length = 1466 Score = 68.6 bits (166), Expect = 1e-11 Identities = 86/281 (30%), Positives = 100/281 (35%), Gaps = 51/281 (18%) Query: 198 KNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPS 257 K ++ P K ++G P GP G K +G QGPP P G G D+ P Sbjct: 584 KGNDGAPGKNGERGGPGGPGPQGPPGK--NGETGPQGPPGPTGPG--GDKGDTGPPGPQG 639 Query: 258 EGRLDALQGPP----RTGGPSPAGPAAARLAEDPAPHYPAGAP----------APGPHPA 303 L GPP + G P P G A A A P AGAP APG Sbjct: 640 LQGLPGTGGPPGENGKPGEPGPKGDAGAPGA--PGGKGDAGAPGERGPPGLAGAPGLRGG 697 Query: 304 AGEVPPGPGGPSVIHSPPPPP----PPAVLAKP-KLWSLAEIATSSDKVKDGGGGNEGSP 358 AG PPGP G PP PP P + P + L DK + GG G +G P Sbjct: 698 AG--PPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVP 755 Query: 359 CPPCP----GPI-----AGQ-------------ALGGSRASPAPAPSRSPSAQCPFPGGT 396 P GPI AGQ + G R SP P FPG Sbjct: 756 GKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAP 815 Query: 397 VLS-RPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436 + P PG G + G PG G GP PG Sbjct: 816 GQNGEPGGKGERGAPGEKGEGGPPGVAGPPG-GSGPAGPPG 855 Score = 60.1 bits (144), Expect = 4e-09 Identities = 78/272 (28%), Positives = 94/272 (34%), Gaps = 56/272 (20%) Query: 204 PQKPEDKGDPEGPEA--GGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRL 261 P P +G P GP+ G + + A+G +GPP P G + EP +G Sbjct: 962 PGMPGPRGSP-GPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAG----EPGRDGNP 1016 Query: 262 DALQGPPRTGGP----------SPAGPAAARLAEDPAPHYPAG-----------APAPGP 300 + P R G P SP P A P P PAG PA P Sbjct: 1017 GSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAP 1076 Query: 301 HPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCP 360 PA PGP GP + E + K G GN G+P Sbjct: 1077 GPAGSRGAPGPQGP----------------RGDKGETGERGAAGIKGHRGFPGNPGAPGS 1120 Query: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYT-----NY 415 P P AGQ G+ SP PA R P PG S P P + Sbjct: 1121 PGP---AGQQ--GAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSE 1175 Query: 416 GSFGHLHGHPGPGPGPTTGPGSHFNGLNQTVL 447 GS GH G PGP PGP PG G+ + Sbjct: 1176 GSPGH-PGQPGP-PGPPGAPGPCCGGVGAAAI 1205 Score = 58.2 bits (139), Expect = 2e-08 Identities = 79/294 (26%), Positives = 93/294 (31%), Gaps = 75/294 (25%) Query: 197 EKNDEDEPQKPEDKGDPEGPEAGGAEQK-AASGCERLQGPPTPAGKETE----------- 244 E+ P DKG+P GP A G K G GPP PAG+ + Sbjct: 730 ERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPG 789 Query: 245 -----GSLSDSDFKEPP---------------------------SEGRLDALQGPPRTGG 272 GS + PP EG + GPP GG Sbjct: 790 IAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPP--GG 847 Query: 273 PSPAGPAAAR--LAEDPAPHYPAGAPAPG----PHPAAGEVPPGPGGPSVIHSPPPPPPP 326 PAGP + E +P P A PG P P PGP GPS PP P Sbjct: 848 SGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGP 907 Query: 327 AVLAKPKLWSLAEIATSSDKVKDGGGGNEGSP----CPPCPGPIAGQALGGSRASPAPAP 382 A + S K G G +GSP P PGP+ + G+R P Sbjct: 908 A----GNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPG 963 Query: 383 SRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436 P P P G G + L G GP PGP PG Sbjct: 964 MPGPRGS-PGPQGV-------------KGESGKPGANGLSGERGP-PGPQGLPG 1002 Score = 51.2 bits (121), Expect = 2e-06 Identities = 79/262 (30%), Positives = 92/262 (35%), Gaps = 49/262 (18%) Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE-TEGSLSDS----DFKEPPSE 258 P P G+P P G+ K GPP PAG GS S D +P + Sbjct: 881 PGPPGSNGNPGPPGPSGSPGK--------DGPPGPAGNTGAPGSPGVSGPKGDAGQPGEK 932 Query: 259 GRLDALQGPPRTGGP-SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEV-PPGPGGPSV 316 G A QGPP GP AG AR P P P +PGP GE PG G S Sbjct: 933 GSPGA-QGPPGAPGPLGIAGITGARGLAGP-PGMPGPRGSPGPQGVKGESGKPGANGLSG 990 Query: 317 IHSPPPPPPPAVLAKPKLWSLAEIATSSDKV--KDG--GG----------------GNEG 356 PP P LA + SD + +DG GG G+ G Sbjct: 991 ERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPG 1050 Query: 357 SPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYG 416 P P P +G A PA AP + S P P G + G T Sbjct: 1051 PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDK----------GETGER 1100 Query: 417 SFGHLHGHPG-PG-PGPTTGPG 436 + GH G PG PG PG Sbjct: 1101 GAAGIKGHRGFPGNPGAPGSPG 1122 Score = 50.4 bits (119), Expect = 3e-06 Identities = 69/242 (28%), Positives = 82/242 (33%), Gaps = 69/242 (28%) Query: 203 EPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLD 262 EP K KG+P GP ++ +G P P K +G D EP + G Sbjct: 433 EPGKNGAKGEP-GPRG----ERGEAGI-----PGVPGAKGEDGK--DGSPGEPGANGLPG 480 Query: 263 ALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAP-GPHPAAGEVPPG----PGGPSVI 317 A G PAGP + PA GAP P GP AAGE PG PGGP + Sbjct: 481 AAGERGAPGFRGPAGPNGIPGEKGPAGE--RGAPGPAGPRGAAGE--PGRDGVPGGPGMR 536 Query: 318 HSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRAS 377 P P GG G++G P PP Q G Sbjct: 537 GMPGSP--------------------------GGPGSDGKPGPP-----GSQGESGRPGP 565 Query: 378 PAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGP-GPGPTTGPG 436 P P+ R FPG N G+ G GP GPGP PG Sbjct: 566 PGPSGPRGQPGVMGFPGPK----------------GNDGAPGKNGERGGPGGPGPQGPPG 609 Query: 437 SH 438 + Sbjct: 610 KN 611 Score = 47.0 bits (110), Expect = 4e-05 Identities = 50/184 (27%), Positives = 63/184 (34%), Gaps = 27/184 (14%) Query: 207 PEDKGDPEGPEAGGAE-QKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQ 265 P ++G P P A GA A G + GPP P G T G P ++G + Sbjct: 305 PGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPG--TAGFPGS-----PGAKGEVGPAG 357 Query: 266 GPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPG---------PGGPSV 316 P G P G +P P AGA P P P G PG P + Sbjct: 358 SPGSNGAPGQRG--------EPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGL 409 Query: 317 IHSPPPPPPPAVLAKPKL-WSLAEIATSSDKVKDGGGGNEG-SPCPPCPGPIAGQALGGS 374 + + PP P P L E + K + G G G + P PG GS Sbjct: 410 MGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGS 469 Query: 375 RASP 378 P Sbjct: 470 PGEP 473 Score = 46.6 bits (109), Expect = 5e-05 Identities = 50/193 (25%), Positives = 62/193 (32%), Gaps = 34/193 (17%) Query: 197 EKNDEDEPQKPEDKGDPEGP----EAGGAEQKAASGCERLQGPPTPAGKE-TEGSLSDSD 251 ++ + P P G P P AG + + SG G P PAG G Sbjct: 1033 DRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRG 1092 Query: 252 FKEPPSEGRLDALQG-------PPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAA 304 K E ++G P G P PAG A P P P G P Sbjct: 1093 DKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGA--IGSPGPAGPRG-------PVG 1143 Query: 305 GEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPG 364 PPG G S P PP P ++ +G G+ G P PP P Sbjct: 1144 PSGPPGKDGTSGHPGPIGPPGPR-------------GNRGERGSEGSPGHPGQPGPPGPP 1190 Query: 365 PIAGQALGGSRAS 377 G GG A+ Sbjct: 1191 GAPGPCCGGVGAA 1203 Score = 40.8 bits (94), Expect = 0.003 Identities = 62/237 (26%), Positives = 74/237 (31%), Gaps = 57/237 (24%) Query: 234 GPPTPAGKETE-GSLSDSDFKEPPSEGRLDALQGPP-RTGGPSPAGPAAARLAEDPAPHY 291 GPP P G GS ++ PP E GPP G P+GP A + E P Sbjct: 180 GPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGP-AGKDGESGRPGR 238 Query: 292 PAGAPAPGPHPAAGE--VPPGPGG---------------------------PSVIHSPPP 322 P PGP G +P PG P +P P Sbjct: 239 PGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGP 298 Query: 323 PPP---PAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPA 379 P P +P L A + DG G++G P PP P AG G A Sbjct: 299 MGPRGAPGERGRPGLPGAA-----GARGNDGARGSDGQPGPPGPPGTAGFP-GSPGAKGE 352 Query: 380 PAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436 P+ SP + AP G G PGP PG PG Sbjct: 353 VGPAGSPGSN---------------GAPGQRGEPGPQGHAGAQGPPGP-PGINGSPG 393 Score = 40.4 bits (93), Expect = 0.004 Identities = 54/193 (27%), Positives = 63/193 (32%), Gaps = 16/193 (8%) Query: 204 PQKPEDKGDPEGPEA--GGAEQKAASGCERLQGPPT---PAG----KETEGSLSDSDFKE 254 P P P GP G + + G L GPP PAG +G Sbjct: 214 PPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNG 273 Query: 255 PPSEGRLDALQG----PPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAG-EVPP 309 E L+G P G P P GP A E P P A A G A G + P Sbjct: 274 EKGETGAPGLKGENGLPGENGAPGPMGPRGAP-GERGRPGLPGAAGARGNDGARGSDGQP 332 Query: 310 GPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQ 369 GP GP P P P S + + G G+ G+ PP P I G Sbjct: 333 GPPGPPGTAGFPGSPGAKGEVGPA-GSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGS 391 Query: 370 ALGGSRASPAPAP 382 G PA P Sbjct: 392 PGGKGEMGPAGIP 404 Score = 36.2 bits (82), Expect = 0.068 Identities = 51/206 (24%), Positives = 58/206 (28%), Gaps = 47/206 (22%) Query: 265 QGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGP------------- 311 QGP G P P G R + P P +PGP P GP Sbjct: 105 QGPK--GDPGPPG-IPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVK 161 Query: 312 ---------GGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP- 361 G P P PP PP P S + G G G P PP Sbjct: 162 SGVAVGGLAGYPGPAGPPGPPGPPGTSGHP--GSPGSPGYQGPPGEPGQAGPSGPPGPPG 219 Query: 362 CPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHL 421 GP G P R PG + P P +PG + F Sbjct: 220 AIGPSGPAGKDGESGRPGRPGERG------LPGPPGIKGPA--GIPGFPGMKGHRGFDGR 271 Query: 422 HGHPG----PG-------PGPTTGPG 436 +G G PG PG PG Sbjct: 272 NGEKGETGAPGLKGENGLPGENGAPG 297 Score = 33.5 bits (75), Expect = 0.44 Identities = 49/168 (29%), Positives = 56/168 (33%), Gaps = 19/168 (11%) Query: 279 AAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAK----PKL 334 A R P P G P P P P PG P SP P PP + P+ Sbjct: 94 APTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPG---SPGSPGPPGICESCPTGPQN 150 Query: 335 WSLAEIATSSDKVKDG--GGGNEGSPCPP-CPGPIAGQALGGSRASPAPAPSRSPSAQCP 391 +S S VK G GG G P P PGP G SP + P + Sbjct: 151 YS---PQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPG 207 Query: 392 FPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPG----PGPGPTTGP 435 G + P P P + G G G PG PGP GP Sbjct: 208 QAGPSGPPGPPGAIGPSGPAGKD-GESGR-PGRPGERGLPGPPGIKGP 253 Score = 32.0 bits (71), Expect = 1.3 Identities = 45/165 (27%), Positives = 53/165 (32%), Gaps = 18/165 (10%) Query: 273 PSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGG-PSVIHSPPPPPPPAVLAK 331 P+P P A P P P G P + PGP G P P P P Sbjct: 75 PNPEIPFGECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGS 134 Query: 332 PKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCP 391 P + E + G SP +G A+GG P PA P P Sbjct: 135 PGPPGICESCPT--------GPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGP----P 182 Query: 392 FPGGTVLSRPLYYTAPFYPGYTN-YGSFGHLHGHPGPGPGPTTGP 435 P GT + +P PGY G G PGP GP Sbjct: 183 GPPGT----SGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGP 223 Score = 29.3 bits (64), Expect = 8.3 Identities = 30/100 (30%), Positives = 34/100 (34%), Gaps = 14/100 (14%) Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE----TEGSLSDSDFKEPPSEGRLD 262 P P GP +G + SG GPP P G +EGS PP Sbjct: 1135 PAGPRGPVGP-SGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPP------ 1187 Query: 263 ALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHP 302 GPP GP G AA +A AP G P Sbjct: 1188 ---GPPGAPGPCCGGVGAAAIAGIGGEKAGGFAPYYGDEP 1224 >gi|56549694 enabled homolog isoform a [Homo sapiens] Length = 591 Score = 67.8 bits (164), Expect = 2e-11 Identities = 52/176 (29%), Positives = 73/176 (41%), Gaps = 26/176 (14%) Query: 168 RRRLKKENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPE----DKGDPEGPEAGGAEQ 223 + RL+++ ++ R E E +E +D E+ + E ++ E ++ + E E EQ Sbjct: 201 QERLERQERL-----ERQERLERQERLDRERQERQERERLERLERERQERERQEQLEREQ 255 Query: 224 KAASGCERLQGPPTPAGKET--EGSLSDSDFKEPPSEGRLDALQGPPRTG---------- 271 R+ PA ET L DS EP + + P + G Sbjct: 256 LEWERERRISSAAAPASVETPLNSVLGDSSASEPGLQAASQPAETPSQQGIVLGPLAPPP 315 Query: 272 -GPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPP 326 P P GPA A +A P P G P P P P+ G PP P P PPPPPPP Sbjct: 316 PPPLPPGPAQASVALPPPP----GPPPPPPLPSTGPPPPPPPPPLPNQVPPPPPPP 367 >gi|39930375 enabled homolog isoform b [Homo sapiens] Length = 570 Score = 67.8 bits (164), Expect = 2e-11 Identities = 52/176 (29%), Positives = 73/176 (41%), Gaps = 26/176 (14%) Query: 168 RRRLKKENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPE----DKGDPEGPEAGGAEQ 223 + RL+++ ++ R E E +E +D E+ + E ++ E ++ + E E EQ Sbjct: 201 QERLERQERL-----ERQERLERQERLDRERQERQERERLERLERERQERERQEQLEREQ 255 Query: 224 KAASGCERLQGPPTPAGKET--EGSLSDSDFKEPPSEGRLDALQGPPRTG---------- 271 R+ PA ET L DS EP + + P + G Sbjct: 256 LEWERERRISSAAAPASVETPLNSVLGDSSASEPGLQAASQPAETPSQQGIVLGPLAPPP 315 Query: 272 -GPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPP 326 P P GPA A +A P P G P P P P+ G PP P P PPPPPPP Sbjct: 316 PPPLPPGPAQASVALPPPP----GPPPPPPLPSTGPPPPPPPPPLPNQVPPPPPPP 367 >gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 preproprotein [Homo sapiens] Length = 331 Score = 67.8 bits (164), Expect = 2e-11 Identities = 78/264 (29%), Positives = 95/264 (35%), Gaps = 47/264 (17%) Query: 182 RNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEA--GGAEQKAASGCERLQGPPTPA 239 +N +ED +EE+ L + P P+ P+GP G + G + QGPP P Sbjct: 17 QNLNEDVSQEESPSLIAGNPQGPS-PQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 75 Query: 240 ---GKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAP 296 G +G S S + PP + QGPP GG P GP P P P G P Sbjct: 76 KPQGPPPQGDKSRSP-RSPPGKP-----QGPPPQGGNQPQGP-------PPPPGKPQGPP 122 Query: 297 APGPHPAAGEVPPG-PGGP----SVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGG 351 G + G PPG P GP SP PP P+ Sbjct: 123 PQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQ------------------ 164 Query: 352 GGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPG 411 GGN+ PP PG G G + P P P Q P P G SR G Sbjct: 165 GGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKP--QGPPPQGD-KSRSSQSPPGKPQG 221 Query: 412 YTNYGSFGHLHGHPGPGPGPTTGP 435 G G+ P P PG GP Sbjct: 222 PPPQG--GNQPQGPPPPPGKPQGP 243 Score = 61.2 bits (147), Expect = 2e-09 Identities = 58/200 (29%), Positives = 65/200 (32%), Gaps = 37/200 (18%) Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263 P+ P K P+ G Q + QGPP GK+ +G + PP +G Sbjct: 151 PRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSR 210 Query: 264 L--------QGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPS 315 QGPP GG P GP P G P GP P G P GP Sbjct: 211 SSQSPPGKPQGPPPQGGNQPQGPPP-----------PPGKP-QGPPPQGGNKPQGP---- 254 Query: 316 VIHSPPP--PPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPG-------PI 366 PPP P P K S G N P PP G P Sbjct: 255 ----PPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPP 310 Query: 367 AGQALGGSRASPAPAPSRSP 386 AGQ G R PSR P Sbjct: 311 AGQPQGPPRPPQGGRPSRPP 330 Score = 46.6 bits (109), Expect = 5e-05 Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 12/112 (10%) Query: 202 DEPQ-KPEDKGDPEGPEA-GGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEG 259 ++PQ P G P+GP GG + + + QGPP G +++ + S + P + Sbjct: 228 NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQ 287 Query: 260 RLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGP 311 + QGPP G +P P A PAG P P P G P P Sbjct: 288 EGNNPQGPPPPAGGNPQQPQAP----------PAGQPQGPPRPPQGGRPSRP 329 >gi|163965366 nascent polypeptide-associated complex alpha subunit isoform a [Homo sapiens] Length = 2078 Score = 67.8 bits (164), Expect = 2e-11 Identities = 70/241 (29%), Positives = 79/241 (32%), Gaps = 31/241 (12%) Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263 P P KG P P A K + PTP P A Sbjct: 931 PASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPA 990 Query: 264 LQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSP--- 320 P GGP+ P A P P G+PA P P PP PS SP Sbjct: 991 ATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAAT 1050 Query: 321 -----PPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPC---PGPIAGQALG 372 P P A L PK AT S K G+P PP P P G A Sbjct: 1051 PLPKGAPTTPAATLPSPK----GGPATPSLK---------GAPTPPAATPPSPKGGPATP 1097 Query: 373 GSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPT 432 + +P P P+A P P G L+ P + AP P T G L P P PT Sbjct: 1098 SPKGAPMP-----PAATPPSPKGG-LATPPHKGAPTTPAATPPSPKGGL-ATPPPKGAPT 1150 Query: 433 T 433 T Sbjct: 1151 T 1151 Score = 59.3 bits (142), Expect = 8e-09 Identities = 62/189 (32%), Positives = 68/189 (35%), Gaps = 29/189 (15%) Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQG 266 P KG P P A K +G PTP PPS L Sbjct: 1235 PSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAAT------------PPS--LKGGLAT 1280 Query: 267 PPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPP---P 323 PP G P+PA PA P GAP P PAA PP P G +PPP P Sbjct: 1281 PPHKGAPNPAVVTPPSPKGGPATSPPKGAPTP---PAA--TPPSPKGSP--GTPPPKGAP 1333 Query: 324 PPPAVL-AKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAP 382 PPAV PK T S K GG S P P P A + G A P+P Sbjct: 1334 TPPAVTPPSPKGTPTLPATTPSSK---GGPTTPSSKEGPTP-PAATPSHKGGPAMTPPSP 1389 Query: 383 SRSPSAQCP 391 R P+ P Sbjct: 1390 KRGPAIPSP 1398 Score = 57.8 bits (138), Expect = 2e-08 Identities = 69/238 (28%), Positives = 84/238 (35%), Gaps = 22/238 (9%) Query: 207 PEDKGDPEG-PEAGGAEQKAASGCERLQGPPT----PAGKETEGSLSDSDFKEPPSEGRL 261 P KG P P GA A+ +G P P G T + + K P+ L Sbjct: 1017 PSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSL 1076 Query: 262 DALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPG----PHPAAG-EVPPGPGGPSV 316 PP PSP G PA P GAP P P P G PP G P+ Sbjct: 1077 KGAPTPPAATPPSPKG--------GPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTT 1128 Query: 317 IHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGG-SR 375 + PP P + P + A + K G P P GG + Sbjct: 1129 PAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLAT 1188 Query: 376 ASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTT 433 SP AP+ +P+A P P G L+ P AP P T G L P P PTT Sbjct: 1189 PSPKGAPT-TPAATPPSPKGG-LATPSPKGAPTTPAATPPSPKGGL-ATPSPKGAPTT 1243 Score = 55.5 bits (132), Expect = 1e-07 Identities = 72/251 (28%), Positives = 86/251 (34%), Gaps = 32/251 (12%) Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPT-PAGK--ETEGSLSDSDFKEPPSEGR 260 P P KG P P A K +G PT PA +G L+ K P+ Sbjct: 1094 PATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTT-- 1151 Query: 261 LDALQGPPRTGG---PSPAGPAAARLAEDPAPH------YPAGAP----APGPHPAAGEV 307 A P GG P P G A P+P P GAP A P P G Sbjct: 1152 -PAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLA 1210 Query: 308 PPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGN---EGSPCPPCPG 364 P P G + PP P LA P ++ GG +G+P PP Sbjct: 1211 TPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAAT 1270 Query: 365 PIA---GQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHL 421 P + G A + +P PA PS + GG S P AP P T G Sbjct: 1271 PPSLKGGLATPPHKGAPNPAVVTPPSPK----GGPATSPP--KGAPTPPAATPPSPKGS- 1323 Query: 422 HGHPGPGPGPT 432 G P P PT Sbjct: 1324 PGTPPPKGAPT 1334 Score = 54.3 bits (129), Expect = 2e-07 Identities = 71/255 (27%), Positives = 85/255 (33%), Gaps = 36/255 (14%) Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPT-PAGK--ETEGSLSDSDFKEPPSEGRLDA 263 P KG P P A K +G PT PA +G L+ K P+ A Sbjct: 1143 PPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTT---PA 1199 Query: 264 LQGPPRTGG---PSPAGPAAARLAEDPAPH------YPAGAP----APGPHPAAGEVPPG 310 P GG PSP G A P+P P GAP A P P G P Sbjct: 1200 ATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPP 1259 Query: 311 PGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGN---EGSPCPPCPGPIA 367 P G + PP LA P A + GG +G+P PP P + Sbjct: 1260 PKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPS 1319 Query: 368 GQALGGSRASPAPAPSRSPSAQC-PFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPG 426 + GS +P P + +P A P P GT P P T G Sbjct: 1320 PK---GSPGTPPPKGAPTPPAVTPPSPKGT----------PTLPATTPSSKGGPTTPSSK 1366 Query: 427 PGPGPTTGPGSHFNG 441 GP P SH G Sbjct: 1367 EGPTPPAATPSHKGG 1381 Score = 43.5 bits (101), Expect = 4e-04 Identities = 59/249 (23%), Positives = 74/249 (29%), Gaps = 54/249 (21%) Query: 234 GPPTPAGK-ETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYP 292 GP TP G + S ++ F S + P T P+P P A P P Sbjct: 816 GPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPSAVTPLSP 875 Query: 293 AGAPAPG-----------PHPAAGEVPPGP----------GGPSVIHSPP---------- 321 G P P P G P P P + P Sbjct: 876 KGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPS 935 Query: 322 ----PPPPPAVLAKPK--------LWSLAEIATSSDKVKDGGG--GNEGSPCPPC---PG 364 P PP A PK W+ A + K G +G+P PP P Sbjct: 936 PKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPS 995 Query: 365 PIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGH 424 P G A + +P P P+ P P G+ + P A P T G Sbjct: 996 PKGGPATPSPKGAPTP-----PAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAAT 1050 Query: 425 PGPGPGPTT 433 P P PTT Sbjct: 1051 PLPKGAPTT 1059 Score = 40.4 bits (93), Expect = 0.004 Identities = 54/202 (26%), Positives = 74/202 (36%), Gaps = 30/202 (14%) Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263 P P KGDP P K A P TP +E + S D PP+ + Sbjct: 1393 PAIPSPKGDPTSPAVIPLSPKKA--------PATPVTREGAATPSKGDLT-PPAVTPVSL 1443 Query: 264 LQGPPRT---GGPS-------PAGPAAARLA--EDPAPHYPAGAPAPGPHPAAGEVPPGP 311 + P + GGP+ P PA + E PAP A + +P PA P Sbjct: 1444 KKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAP 1503 Query: 312 GGPSVIHSPPP--PPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPC---PGPI 366 P+VI S P P P+ P +A AT K + + PP P P Sbjct: 1504 TLPAVIPSSPKEVPATPSSRRDP----IAPTATLLSKKTPATLAPKEALIPPAMTVPSPK 1559 Query: 367 AGQALGGSRASPAPAPSRSPSA 388 A+ + +PA S+ S+ Sbjct: 1560 KTPAIPTPKEAPATPSSKEASS 1581 Score = 40.0 bits (92), Expect = 0.005 Identities = 46/173 (26%), Positives = 60/173 (34%), Gaps = 27/173 (15%) Query: 233 QGPPTPAGKETEG--SLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPH 290 + P TP+ KE +++ S +K PS L PP PSP P+P Sbjct: 1569 EAPATPSSKEASSPPAVTPSTYKGAPSPKELLI---PPAVTSPSPKEAPTPPAVTPPSPE 1625 Query: 291 YPAGAPAPGPHPAAGEVPP-----GPGGPSVIHS-------------PPPPPPPA---VL 329 PAP P + V P P P+ + P P A VL Sbjct: 1626 KGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPTALKEVL 1685 Query: 330 AKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAP 382 P S I + K + SP P CP P A G ++ APAP Sbjct: 1686 VAPAPESTPIITAPTRKGPQTKKSSATSP-PICPDPSAKNGSKGPLSTVAPAP 1737 Score = 38.1 bits (87), Expect = 0.018 Identities = 43/192 (22%), Positives = 52/192 (27%), Gaps = 20/192 (10%) Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263 P KG P P A K + G +G PTP PPS Sbjct: 1301 PATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVT------------PPSPKGTPT 1348 Query: 264 LQG--PPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPP 321 L P GGP+ P + G P P G P P G + Sbjct: 1349 LPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVI 1408 Query: 322 PPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPA-- 379 P P A P A + D P P G A S+ P Sbjct: 1409 PLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLP 1468 Query: 380 ----PAPSRSPS 387 P+P P+ Sbjct: 1469 AVTPPSPKEPPA 1480 Score = 32.3 bits (72), Expect = 0.99 Identities = 65/251 (25%), Positives = 77/251 (30%), Gaps = 49/251 (19%) Query: 237 TPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTG-----GPSPAGPAAARLAEDPAPHY 291 T A EG++S + P EG L L P PSP A AP Sbjct: 671 TTASPFLEGTVSLAPKNHPVKEGTLTTLPLVPTASENCPVAPSPQNTCAPLATLVLAPEI 730 Query: 292 PAGAPAPGPHPAAGEVPPG--------------PGGPSVIHSPPPPPPPAVLAKPK--LW 335 P P+P PA PPG P S P + A K L Sbjct: 731 PKSVPSPSLPPAG--TPPGTKKVDGISHTSALAPVASSPKECPTEDSGASATASSKGTLT 788 Query: 336 SLAEI----------ATSSDKVKDGGG------GNEGSPCPPCPG---PIAGQALGGSRA 376 LA+ T K G GN SP P P + GS+ Sbjct: 789 YLADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKD 848 Query: 377 SPAPAPSRSPSAQ--CPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTG 434 SPA S +P + P P P T P P T S +L P P GP T Sbjct: 849 SPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLP--PKETPTPSVVNL---PFPKEGPATP 903 Query: 435 PGSHFNGLNQT 445 L+ T Sbjct: 904 APKQAPALSMT 914 >gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo sapiens] Length = 1751 Score = 67.0 bits (162), Expect = 4e-11 Identities = 74/270 (27%), Positives = 93/270 (34%), Gaps = 49/270 (18%) Query: 198 KNDEDEPQKPEDKGDPEG---PEAG--GAEQKAASGCERLQGPPTPAGKETEGSLSDSDF 252 K + P +KG+P P+ G G QK A G +GPP P G+ G + F Sbjct: 1165 KGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRP--GYKGEIGF 1222 Query: 253 KEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA--------------P 298 P ++ L+G G + G + P P P G P P Sbjct: 1223 PGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRP 1282 Query: 299 GPHPAAG-EVPPGPGGPSVIHSPPPPPPPAVL--------AKPKLWSLAEIATSSDKVKD 349 GP G + PPGP G PP PP K + + ++ + Sbjct: 1283 GPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEP 1342 Query: 350 GGGGNEGSPCPPCPGPIAGQALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPLYYTAPF 408 GGGG GS P PGP G R P P P P P G P Sbjct: 1343 GGGGFFGSSLPGPPGP------PGPRGYPGIPGPKGESIRGQPGPPG-----------PQ 1385 Query: 409 YPGYTNYGSFGHLHGHPGPGPGPTTGPGSH 438 P Y G PGP PGP + PG H Sbjct: 1386 GPPGIGYEGRQGPPGPPGP-PGPPSFPGPH 1414 Score = 57.0 bits (136), Expect = 4e-08 Identities = 77/251 (30%), Positives = 88/251 (35%), Gaps = 40/251 (15%) Query: 212 DPEGPEAGGAEQKAASGCERLQGPPTPAG------KETEGSLSDSDFKEPPSEGRLDALQ 265 D EG GG + +A G GPP P G + ++ SD P + + Sbjct: 885 DMEGSGFGG-DLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 943 Query: 266 GPPRTGG-PSPAGPAAAR-----------LAEDPAPHYPAGAPAPGPHPAAGEV----PP 309 GPP G P P GP L E AP + APGP A GE P Sbjct: 944 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP 1003 Query: 310 GPGGPSVIHSPPPPPPPAVLA--------KPKLWSLAEIATSSDKVKDGGGGNEGSP-CP 360 GP GP PP PP P + A WS A A + G G +G P P Sbjct: 1004 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSA-DGPQGPPGLPGLKGDPGVP 1062 Query: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420 PG G P P R A P G SR PG G G Sbjct: 1063 GLPGAKGEVGADGVPGFPG-LPGREGIAGPQGPKGDRGSR----GEKGDPGKDGVGQPG- 1116 Query: 421 LHGHPGPGPGP 431 L G PGP PGP Sbjct: 1117 LPGPPGP-PGP 1126 Score = 48.9 bits (115), Expect = 1e-05 Identities = 80/332 (24%), Positives = 112/332 (33%), Gaps = 82/332 (24%) Query: 30 GPRTDELGRSSSGSAFSPYAGSTA-----------FTAPS-----PGYNSHLQYGADPAA 73 GP+ + + GS FSP G+ F P PGY + + P Sbjct: 1172 GPKGE---KGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 1228 Query: 74 AAAAAFSSYVGSPYDHTPG--MAGSLGYHPYAAPLGSYPYGDPAYRKNATRDATATLKAW 131 G P D + G M G G P P P G P Y N +++ Sbjct: 1229 PGMNGLKGEKGEPGDASLGFGMRGMPG--PPGPPGPPGPPGTPVYDSNVFAESSRPGPPG 1286 Query: 132 LNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNRSEDEEEE 191 L ++ P P KG A+ + P + + E E Sbjct: 1287 LPGNQGPPGP-KG----------------------AKGEVGPPGPPGQFPFDFLQLEAEM 1323 Query: 192 ENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSD 251 + EK D + + ++G+P G G+ L GPP P G + Sbjct: 1324 KG---EKGDRGDAGQKGERGEPGGGGFFGSS---------LPGPPGPPGPRGYPGI---- 1367 Query: 252 FKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA----PGPHPAAGEV 307 P +G ++++G P G P P GP P P G P PGPH V Sbjct: 1368 ---PGPKG--ESIRGQP--GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISV 1420 Query: 308 PPGPGGPSVIHSPPPPPPPAVLAKP---KLWS 336 PGP GP P PP PP + +LW+ Sbjct: 1421 -PGPPGP-----PGPPGPPGTMGASSGVRLWA 1446 Score = 47.0 bits (110), Expect = 4e-05 Identities = 70/243 (28%), Positives = 78/243 (32%), Gaps = 63/243 (25%) Query: 237 TPAGKETEGSLSDSDFKE--PPSEGRLD-----ALQGPPRTGGP-SPAGPAAARLAEDPA 288 TP G+ EG L + P GR L GPP P SP GPA L P Sbjct: 743 TPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPG 802 Query: 289 PHYPAGAPAPGPHPAA-GEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKV 347 P P G P P GE PG P P P P ++ DK Sbjct: 803 PQGPPGPPGRDGTPGRDGE----PGDPGEDGKPGDTGPQGFPGTP-----GDVGPKGDKG 853 Query: 348 KDGGG-----GNEGSPCPPCPG---------PIAG-------QALGGSRASPA-PAPSRS 385 G G G +G P PP P + G +AL G R P P P Sbjct: 854 DPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGV 913 Query: 386 P------------SAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTT 433 P S+ P P G P PG F L G PGP PG Sbjct: 914 PGLPGEPGRFGVNSSDVPGPAG----------LPGVPGREGPPGFPGLPGPPGP-PGREG 962 Query: 434 GPG 436 PG Sbjct: 963 PPG 965 Score = 41.6 bits (96), Expect = 0.002 Identities = 68/239 (28%), Positives = 78/239 (32%), Gaps = 34/239 (14%) Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSD-SDFKEPPSEGRLD 262 PQ P KGD G K G L GPP P G S D S P EGR Sbjct: 1091 PQGP--KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR-- 1146 Query: 263 ALQGPPRTGGPSPAGPAAARLAE----DPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIH 318 P G P PAGP ++ P P G P P G + GP Sbjct: 1147 ----PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGAL--GPAQKGAKG 1200 Query: 319 SPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALG-GSRAS 377 P PP +P EI + G G +G P +LG G R Sbjct: 1201 EPGFRGPPGPYGRPGY--KGEIGFPGRPGRPGMNGLKGEKGEP-----GDASLGFGMRGM 1253 Query: 378 PAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436 P P P P P GT + + PG L G+ GP PGP G Sbjct: 1254 PGPPGPPGP----PGPPGTPVYDSNVFAESSRPGPPG------LPGNQGP-PGPKGAKG 1301 >gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo sapiens] Length = 1336 Score = 67.0 bits (162), Expect = 4e-11 Identities = 74/270 (27%), Positives = 93/270 (34%), Gaps = 49/270 (18%) Query: 198 KNDEDEPQKPEDKGDPEG---PEAG--GAEQKAASGCERLQGPPTPAGKETEGSLSDSDF 252 K + P +KG+P P+ G G QK A G +GPP P G+ G + F Sbjct: 750 KGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRP--GYKGEIGF 807 Query: 253 KEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA--------------P 298 P ++ L+G G + G + P P P G P P Sbjct: 808 PGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRP 867 Query: 299 GPHPAAG-EVPPGPGGPSVIHSPPPPPPPAVL--------AKPKLWSLAEIATSSDKVKD 349 GP G + PPGP G PP PP K + + ++ + Sbjct: 868 GPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEP 927 Query: 350 GGGGNEGSPCPPCPGPIAGQALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPLYYTAPF 408 GGGG GS P PGP G R P P P P P G P Sbjct: 928 GGGGFFGSSLPGPPGP------PGPRGYPGIPGPKGESIRGQPGPPG-----------PQ 970 Query: 409 YPGYTNYGSFGHLHGHPGPGPGPTTGPGSH 438 P Y G PGP PGP + PG H Sbjct: 971 GPPGIGYEGRQGPPGPPGP-PGPPSFPGPH 999 Score = 57.0 bits (136), Expect = 4e-08 Identities = 77/251 (30%), Positives = 88/251 (35%), Gaps = 40/251 (15%) Query: 212 DPEGPEAGGAEQKAASGCERLQGPPTPAG------KETEGSLSDSDFKEPPSEGRLDALQ 265 D EG GG + +A G GPP P G + ++ SD P + + Sbjct: 470 DMEGSGFGG-DLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 528 Query: 266 GPPRTGG-PSPAGPAAAR-----------LAEDPAPHYPAGAPAPGPHPAAGEV----PP 309 GPP G P P GP L E AP + APGP A GE P Sbjct: 529 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP 588 Query: 310 GPGGPSVIHSPPPPPPPAVLA--------KPKLWSLAEIATSSDKVKDGGGGNEGSP-CP 360 GP GP PP PP P + A WS A A + G G +G P P Sbjct: 589 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSA-DGPQGPPGLPGLKGDPGVP 647 Query: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420 PG G P P R A P G SR PG G G Sbjct: 648 GLPGAKGEVGADGVPGFPG-LPGREGIAGPQGPKGDRGSR----GEKGDPGKDGVGQPG- 701 Query: 421 LHGHPGPGPGP 431 L G PGP PGP Sbjct: 702 LPGPPGP-PGP 711 Score = 48.9 bits (115), Expect = 1e-05 Identities = 80/332 (24%), Positives = 112/332 (33%), Gaps = 82/332 (24%) Query: 30 GPRTDELGRSSSGSAFSPYAGSTA-----------FTAPS-----PGYNSHLQYGADPAA 73 GP+ + + GS FSP G+ F P PGY + + P Sbjct: 757 GPKGE---KGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 813 Query: 74 AAAAAFSSYVGSPYDHTPG--MAGSLGYHPYAAPLGSYPYGDPAYRKNATRDATATLKAW 131 G P D + G M G G P P P G P Y N +++ Sbjct: 814 PGMNGLKGEKGEPGDASLGFGMRGMPG--PPGPPGPPGPPGTPVYDSNVFAESSRPGPPG 871 Query: 132 LNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNRSEDEEEE 191 L ++ P P KG A+ + P + + E E Sbjct: 872 LPGNQGPPGP-KG----------------------AKGEVGPPGPPGQFPFDFLQLEAEM 908 Query: 192 ENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSD 251 + EK D + + ++G+P G G+ L GPP P G + Sbjct: 909 KG---EKGDRGDAGQKGERGEPGGGGFFGSS---------LPGPPGPPGPRGYPGI---- 952 Query: 252 FKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA----PGPHPAAGEV 307 P +G ++++G P G P P GP P P G P PGPH V Sbjct: 953 ---PGPKG--ESIRGQP--GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISV 1005 Query: 308 PPGPGGPSVIHSPPPPPPPAVLAKP---KLWS 336 PGP GP P PP PP + +LW+ Sbjct: 1006 -PGPPGP-----PGPPGPPGTMGASSGVRLWA 1031 Score = 47.0 bits (110), Expect = 4e-05 Identities = 70/243 (28%), Positives = 78/243 (32%), Gaps = 63/243 (25%) Query: 237 TPAGKETEGSLSDSDFKE--PPSEGRLD-----ALQGPPRTGGP-SPAGPAAARLAEDPA 288 TP G+ EG L + P GR L GPP P SP GPA L P Sbjct: 328 TPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPG 387 Query: 289 PHYPAGAPAPGPHPAA-GEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKV 347 P P G P P GE PG P P P P ++ DK Sbjct: 388 PQGPPGPPGRDGTPGRDGE----PGDPGEDGKPGDTGPQGFPGTP-----GDVGPKGDKG 438 Query: 348 KDGGG-----GNEGSPCPPCPG---------PIAG-------QALGGSRASPA-PAPSRS 385 G G G +G P PP P + G +AL G R P P P Sbjct: 439 DPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGV 498 Query: 386 P------------SAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTT 433 P S+ P P G P PG F L G PGP PG Sbjct: 499 PGLPGEPGRFGVNSSDVPGPAG----------LPGVPGREGPPGFPGLPGPPGP-PGREG 547 Query: 434 GPG 436 PG Sbjct: 548 PPG 550 Score = 41.6 bits (96), Expect = 0.002 Identities = 68/239 (28%), Positives = 78/239 (32%), Gaps = 34/239 (14%) Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSD-SDFKEPPSEGRLD 262 PQ P KGD G K G L GPP P G S D S P EGR Sbjct: 676 PQGP--KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR-- 731 Query: 263 ALQGPPRTGGPSPAGPAAARLAE----DPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIH 318 P G P PAGP ++ P P G P P G + GP Sbjct: 732 ----PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGAL--GPAQKGAKG 785 Query: 319 SPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALG-GSRAS 377 P PP +P EI + G G +G P +LG G R Sbjct: 786 EPGFRGPPGPYGRPGY--KGEIGFPGRPGRPGMNGLKGEKGEP-----GDASLGFGMRGM 838 Query: 378 PAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436 P P P P P GT + + PG L G+ GP PGP G Sbjct: 839 PGPPGPPGP----PGPPGTPVYDSNVFAESSRPGPPG------LPGNQGP-PGPKGAKG 886 >gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo sapiens] Length = 1516 Score = 67.0 bits (162), Expect = 4e-11 Identities = 74/270 (27%), Positives = 93/270 (34%), Gaps = 49/270 (18%) Query: 198 KNDEDEPQKPEDKGDPEG---PEAG--GAEQKAASGCERLQGPPTPAGKETEGSLSDSDF 252 K + P +KG+P P+ G G QK A G +GPP P G+ G + F Sbjct: 930 KGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRP--GYKGEIGF 987 Query: 253 KEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA--------------P 298 P ++ L+G G + G + P P P G P P Sbjct: 988 PGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRP 1047 Query: 299 GPHPAAG-EVPPGPGGPSVIHSPPPPPPPAVL--------AKPKLWSLAEIATSSDKVKD 349 GP G + PPGP G PP PP K + + ++ + Sbjct: 1048 GPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEP 1107 Query: 350 GGGGNEGSPCPPCPGPIAGQALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPLYYTAPF 408 GGGG GS P PGP G R P P P P P G P Sbjct: 1108 GGGGFFGSSLPGPPGP------PGPRGYPGIPGPKGESIRGQPGPPG-----------PQ 1150 Query: 409 YPGYTNYGSFGHLHGHPGPGPGPTTGPGSH 438 P Y G PGP PGP + PG H Sbjct: 1151 GPPGIGYEGRQGPPGPPGP-PGPPSFPGPH 1179 Score = 57.0 bits (136), Expect = 4e-08 Identities = 77/251 (30%), Positives = 88/251 (35%), Gaps = 40/251 (15%) Query: 212 DPEGPEAGGAEQKAASGCERLQGPPTPAG------KETEGSLSDSDFKEPPSEGRLDALQ 265 D EG GG + +A G GPP P G + ++ SD P + + Sbjct: 650 DMEGSGFGG-DLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 708 Query: 266 GPPRTGG-PSPAGPAAAR-----------LAEDPAPHYPAGAPAPGPHPAAGEV----PP 309 GPP G P P GP L E AP + APGP A GE P Sbjct: 709 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP 768 Query: 310 GPGGPSVIHSPPPPPPPAVLA--------KPKLWSLAEIATSSDKVKDGGGGNEGSP-CP 360 GP GP PP PP P + A WS A A + G G +G P P Sbjct: 769 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSA-DGPQGPPGLPGLKGDPGVP 827 Query: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420 PG G P P R A P G SR PG G G Sbjct: 828 GLPGAKGEVGADGVPGFPG-LPGREGIAGPQGPKGDRGSR----GEKGDPGKDGVGQPG- 881 Query: 421 LHGHPGPGPGP 431 L G PGP PGP Sbjct: 882 LPGPPGP-PGP 891 Score = 48.9 bits (115), Expect = 1e-05 Identities = 80/332 (24%), Positives = 112/332 (33%), Gaps = 82/332 (24%) Query: 30 GPRTDELGRSSSGSAFSPYAGSTA-----------FTAPS-----PGYNSHLQYGADPAA 73 GP+ + + GS FSP G+ F P PGY + + P Sbjct: 937 GPKGE---KGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 993 Query: 74 AAAAAFSSYVGSPYDHTPG--MAGSLGYHPYAAPLGSYPYGDPAYRKNATRDATATLKAW 131 G P D + G M G G P P P G P Y N +++ Sbjct: 994 PGMNGLKGEKGEPGDASLGFGMRGMPG--PPGPPGPPGPPGTPVYDSNVFAESSRPGPPG 1051 Query: 132 LNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNRSEDEEEE 191 L ++ P P KG A+ + P + + E E Sbjct: 1052 LPGNQGPPGP-KG----------------------AKGEVGPPGPPGQFPFDFLQLEAEM 1088 Query: 192 ENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSD 251 + EK D + + ++G+P G G+ L GPP P G + Sbjct: 1089 KG---EKGDRGDAGQKGERGEPGGGGFFGSS---------LPGPPGPPGPRGYPGI---- 1132 Query: 252 FKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA----PGPHPAAGEV 307 P +G ++++G P G P P GP P P G P PGPH V Sbjct: 1133 ---PGPKG--ESIRGQP--GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISV 1185 Query: 308 PPGPGGPSVIHSPPPPPPPAVLAKP---KLWS 336 PGP GP P PP PP + +LW+ Sbjct: 1186 -PGPPGP-----PGPPGPPGTMGASSGVRLWA 1211 Score = 47.0 bits (110), Expect = 4e-05 Identities = 70/243 (28%), Positives = 78/243 (32%), Gaps = 63/243 (25%) Query: 237 TPAGKETEGSLSDSDFKE--PPSEGRLD-----ALQGPPRTGGP-SPAGPAAARLAEDPA 288 TP G+ EG L + P GR L GPP P SP GPA L P Sbjct: 508 TPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPG 567 Query: 289 PHYPAGAPAPGPHPAA-GEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKV 347 P P G P P GE PG P P P P ++ DK Sbjct: 568 PQGPPGPPGRDGTPGRDGE----PGDPGEDGKPGDTGPQGFPGTP-----GDVGPKGDKG 618 Query: 348 KDGGG-----GNEGSPCPPCPG---------PIAG-------QALGGSRASPA-PAPSRS 385 G G G +G P PP P + G +AL G R P P P Sbjct: 619 DPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGV 678 Query: 386 P------------SAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTT 433 P S+ P P G P PG F L G PGP PG Sbjct: 679 PGLPGEPGRFGVNSSDVPGPAG----------LPGVPGREGPPGFPGLPGPPGP-PGREG 727 Query: 434 GPG 436 PG Sbjct: 728 PPG 730 Score = 41.6 bits (96), Expect = 0.002 Identities = 68/239 (28%), Positives = 78/239 (32%), Gaps = 34/239 (14%) Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSD-SDFKEPPSEGRLD 262 PQ P KGD G K G L GPP P G S D S P EGR Sbjct: 856 PQGP--KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR-- 911 Query: 263 ALQGPPRTGGPSPAGPAAARLAE----DPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIH 318 P G P PAGP ++ P P G P P G + GP Sbjct: 912 ----PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGAL--GPAQKGAKG 965 Query: 319 SPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALG-GSRAS 377 P PP +P EI + G G +G P +LG G R Sbjct: 966 EPGFRGPPGPYGRPGY--KGEIGFPGRPGRPGMNGLKGEKGEP-----GDASLGFGMRGM 1018 Query: 378 PAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436 P P P P P GT + + PG L G+ GP PGP G Sbjct: 1019 PGPPGPPGP----PGPPGTPVYDSNVFAESSRPGPPG------LPGNQGP-PGPKGAKG 1066 >gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo sapiens] Length = 309 Score = 65.5 bits (158), Expect = 1e-10 Identities = 60/212 (28%), Positives = 73/212 (34%), Gaps = 19/212 (8%) Query: 207 PEDKGDPEG--PEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKE-PPSEGRLDA 263 P G PEG P+ G Q + +GPP G +++G E PP +G + Sbjct: 93 PPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQS 152 Query: 264 LQGPPRTGGPSPAGPAAARLAEDPAPH--YPAGAP--------APGPHPAAGEVPPGPGG 313 PPR G P P ++ P PH P G P P P P E PP GG Sbjct: 153 QGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGG 212 Query: 314 PSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGG----GGNEGSPCPPCPGPIAGQ 369 PPP P P K G GN+ PP P Sbjct: 213 NQ--SQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPP 270 Query: 370 ALGGSRASPAPAPSRSPSAQCPFPGGTVLSRP 401 GG+ P P P+ P P P G RP Sbjct: 271 PPGGNPQQPLPPPAGKPQGPPPPPQGGRPHRP 302 Score = 62.8 bits (151), Expect = 7e-10 Identities = 75/266 (28%), Positives = 92/266 (34%), Gaps = 51/266 (19%) Query: 185 SEDEEEEENIDLEKNDEDEPQKPEDKGDPEG--PEAGGAEQKAASGCERLQGPPTPAGKE 242 +ED +EE+ + + E ++P+ P+ P G E + G + QGPP GK Sbjct: 20 NEDVSQEESPSVISG-KPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKP 78 Query: 243 TEGSLSDSDFKEPPSEGRLDALQGP-PRTGGPSPAGPAAARLAEDPAPH--YPAGAP--- 296 EG PP +G + QGP PR G P P ++ P P P G P Sbjct: 79 -EG---------PPPQGGNQS-QGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQG 127 Query: 297 -----APGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGG 351 P P P E PP GG S PPP P P Sbjct: 128 GNQSQGPPPRPGKPEGPPPQGGN---QSQGPPPRPGKPEGP----------------PPQ 168 Query: 352 GGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPG 411 GGN+ PP PG G G S P P P GG P P PG Sbjct: 169 GGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP-----PPRPG 223 Query: 412 YTN--YGSFGHLHGHPGPGPGPTTGP 435 G+ P P PG GP Sbjct: 224 KPEGPPSQGGNKPQGPPPHPGKPQGP 249 Score = 41.2 bits (95), Expect = 0.002 Identities = 41/122 (33%), Positives = 46/122 (37%), Gaps = 34/122 (27%) Query: 207 PEDKGDPEGP--EAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDAL 264 P G PEGP + G Q + QGPP G + + PP GR Sbjct: 219 PPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQ---------RPPPPGR---P 266 Query: 265 QGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPP 324 QGPP GG + P P PAG P GP P PP G P H PP Sbjct: 267 QGPPPPGGN----------PQQPLPP-PAGKP-QGPPP-----PPQGGRP---HRPPQGQ 306 Query: 325 PP 326 PP Sbjct: 307 PP 308 Score = 30.0 bits (66), Expect = 4.9 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 202 DEPQKPEDKGDPEG--PEAGGAEQKAASGCERLQGPPTP 238 ++PQ+P G P+G P G +Q + QGPP P Sbjct: 255 NKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPP 293 >gi|55750053 atrophin-1 [Homo sapiens] Length = 1190 Score = 64.7 bits (156), Expect = 2e-10 Identities = 75/292 (25%), Positives = 96/292 (32%), Gaps = 49/292 (16%) Query: 185 SEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETE 244 SE E EE N + E E +P+ D + + +S + + T Sbjct: 77 SESESEETNAPKKTKTEQELPRPQSPSDLDSLDGRSLNDDGSSDPRDIDQD----NRSTS 132 Query: 245 GSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGA--PAPGPHP 302 S+ E S+ QGP R P P P + + D P P + P P P Sbjct: 133 PSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFPPSPQ-PPDSTPRQPEASFEPHPSVTP 191 Query: 303 AAGEVPPGPGGPSVIHSPPPPPPP----------AVLAKPKLWSLAEIATSSDKVKDGGG 352 P P + +PP PPP VL+ P + A SS GG Sbjct: 192 TGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSGPPMGPKGGGAASSV-----GG 246 Query: 353 GNEGSPCPPCPGPIAGQALGGSRASP---------------APAPSRSPSAQCPFPGGTV 397 N G PP PI+ + G S A P AP P+ P P Sbjct: 247 PNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPA 306 Query: 398 LSRPLYYTAPFYPGYTNYGSFGHLHG-----------HPGPGPGPTTGPGSH 438 L RPL + PG GHL PGP GPT P H Sbjct: 307 L-RPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPH 357 Score = 58.9 bits (141), Expect = 1e-08 Identities = 76/258 (29%), Positives = 93/258 (36%), Gaps = 48/258 (18%) Query: 211 GDPEGPEAGGAEQKAASGCERLQGPP--TPAGKETEGSLSDSDFKEPPSE---GRLDALQ 265 G P GP+ GGA Q PP TP + G+ K P + G L + Sbjct: 230 GPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAP 289 Query: 266 GP---PRTGGPSPAGPAAARLAEDPAPHYPAGA-PAPG--PHPAA-----GEVPPGP-GG 313 P P P PA L A GA P PG P P A G +PPGP G Sbjct: 290 PPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKG 349 Query: 314 PSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGG 373 P++ SP PP + A ++SS + S Sbjct: 350 PTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSS---------------- 393 Query: 374 SRASPAPAPSRSPSAQCPFPGGTVLS---RPLYYTAPFYPGYTNYGS-------FGHL-- 421 S ASP PA PS FP T LS +P YT P P + +G L Sbjct: 394 SSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLA 453 Query: 422 --HGHPGPGPGPTTGPGS 437 + HPGP P P+TG S Sbjct: 454 NSNAHPGPFP-PSTGAQS 470 Score = 38.9 bits (89), Expect = 0.011 Identities = 42/155 (27%), Positives = 54/155 (34%), Gaps = 34/155 (21%) Query: 235 PPTPAGKETEGSLSD--SDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPA---- 288 PP P + +LS + P+ + + GPP G +P+ P A + A P Sbjct: 602 PPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPS-PGAYKTATPPGYKPG 660 Query: 289 ----------PHYPAGAPAPGP------HPAAGEVPPGPGGPSVIHSPPPPP------PP 326 P Y +P GP P G P P GPS + S PPPP PP Sbjct: 661 SPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASGPP 720 Query: 327 AVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP 361 + K E T V SP PP Sbjct: 721 LSATQIKQEPAEEYETPESPVPPA-----RSPSPP 750 Score = 34.3 bits (77), Expect = 0.26 Identities = 50/228 (21%), Positives = 72/228 (31%), Gaps = 23/228 (10%) Query: 218 AGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAG 277 + A ++S P PA + +L PP + Q P T P+ Sbjct: 380 SSSAAASSSSSSSSSSASPFPASQ----ALPSYPHSFPPPTSLSVSNQPPKYT---QPSL 432 Query: 278 PAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSL 337 P+ A ++ P P P G + G PP G S H PP Sbjct: 433 PSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAH------PPVSTHHHHHQQQ 486 Query: 338 AEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAP-APSRSPSAQCPFPGGT 396 + + + + G+ PP PG GGS P A S S + P+P G Sbjct: 487 QQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGP 546 Query: 397 VLSRPLYY---------TAPFYPGYTNYGSFGHLHGHPGPGPGPTTGP 435 P + P +N S +P P P+ GP Sbjct: 547 AHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGP 594 Score = 31.2 bits (69), Expect = 2.2 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 13/75 (17%) Query: 266 GPPRTG-GP-SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGP-SVIHSPPP 322 G P G GP PAGP+ P+ P APA GP +A ++ P SP P Sbjct: 688 GSPTVGPGPLPPAGPSGL-----PSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVP 742 Query: 323 P-----PPPAVLAKP 332 P PPP V+ P Sbjct: 743 PARSPSPPPKVVDVP 757 >gi|55750041 atrophin-1 [Homo sapiens] Length = 1190 Score = 64.7 bits (156), Expect = 2e-10 Identities = 75/292 (25%), Positives = 96/292 (32%), Gaps = 49/292 (16%) Query: 185 SEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETE 244 SE E EE N + E E +P+ D + + +S + + T Sbjct: 77 SESESEETNAPKKTKTEQELPRPQSPSDLDSLDGRSLNDDGSSDPRDIDQD----NRSTS 132 Query: 245 GSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGA--PAPGPHP 302 S+ E S+ QGP R P P P + + D P P + P P P Sbjct: 133 PSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFPPSPQ-PPDSTPRQPEASFEPHPSVTP 191 Query: 303 AAGEVPPGPGGPSVIHSPPPPPPP----------AVLAKPKLWSLAEIATSSDKVKDGGG 352 P P + +PP PPP VL+ P + A SS GG Sbjct: 192 TGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSGPPMGPKGGGAASSV-----GG 246 Query: 353 GNEGSPCPPCPGPIAGQALGGSRASP---------------APAPSRSPSAQCPFPGGTV 397 N G PP PI+ + G S A P AP P+ P P Sbjct: 247 PNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPA 306 Query: 398 LSRPLYYTAPFYPGYTNYGSFGHLHG-----------HPGPGPGPTTGPGSH 438 L RPL + PG GHL PGP GPT P H Sbjct: 307 L-RPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPH 357 Score = 58.9 bits (141), Expect = 1e-08 Identities = 76/258 (29%), Positives = 93/258 (36%), Gaps = 48/258 (18%) Query: 211 GDPEGPEAGGAEQKAASGCERLQGPP--TPAGKETEGSLSDSDFKEPPSE---GRLDALQ 265 G P GP+ GGA Q PP TP + G+ K P + G L + Sbjct: 230 GPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAP 289 Query: 266 GP---PRTGGPSPAGPAAARLAEDPAPHYPAGA-PAPG--PHPAA-----GEVPPGP-GG 313 P P P PA L A GA P PG P P A G +PPGP G Sbjct: 290 PPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKG 349 Query: 314 PSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGG 373 P++ SP PP + A ++SS + S Sbjct: 350 PTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSS---------------- 393 Query: 374 SRASPAPAPSRSPSAQCPFPGGTVLS---RPLYYTAPFYPGYTNYGS-------FGHL-- 421 S ASP PA PS FP T LS +P YT P P + +G L Sbjct: 394 SSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLA 453 Query: 422 --HGHPGPGPGPTTGPGS 437 + HPGP P P+TG S Sbjct: 454 NSNAHPGPFP-PSTGAQS 470 Score = 38.9 bits (89), Expect = 0.011 Identities = 42/155 (27%), Positives = 54/155 (34%), Gaps = 34/155 (21%) Query: 235 PPTPAGKETEGSLSD--SDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPA---- 288 PP P + +LS + P+ + + GPP G +P+ P A + A P Sbjct: 602 PPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPS-PGAYKTATPPGYKPG 660 Query: 289 ----------PHYPAGAPAPGP------HPAAGEVPPGPGGPSVIHSPPPPP------PP 326 P Y +P GP P G P P GPS + S PPPP PP Sbjct: 661 SPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASGPP 720 Query: 327 AVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP 361 + K E T V SP PP Sbjct: 721 LSATQIKQEPAEEYETPESPVPPA-----RSPSPP 750 Score = 34.3 bits (77), Expect = 0.26 Identities = 50/228 (21%), Positives = 72/228 (31%), Gaps = 23/228 (10%) Query: 218 AGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAG 277 + A ++S P PA + +L PP + Q P T P+ Sbjct: 380 SSSAAASSSSSSSSSSASPFPASQ----ALPSYPHSFPPPTSLSVSNQPPKYT---QPSL 432 Query: 278 PAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSL 337 P+ A ++ P P P G + G PP G S H PP Sbjct: 433 PSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAH------PPVSTHHHHHQQQ 486 Query: 338 AEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAP-APSRSPSAQCPFPGGT 396 + + + + G+ PP PG GGS P A S S + P+P G Sbjct: 487 QQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGP 546 Query: 397 VLSRPLYY---------TAPFYPGYTNYGSFGHLHGHPGPGPGPTTGP 435 P + P +N S +P P P+ GP Sbjct: 547 AHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGP 594 Score = 31.2 bits (69), Expect = 2.2 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 13/75 (17%) Query: 266 GPPRTG-GP-SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGP-SVIHSPPP 322 G P G GP PAGP+ P+ P APA GP +A ++ P SP P Sbjct: 688 GSPTVGPGPLPPAGPSGL-----PSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVP 742 Query: 323 P-----PPPAVLAKP 332 P PPP V+ P Sbjct: 743 PARSPSPPPKVVDVP 757 >gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] Length = 1464 Score = 63.9 bits (154), Expect = 3e-10 Identities = 68/242 (28%), Positives = 84/242 (34%), Gaps = 58/242 (23%) Query: 204 PQKPEDKGDPEGPEAGGAEQ-----------KAASGCERLQGPPTPAGKE----TEGSLS 248 P P+ G P GP+ E K G +QGPP PAG+E G Sbjct: 417 PSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPG 476 Query: 249 DSDFKEPPSEGRLDALQGPPRTGGPS-PAGPAAARLAEDPAPHYPAGAP----------- 296 + PP E +G P G + P GPA R P P P G+P Sbjct: 477 PTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGER--GSPGPAGPKGSPGEAGRPGEAGL 534 Query: 297 -----------APGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSD 345 +PGP G PPGP G P PP PP A+ + + Sbjct: 535 PGAKGLTGSPGSPGPDGKTG--PPGPAGQD--GRPGPPGPPG--ARGQAGVMGFPGPKGA 588 Query: 346 KVKDGGGGNEGSPCPP-CPGPIAGQALGGSRASPAPA----------PSRSPSAQ-CPFP 393 + G G G P PP GP G++ P PA P+ SP Q P P Sbjct: 589 AGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGP 648 Query: 394 GG 395 G Sbjct: 649 AG 650 Score = 62.4 bits (150), Expect = 9e-10 Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 55/280 (19%) Query: 198 KNDED----EPQKPEDKGDPEGPEA-----------GGAEQKAASGCERLQGPPTPAGKE 242 KN +D +P +P ++G P GP+ G + SG + +G PAG + Sbjct: 228 KNGDDGEAGKPGRPGERGPP-GPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPK 286 Query: 243 TE-GSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAAR-------LAEDPAPHYPAG 294 E GS ++ + G++ P G P GPA AR A P P PAG Sbjct: 287 GEPGSPGENG-----APGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAG 341 Query: 295 APA-PGPHPAAGEVPP----GPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKD 349 P PG A GE P G GP + P PP PA A P A+ K + Sbjct: 342 PPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGAD-GQPGAKGAN 400 Query: 350 GGGGNEGSP-CPPCPGPIAGQALG------GSRASPAPAPSRSPSAQCPFPGGTVLSRPL 402 G G G+P P GP Q G G+ P S+ + PG + P Sbjct: 401 GAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGP- 459 Query: 403 YYTAPFYPGYTNYGSFGHLHGHPGP-----GPGPTTGPGS 437 PG G PGP PG GPGS Sbjct: 460 -------PGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS 492 Score = 61.6 bits (148), Expect = 2e-09 Identities = 84/277 (30%), Positives = 96/277 (34%), Gaps = 68/277 (24%) Query: 207 PEDKGD--PEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDAL 264 P DKG+ P GP AG + A G GPP PAG F PP Sbjct: 778 PGDKGESGPSGP-AGPTGARGAPGDRGEPGPPGPAG-----------FAGPPGADGQPGA 825 Query: 265 QGPPRTGG-------PSPAGPAAARLAEDPAPHYPAGAP-APGPHPAAGEVPPG------ 310 +G P G P PAGPA P P GAP A G +AG PPG Sbjct: 826 KGEPGDAGAKGDAGPPGPAGPAGP-----PGPIGNVGAPGAKGARGSAG--PPGATGFPG 878 Query: 311 ------PGGPSVIHSPPPPPPPA-------------VLAKP-KLWSLAEIATSSDKVKDG 350 P GPS PP PP PA +P ++ + +K G Sbjct: 879 AAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPG 938 Query: 351 GGGNEGSPCPPCPGPIAGQ-------ALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPL 402 G G+P P P IAGQ G R P P PS P Q P G + P Sbjct: 939 ADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGP-SGASGERGPP 997 Query: 403 YYTAPFYPGYTNYGSFGHLHGHPGP--GPGPTTGPGS 437 P PG G PG PG PG+ Sbjct: 998 GPMGP--PGLAGPPGESGREGAPGAEGSPGRDGSPGA 1032 Score = 53.5 bits (127), Expect = 4e-07 Identities = 82/284 (28%), Positives = 96/284 (33%), Gaps = 67/284 (23%) Query: 197 EKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE-------TEGSLSD 249 E E P D G P GP +G ++ G +QGPP PAG +G+ D Sbjct: 654 EAGKPGEQGVPGDLGAP-GP-SGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGD 711 Query: 250 SDFKEPPSEGRLDALQGPP----RTGGPSP------AGPAAA----------RLAEDPAP 289 + P LQG P G P P AGP A L P Sbjct: 712 AGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGP 771 Query: 290 HYPAGAPA----PGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSD 345 PAGAP GP AG P G G P PP PA A P Sbjct: 772 PGPAGAPGDKGESGPSGPAG--PTGARGAPGDRGEPGPPGPAGFAGPP----GADGQPGA 825 Query: 346 KVKDGGGGNEGSPCPP-------CPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVL 398 K + G G +G PP PGPI G++ + S P FPG Sbjct: 826 KGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARG---SAGPPGATGFPGAAGR 882 Query: 399 SRPLYYTAPFYPGYTNYGSFGHLHGHPGP-------GPGPTTGP 435 P PG + G+ G G PGP GP TGP Sbjct: 883 VGP--------PGPS--GNAGP-PGPPGPAGKEGGKGPRGETGP 915 Score = 53.1 bits (126), Expect = 5e-07 Identities = 74/251 (29%), Positives = 86/251 (34%), Gaps = 41/251 (16%) Query: 223 QKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPP----RTGGPSPAG- 277 Q+ G L GP GK+ G S + PP L GPP R G P G Sbjct: 966 QRGERGFPGLPGPSGEPGKQ--GPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGS 1023 Query: 278 ------PAAARLAEDPAPHYPAGAP----APGPHPAAGEV----------PPGPGGPSVI 317 P A + P P GAP APGP AG+ P GP GP Sbjct: 1024 PGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGA 1083 Query: 318 HSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRAS 377 P P P E D+ G G G PP P G+ G + Sbjct: 1084 RGPAGPQGPR-------GDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQ--GPSGA 1134 Query: 378 PAPAPSRSPSAQCPFPGGTVLS-RPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436 PA R P PG L+ P P G T G G + G PGP PGP PG Sbjct: 1135 SGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRT--GDAGPV-GPPGP-PGPPGPPG 1190 Query: 437 SHFNGLNQTVL 447 G + + L Sbjct: 1191 PPSAGFDFSFL 1201 Score = 52.4 bits (124), Expect = 9e-07 Identities = 73/266 (27%), Positives = 87/266 (32%), Gaps = 56/266 (21%) Query: 218 AGGAEQKAASGCERLQGPPTPAGKET-EGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPA 276 AG SG GPP PAGKE +G ++ P E GPP G P PA Sbjct: 880 AGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGE------VGPP--GPPGPA 931 Query: 277 GPAAARLAEDPA--PHYPA-----------------------GAPAP-------GPHPAA 304 G + A+ PA P P G P P GP A+ Sbjct: 932 GEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGAS 991 Query: 305 GEV-PPGPGGPSVIHSPPPPP--PPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSP-CP 360 GE PPGP GP + PP A A+ D+ + G G G+P P Sbjct: 992 GERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAP 1051 Query: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYP----GYTNYG 416 PGP+ G R PA P G P G + Sbjct: 1052 GAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHR 1111 Query: 417 SFGHLHGHPGP-------GPGPTTGP 435 F L G PGP GP +GP Sbjct: 1112 GFSGLQGPPGPPGSPGEQGPSGASGP 1137 Score = 48.5 bits (114), Expect = 1e-05 Identities = 78/273 (28%), Positives = 91/273 (33%), Gaps = 66/273 (24%) Query: 214 EGPEAGGAEQKAASGCERLQGPPTPAGKETE----GSLSDSDFKEPPSEGRLDALQGPP- 268 +GP G + ASG +GPP P GK + G + PP L G Sbjct: 202 QGPP-GEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAG 260 Query: 269 ---------------RTGGPSPAGPAA--ARLAEDPAPHY--PAGAP-------APGPHP 302 G PAGP E+ AP P G P APGP Sbjct: 261 LPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAG 320 Query: 303 AAGE-------VPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNE 355 A G PPGP GP + PP P AV AK E + +G G Sbjct: 321 ARGNDGATGAAGPPGPTGP----AGPPGFPGAVGAK------GEAGPQGPRGSEGPQGVR 370 Query: 356 GSPCPPCPGPIAGQA--------LGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAP 407 G P PP P AG A G A+ AP + +P FPG S P P Sbjct: 371 GEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPG----FPGARGPSGPQGPGGP 426 Query: 408 FYPGYTN-----YGSFGHLHGHPGPGPGPTTGP 435 P + GS G PGP GP Sbjct: 427 PGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGP 459 Score = 47.0 bits (110), Expect = 4e-05 Identities = 43/126 (34%), Positives = 47/126 (37%), Gaps = 27/126 (21%) Query: 204 PQKPE-DKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLD 262 PQ P DKG E E G K G LQGPP P G E Sbjct: 1089 PQGPRGDKG--ETGEQGDRGIKGHRGFSGLQGPPGPPGSPGE------------------ 1128 Query: 263 ALQGPPRTGGPS-PAGP--AAARLAEDPAPHYPAGAPAPGPHPAAGEVPP-GPGGPSVIH 318 QGP GP+ P GP +A +D P PGP G+ P GP GP Sbjct: 1129 --QGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPP 1186 Query: 319 SPPPPP 324 PP PP Sbjct: 1187 GPPGPP 1192 Score = 44.7 bits (104), Expect = 2e-04 Identities = 67/237 (28%), Positives = 80/237 (33%), Gaps = 48/237 (20%) Query: 229 CERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPA 288 C+ + P E E D E P++ ++GP GP Sbjct: 75 CDETKNCPGAEVPEGECCPVCPDGSESPTDQETTGVEGPKGDTGPR-------------G 121 Query: 289 PHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAV---LAKPKLWSLAEIATSSD 345 P PAG P P +P GP GP P PP PP + A + E +T Sbjct: 122 PRGPAGPPGRDGIPGQPGLP-GPPGP-----PGPPGPPGLGGNFAPQLSYGYDEKSTGGI 175 Query: 346 KVKD--GGGGNEGSPCPP-CPGPIAGQ----------ALG--GSRASPAPAPSRSPSAQC 390 V G G G P PP PGP Q A G G R P P + Sbjct: 176 SVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEA 235 Query: 391 PFPG--------GTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPG-PGP-GPTTGPGS 437 PG G +R L TA PG + F L G G GP GP PGS Sbjct: 236 GKPGRPGERGPPGPQGARGLPGTAGL-PGMKGHRGFSGLDGAKGDAGPAGPKGEPGS 291 Score = 40.0 bits (92), Expect = 0.005 Identities = 47/171 (27%), Positives = 53/171 (30%), Gaps = 57/171 (33%) Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE------------------------ 242 P KGD E G A A G GP PAGK Sbjct: 1030 PGAKGDRG--ETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPA 1087 Query: 243 -------TEGSLSDSDFKEPPSEGRLDALQGPP-RTGGPSPAGPAAARLAEDP-APHYPA 293 +G + + LQGPP G P GP+ A P P A Sbjct: 1088 GPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSA 1147 Query: 294 GAPA-------------PGPHPAAGEV----PPGPGGPSVIHSPPPPPPPA 327 GAP PGP G+ PPGP GP P PP PP+ Sbjct: 1148 GAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGP-----PGPPGPPS 1193 >gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 preproprotein [Homo sapiens] Length = 198 Score = 63.5 bits (153), Expect = 4e-10 Identities = 67/220 (30%), Positives = 82/220 (37%), Gaps = 54/220 (24%) Query: 182 RNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEA--GGAEQKAASGCERLQGPPTPA 239 +N +ED +EE+ L + P P+ P+GP G + G + QGPP P Sbjct: 17 QNLNEDVSQEESPSLIAGNPQGPS-PQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 75 Query: 240 ---GKETEGSLSDSDFKEP------PSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPH 290 G +G S S P P +G QGPP GG P GP P P Sbjct: 76 KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKP--QGPPPQGGNKPQGP--------PPPG 125 Query: 291 YPAGAPAPGPHPA-AGEVPPG-PGGP--SVIHSPPPPPPPAVLAKPKLWSLAEIATSSDK 346 P G PA G + + PPG P GP ++P PPPPA Sbjct: 126 KPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPA------------------- 166 Query: 347 VKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSP 386 GGN P P AGQ G R PSR P Sbjct: 167 -----GGNPQQP----QAPPAGQPQGPPRPPQGGRPSRPP 197 Score = 33.9 bits (76), Expect = 0.34 Identities = 33/117 (28%), Positives = 40/117 (34%), Gaps = 19/117 (16%) Query: 283 LAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPP-----PPPAVLAKPKLWSL 337 ++++ +P AG P GP P G P GP PPPP PPP KP+ Sbjct: 23 VSQEESPSLIAGNPQ-GPSPQGGNKPQGP--------PPPPGKPQGPPPQGGNKPQ---- 69 Query: 338 AEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPG 394 + G SP P P GG P P P P PG Sbjct: 70 GPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPP-PG 125 >gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo sapiens] Length = 1487 Score = 62.8 bits (151), Expect = 7e-10 Identities = 82/270 (30%), Positives = 94/270 (34%), Gaps = 35/270 (12%) Query: 198 KNDEDEPQKPEDKGDPEGPEAGGAEQK-AASGCERLQGPPTPAGKETE-GSLSDSDFKE- 254 K EP K +KG P P G K +G GP PAG+ E G+ S F+ Sbjct: 608 KGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGL 667 Query: 255 -----PPSEGRLDALQGPP-RTGGPSPAGPAAAR--LAEDPAP-----HYPAGAPAP--- 298 PP EG QG P G P GP R E +P P G P Sbjct: 668 PGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGT 727 Query: 299 -GPHPAAGEV-PPGPGGPSVIHSPPPPPPPAVLAKPK--LWSLAEIATSSDKVKDGGGGN 354 GP A+G PPG GP + P A +A PK + E KDGG G Sbjct: 728 DGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGL 787 Query: 355 EGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYT- 413 G P PGP G P PA S G T P + P PG Sbjct: 788 TGPIGP--PGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP--PGADG 843 Query: 414 ------NYGSFGHLHGHPGPGP-GPTTGPG 436 G G PGP GP+ PG Sbjct: 844 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 873 Score = 62.4 bits (150), Expect = 9e-10 Identities = 79/251 (31%), Positives = 92/251 (36%), Gaps = 34/251 (13%) Query: 209 DKGD--PEGPEAGGAEQKAASGCERLQGPPTPAG-KETEGSLSDSDFKEPPSEGRLDALQ 265 +KG+ P GP AG A + A G GPP PAG G+ K E Sbjct: 802 EKGEVGPPGP-AGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 860 Query: 266 GPPRTGGPSPA----------GPAAARLAEDP--APHYPAGAPAPGPHPAAGEV-PPGPG 312 G P GPS A GP AR A+ P A +P A GP + G PPGP Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 920 Query: 313 GPSVIHSPP----PPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAG 368 GPS P PP +P L A +K + G G G+ PP P +AG Sbjct: 921 GPSGKDGPKGARGDSGPPGRAGEPGLQGPA--GPPGEKGEPGDDGPSGAEGPPGPQGLAG 978 Query: 369 Q-------ALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420 Q G R P P PS P Q PG + P P PG T Sbjct: 979 QRGIVGLPGQRGERGFPGLPGPSGEPGKQ-GAPGASGDRGPPGPVGP--PGLTGPAGEPG 1035 Query: 421 LHGHPGPGPGP 431 G PG P Sbjct: 1036 REGSPGADGPP 1046 Score = 48.1 bits (113), Expect = 2e-05 Identities = 42/137 (30%), Positives = 51/137 (37%), Gaps = 16/137 (11%) Query: 206 KPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETE-GSLSDSDFKEPPSEGRLDAL 264 K D+G E G +G +QGP P G + E G + K L L Sbjct: 1084 KQGDRG--EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGL 1141 Query: 265 QGPPRTGGPS----PAGPAAAR--------LAEDPAPHYPAGAPAPGPHPAAGEV-PPGP 311 GPP G PAGP+ R +D A P PGP +GE P GP Sbjct: 1142 PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGP 1201 Query: 312 GGPSVIHSPPPPPPPAV 328 G PP PP P + Sbjct: 1202 PGNPGPPGPPGPPGPGI 1218 Score = 45.1 bits (105), Expect = 1e-04 Identities = 61/213 (28%), Positives = 71/213 (33%), Gaps = 53/213 (24%) Query: 209 DKGD--PEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQG 266 D+GD +GPE G + G GPP PAG E Sbjct: 766 DRGDVGEKGPE-GAPGKDGGRGLTGPIGPPGPAGANGEKG-------------------- 804 Query: 267 PPRTGGPSPAGPAAARLAE-------DPAPHYPAGAPA----PGPHPAAGEV-------P 308 G P PAG A AR A P P AG P PG GE Sbjct: 805 --EVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGA 862 Query: 309 PGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGG-----GNEGSPCPP-C 362 PGP GPS P P P + PK A+ + G G+ G+P PP Sbjct: 863 PGPQGPS---GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP 919 Query: 363 PGPIAGQALGGSRASPAPAPSRSPSAQCPFPGG 395 PGP G+R P P R+ P G Sbjct: 920 PGPSGKDGPKGARGDSGP-PGRAGEPGLQGPAG 951 Score = 43.9 bits (102), Expect = 3e-04 Identities = 66/252 (26%), Positives = 79/252 (31%), Gaps = 48/252 (19%) Query: 209 DKGDPEGPEAGGAE-QKAASGCERLQGPPTPAGKETEG----SLSDSDFKEPPSEGRLDA 263 DKG+ P G + + G GPP P G G + F E +L Sbjct: 139 DKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGV 198 Query: 264 LQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPP 323 +QGP G P GP PAG APGP G P PG P V P Sbjct: 199 MQGP--MGPMGPRGPPG-----------PAG--APGPQGFQGN-PGEPGEPGVSGPMGPR 242 Query: 324 PPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSP----------CPPCPGPIAGQALGG 373 PP KP + K G G G P P PG + G Sbjct: 243 GPPGPPGKP--------GDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPG 294 Query: 374 SRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTA-PFYPGYTNYGSFGHLHGHPG-PGP-- 429 + A + + PG P+ P G T G+ G PGP Sbjct: 295 LDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAG 354 Query: 430 -----GPTTGPG 436 GP GPG Sbjct: 355 PPGPVGPAGGPG 366 Score = 41.6 bits (96), Expect = 0.002 Identities = 65/239 (27%), Positives = 78/239 (32%), Gaps = 39/239 (16%) Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE-TEGSLSDSDFKEPPSEGRLDALQ 265 P P GP AGG A G + GP G E +G + P S G A Sbjct: 352 PAGPPGPVGP-AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPG--TPGSPGPAGASG 408 Query: 266 GPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPP 325 P G P G A A AP +P PGP A G P GP G + Sbjct: 409 NPGTDGIPGAKGSAGAPGIAG-APGFPGPRGPPGPQGATG--PLGPKGQT---------- 455 Query: 326 PAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP-CPGPIAGQALGGSRASP------ 378 E + K + G G G P PGP + G+R P Sbjct: 456 ------------GEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 503 Query: 379 APAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPGS 437 P R FPG L+ P AP G + +G PG PG PG+ Sbjct: 504 GPPGERGAPGNRGFPGQDGLAGP--KGAPGERGPSGLAGPKGANGDPG-RPGEPGLPGA 559 Score = 39.7 bits (91), Expect = 0.006 Identities = 48/182 (26%), Positives = 57/182 (31%), Gaps = 28/182 (15%) Query: 217 EAGGAEQKAASGCERLQGPPTPAGKETE-GSLSDSDFKEPPSEGRLDALQGP--PRTGGP 273 E G A G GP P GK+ + G P +QGP PR Sbjct: 1060 ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKG 1119 Query: 274 SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPK 333 P L G P P P P+ + GP GPS PP P P+ Sbjct: 1120 EAGEPGERGLKGHRGFTGLQGLPGP-PGPSGDQGASGPAGPSGPRGPPGPVGPS------ 1172 Query: 334 LWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQ-ALGGSRASPAPAPSRSPSAQCPF 392 KDG G G PP P +G+ G +P P P P Sbjct: 1173 -------------GKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP----PG 1215 Query: 393 PG 394 PG Sbjct: 1216 PG 1217 Score = 38.9 bits (89), Expect = 0.011 Identities = 58/226 (25%), Positives = 72/226 (31%), Gaps = 67/226 (29%) Query: 210 KGDP--EGPEAGGAEQKAASGCERLQGPP-TPAGKETEGSLSDSDFKEPPSEGRLDALQG 266 KG P GP +G A K A+G G P P + G D+ +G++ Sbjct: 527 KGAPGERGP-SGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAG-----PQGKVGPSGA 580 Query: 267 PPRTGGPSPAGPAAAR----LAEDPAPHYPAGAP----------APGPHPAAGEV----- 307 P G P P GP AR + P P G P APG G+ Sbjct: 581 PGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA 640 Query: 308 --PPGPGGPSVIHS-------------PPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGG 352 PPGP GP+ P PP PP KP Sbjct: 641 AGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKP-------------------- 680 Query: 353 GNEGSP----CPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPG 394 G++G P P GP + G R SP + P PG Sbjct: 681 GDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPG 726 Score = 37.7 bits (86), Expect = 0.023 Identities = 61/251 (24%), Positives = 76/251 (30%), Gaps = 39/251 (15%) Query: 204 PQKPEDKGDPEGPEAGGAEQK-AASGCERLQGPPTPAGKETEGSLSDSDFKE-------P 255 P + ++G P P G K A G +GPP P G + +E P Sbjct: 986 PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 1045 Query: 256 PSE----------GRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAG 305 P G A+ P G P GPA P G A Sbjct: 1046 PGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG-----------PTGKQGDRGE-AGA 1093 Query: 306 EVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGP 365 + P GP GP+ P P + E K G G +G P P PGP Sbjct: 1094 QGPMGPSGPAGARGIQGPQGP----RGDKGEAGEPGERGLKGHRGFTGLQGLPGP--PGP 1147 Query: 366 IAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHP 425 Q G P P G + P+ P G + G+P Sbjct: 1148 SGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGP--RGRSGETGPAGPPGNP 1205 Query: 426 GPGPGPTTGPG 436 GP PGP PG Sbjct: 1206 GP-PGPPGPPG 1215 Score = 33.9 bits (76), Expect = 0.34 Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 11/98 (11%) Query: 281 ARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEI 340 A + P P G P + PPGP GP+ P + E Sbjct: 94 ATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGP----------RGDRGDKGEK 143 Query: 341 ATSSDKVKDGGGGNEGSPCPP-CPGPIAGQALGGSRAS 377 + +DG G G+P PP PGP LGG+ A+ Sbjct: 144 GAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA 181 >gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo sapiens] Length = 1418 Score = 62.8 bits (151), Expect = 7e-10 Identities = 82/270 (30%), Positives = 94/270 (34%), Gaps = 35/270 (12%) Query: 198 KNDEDEPQKPEDKGDPEGPEAGGAEQK-AASGCERLQGPPTPAGKETE-GSLSDSDFKE- 254 K EP K +KG P P G K +G GP PAG+ E G+ S F+ Sbjct: 539 KGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGL 598 Query: 255 -----PPSEGRLDALQGPP-RTGGPSPAGPAAAR--LAEDPAP-----HYPAGAPAP--- 298 PP EG QG P G P GP R E +P P G P Sbjct: 599 PGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGT 658 Query: 299 -GPHPAAGEV-PPGPGGPSVIHSPPPPPPPAVLAKPK--LWSLAEIATSSDKVKDGGGGN 354 GP A+G PPG GP + P A +A PK + E KDGG G Sbjct: 659 DGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGL 718 Query: 355 EGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYT- 413 G P PGP G P PA S G T P + P PG Sbjct: 719 TGPIGP--PGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP--PGADG 774 Query: 414 ------NYGSFGHLHGHPGPGP-GPTTGPG 436 G G PGP GP+ PG Sbjct: 775 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 804 Score = 62.4 bits (150), Expect = 9e-10 Identities = 79/251 (31%), Positives = 92/251 (36%), Gaps = 34/251 (13%) Query: 209 DKGD--PEGPEAGGAEQKAASGCERLQGPPTPAG-KETEGSLSDSDFKEPPSEGRLDALQ 265 +KG+ P GP AG A + A G GPP PAG G+ K E Sbjct: 733 EKGEVGPPGP-AGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 791 Query: 266 GPPRTGGPSPA----------GPAAARLAEDP--APHYPAGAPAPGPHPAAGEV-PPGPG 312 G P GPS A GP AR A+ P A +P A GP + G PPGP Sbjct: 792 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 851 Query: 313 GPSVIHSPP----PPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAG 368 GPS P PP +P L A +K + G G G+ PP P +AG Sbjct: 852 GPSGKDGPKGARGDSGPPGRAGEPGLQGPA--GPPGEKGEPGDDGPSGAEGPPGPQGLAG 909 Query: 369 Q-------ALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420 Q G R P P PS P Q PG + P P PG T Sbjct: 910 QRGIVGLPGQRGERGFPGLPGPSGEPGKQ-GAPGASGDRGPPGPVGP--PGLTGPAGEPG 966 Query: 421 LHGHPGPGPGP 431 G PG P Sbjct: 967 REGSPGADGPP 977 Score = 48.1 bits (113), Expect = 2e-05 Identities = 42/137 (30%), Positives = 51/137 (37%), Gaps = 16/137 (11%) Query: 206 KPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETE-GSLSDSDFKEPPSEGRLDAL 264 K D+G E G +G +QGP P G + E G + K L L Sbjct: 1015 KQGDRG--EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGL 1072 Query: 265 QGPPRTGGPS----PAGPAAAR--------LAEDPAPHYPAGAPAPGPHPAAGEV-PPGP 311 GPP G PAGP+ R +D A P PGP +GE P GP Sbjct: 1073 PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGP 1132 Query: 312 GGPSVIHSPPPPPPPAV 328 G PP PP P + Sbjct: 1133 PGNPGPPGPPGPPGPGI 1149 Score = 45.1 bits (105), Expect = 1e-04 Identities = 61/213 (28%), Positives = 71/213 (33%), Gaps = 53/213 (24%) Query: 209 DKGD--PEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQG 266 D+GD +GPE G + G GPP PAG E Sbjct: 697 DRGDVGEKGPE-GAPGKDGGRGLTGPIGPPGPAGANGEKG-------------------- 735 Query: 267 PPRTGGPSPAGPAAARLAE-------DPAPHYPAGAPA----PGPHPAAGEV-------P 308 G P PAG A AR A P P AG P PG GE Sbjct: 736 --EVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGA 793 Query: 309 PGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGG-----GNEGSPCPP-C 362 PGP GPS P P P + PK A+ + G G+ G+P PP Sbjct: 794 PGPQGPS---GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP 850 Query: 363 PGPIAGQALGGSRASPAPAPSRSPSAQCPFPGG 395 PGP G+R P P R+ P G Sbjct: 851 PGPSGKDGPKGARGDSGP-PGRAGEPGLQGPAG 882 Score = 43.9 bits (102), Expect = 3e-04 Identities = 66/252 (26%), Positives = 79/252 (31%), Gaps = 48/252 (19%) Query: 209 DKGDPEGPEAGGAE-QKAASGCERLQGPPTPAGKETEG----SLSDSDFKEPPSEGRLDA 263 DKG+ P G + + G GPP P G G + F E +L Sbjct: 70 DKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGV 129 Query: 264 LQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPP 323 +QGP G P GP PAG APGP G P PG P V P Sbjct: 130 MQGP--MGPMGPRGPPG-----------PAG--APGPQGFQGN-PGEPGEPGVSGPMGPR 173 Query: 324 PPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSP----------CPPCPGPIAGQALGG 373 PP KP + K G G G P P PG + G Sbjct: 174 GPPGPPGKP--------GDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPG 225 Query: 374 SRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTA-PFYPGYTNYGSFGHLHGHPG-PGP-- 429 + A + + PG P+ P G T G+ G PGP Sbjct: 226 LDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAG 285 Query: 430 -----GPTTGPG 436 GP GPG Sbjct: 286 PPGPVGPAGGPG 297 Score = 41.6 bits (96), Expect = 0.002 Identities = 65/239 (27%), Positives = 78/239 (32%), Gaps = 39/239 (16%) Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE-TEGSLSDSDFKEPPSEGRLDALQ 265 P P GP AGG A G + GP G E +G + P S G A Sbjct: 283 PAGPPGPVGP-AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPG--TPGSPGPAGASG 339 Query: 266 GPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPP 325 P G P G A A AP +P PGP A G P GP G + Sbjct: 340 NPGTDGIPGAKGSAGAPGIAG-APGFPGPRGPPGPQGATG--PLGPKGQT---------- 386 Query: 326 PAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP-CPGPIAGQALGGSRASP------ 378 E + K + G G G P PGP + G+R P Sbjct: 387 ------------GEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 434 Query: 379 APAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPGS 437 P R FPG L+ P AP G + +G PG PG PG+ Sbjct: 435 GPPGERGAPGNRGFPGQDGLAGP--KGAPGERGPSGLAGPKGANGDPG-RPGEPGLPGA 490 Score = 39.7 bits (91), Expect = 0.006 Identities = 48/182 (26%), Positives = 57/182 (31%), Gaps = 28/182 (15%) Query: 217 EAGGAEQKAASGCERLQGPPTPAGKETE-GSLSDSDFKEPPSEGRLDALQGP--PRTGGP 273 E G A G GP P GK+ + G P +QGP PR Sbjct: 991 ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKG 1050 Query: 274 SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPK 333 P L G P P P P+ + GP GPS PP P P+ Sbjct: 1051 EAGEPGERGLKGHRGFTGLQGLPGP-PGPSGDQGASGPAGPSGPRGPPGPVGPS------ 1103 Query: 334 LWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQ-ALGGSRASPAPAPSRSPSAQCPF 392 KDG G G PP P +G+ G +P P P P Sbjct: 1104 -------------GKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP----PG 1146 Query: 393 PG 394 PG Sbjct: 1147 PG 1148 Score = 38.9 bits (89), Expect = 0.011 Identities = 58/226 (25%), Positives = 72/226 (31%), Gaps = 67/226 (29%) Query: 210 KGDP--EGPEAGGAEQKAASGCERLQGPP-TPAGKETEGSLSDSDFKEPPSEGRLDALQG 266 KG P GP +G A K A+G G P P + G D+ +G++ Sbjct: 458 KGAPGERGP-SGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAG-----PQGKVGPSGA 511 Query: 267 PPRTGGPSPAGPAAAR----LAEDPAPHYPAGAP----------APGPHPAAGEV----- 307 P G P P GP AR + P P G P APG G+ Sbjct: 512 PGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA 571 Query: 308 --PPGPGGPSVIHS-------------PPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGG 352 PPGP GP+ P PP PP KP Sbjct: 572 AGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKP-------------------- 611 Query: 353 GNEGSP----CPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPG 394 G++G P P GP + G R SP + P PG Sbjct: 612 GDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPG 657 Score = 37.7 bits (86), Expect = 0.023 Identities = 61/251 (24%), Positives = 76/251 (30%), Gaps = 39/251 (15%) Query: 204 PQKPEDKGDPEGPEAGGAEQK-AASGCERLQGPPTPAGKETEGSLSDSDFKE-------P 255 P + ++G P P G K A G +GPP P G + +E P Sbjct: 917 PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 976 Query: 256 PSE----------GRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAG 305 P G A+ P G P GPA P G A Sbjct: 977 PGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG-----------PTGKQGDRGE-AGA 1024 Query: 306 EVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGP 365 + P GP GP+ P P + E K G G +G P P PGP Sbjct: 1025 QGPMGPSGPAGARGIQGPQGP----RGDKGEAGEPGERGLKGHRGFTGLQGLPGP--PGP 1078 Query: 366 IAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHP 425 Q G P P G + P+ P G + G+P Sbjct: 1079 SGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGP--RGRSGETGPAGPPGNP 1136 Query: 426 GPGPGPTTGPG 436 GP PGP PG Sbjct: 1137 GP-PGPPGPPG 1146 Score = 33.5 bits (75), Expect = 0.44 Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 11/92 (11%) Query: 287 PAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDK 346 P P G P + PPGP GP+ P + E + Sbjct: 31 PGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGP----------RGDRGDKGEKGAPGPR 80 Query: 347 VKDGGGGNEGSPCPP-CPGPIAGQALGGSRAS 377 +DG G G+P PP PGP LGG+ A+ Sbjct: 81 GRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA 112 >gi|110832843 TBP-associated factor 4 [Homo sapiens] Length = 1085 Score = 62.8 bits (151), Expect = 7e-10 Identities = 62/232 (26%), Positives = 81/232 (34%), Gaps = 27/232 (11%) Query: 211 GDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRT 270 G P GP A +A+ G + +P + G + +Q PP Sbjct: 187 GKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTV--IQTPPFV 244 Query: 271 GGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLA 330 G +P PAA PAP PA AP PP P P+ + PP P A Sbjct: 245 GAAAPPAPAAPSPPAAPAPAAPAAAP-----------PPPPPAPATLARPPGHPAGPPTA 293 Query: 331 KPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGP--IAGQ-ALGGSRASPAP-----AP 382 P + + G G +P P GP ++GQ G + A+PAP +P Sbjct: 294 AP------AVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESP 347 Query: 383 SRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTG 434 R A P S P A G T G+ P P PG TG Sbjct: 348 KRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTG 399 Score = 57.0 bits (136), Expect = 4e-08 Identities = 61/180 (33%), Positives = 67/180 (37%), Gaps = 41/180 (22%) Query: 274 SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPK 333 SPAG A A A PA P AP P P AG PG GGP PP P P V A P Sbjct: 66 SPAGAAGAGPAA-PAEGAPGAAPEP---PPAGRARPGGGGPQR-PGPPSPRRPLVPAGP- 119 Query: 334 LWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFP 393 A + K++ G+ GS C P P A A G A PA P+A Sbjct: 120 -------APPAAKLRPPPEGSAGS-CAPVPAA-AAVAAGPEPAPAGPAKPAGPAALAARA 170 Query: 394 GGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPGSHFNGLNQTVLNRADAL 453 G PG PGPGPGP GPG LN + AL Sbjct: 171 GPG-------------PG-------------PGPGPGPGPGPGKPAGPGAAQTLNGSAAL 204 Score = 51.6 bits (122), Expect = 2e-06 Identities = 83/295 (28%), Positives = 102/295 (34%), Gaps = 69/295 (23%) Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRL-D 262 P+ PE + G + +G GP PA EG+ + EPP GR Sbjct: 45 PRTPEVRAAAAGALGNHVVSGSPAGAAGA-GPAAPA----EGAPGAAP--EPPPAGRARP 97 Query: 263 ALQGPPRTGGPSP------AGPA--AARLAEDP---------APHYPAGAPAPGPHPAAG 305 GP R G PSP AGPA AA+L P P A A P P PA Sbjct: 98 GGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGP 157 Query: 306 EVPPGPG--------GPSVIHSPPPPPPPAVLAKP-----------KLWSLAEIATSSDK 346 P GP GP P P P P A P L S A + Sbjct: 158 AKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSL 217 Query: 347 VKDGGGGNEGSPCPPCPG------PIAGQALGGSRASPAPAPSRSPSAQC-----PFPGG 395 V +G P P PG P G A + A+P+P + +P+A P P Sbjct: 218 VNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAP 277 Query: 396 TVLSRPLYY------TAPFYP---GYTNYGSFGHLHGHPGPGPGPTTGPGSHFNG 441 L+RP + AP P N GS G P P P G + +G Sbjct: 278 ATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAG-----AAPAPAPAAGGPAGVSG 327 >gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] Length = 1745 Score = 62.4 bits (150), Expect = 9e-10 Identities = 85/283 (30%), Positives = 102/283 (36%), Gaps = 59/283 (20%) Query: 204 PQKPEDKGD-----PEGP--EAGGAEQKAASGCERLQGPPTPAGKETE----------GS 246 P +P KG P GP E G + + G E +GPP G+ + G Sbjct: 796 PGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGD 855 Query: 247 LSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYP-----------AGA 295 + P E L LQGPP G P P GP + +D P +P G Sbjct: 856 VGQDGAPGIPGEKGLPGLQGPP--GFPGPKGPPGHQ-GKDGRPGHPGQRGELGFQGQTGP 912 Query: 296 PAP----GPHPAAGEVPP-GPGGPSVIHSPPPPPPPAVLAKPKL----WSLAEIATSSDK 346 P P GP GEV P G GP P PP PP P L + E+ Sbjct: 913 PGPAGVLGPQGKTGEVGPLGERGP-----PGPPGPPGEQGLPGLEGREGAKGELGPPGPL 967 Query: 347 VKDGGGGNEGSPCPP-CPGPIAGQALGGSRASPAPAPSR-SPSAQCPF--PGGTVLSRPL 402 K+G G G P P PG L G + P P + SP + P GG L Sbjct: 968 GKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQS 1027 Query: 403 YYTAPFYPGYTNYGSFGHLHGHPG-------PGP-GPTTGPGS 437 P P GS G G PG PGP GP PG+ Sbjct: 1028 GSEGPVGPA-GKKGSRGE-RGPPGPTGKDGIPGPLGPLGPPGA 1068 Score = 54.7 bits (130), Expect = 2e-07 Identities = 76/268 (28%), Positives = 91/268 (33%), Gaps = 46/268 (17%) Query: 207 PEDKGDPEGPEAGGAEQ-----KAASGCERLQGPPTPAGKETEGSLSDSDFKEP------ 255 P + P GP EQ + G + GPP P GKE L F P Sbjct: 930 PLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRG--FPGPKGGPGD 987 Query: 256 PSEGRLDALQGPP----RTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEV---- 307 P L +GPP G P GP L P + + GP AG+ Sbjct: 988 PGPTGLKGDKGPPGPVGANGSPGERGP----LGPAGGIGLPGQSGSEGPVGPAGKKGSRG 1043 Query: 308 ---PPGPGGPSVIHSP--PPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP- 361 PPGP G I P P PP A + ++ K G G+ G P P Sbjct: 1044 ERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPG 1103 Query: 362 ------CPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPG---- 411 PGP G R P + F G V+ P P PG Sbjct: 1104 IRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVG--VIGPPGLQGLPGPPGEKGE 1161 Query: 412 YTNYGSFGHLHGHPGP-GP-GPTTGPGS 437 + GS G HG PGP GP GPT G+ Sbjct: 1162 VGDVGSMGP-HGAPGPRGPQGPTGSEGT 1188 Score = 47.0 bits (110), Expect = 4e-05 Identities = 64/229 (27%), Positives = 77/229 (33%), Gaps = 28/229 (12%) Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE----TEGSLSDSDFKEPPSEGRLD 262 P +KGDP + GG ASG GPP G EG + K P Sbjct: 1282 PGEKGDPG--DVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGP---- 1335 Query: 263 ALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEV-PPGPGGPSVIHSPP 321 GPP GP A R+ + P PG A G++ PPGP GPS + Sbjct: 1336 --DGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLK 1393 Query: 322 PPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP-------CPGPIAGQALGGS 374 P K + + I + + G G G PP PGPI GS Sbjct: 1394 GDTGPKG-EKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPI------GS 1446 Query: 375 RASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHG 423 P P P Q G P T P P G+ LHG Sbjct: 1447 LGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAGPPGPP-GAPAELHG 1494 Score = 46.2 bits (108), Expect = 7e-05 Identities = 69/269 (25%), Positives = 84/269 (31%), Gaps = 53/269 (19%) Query: 204 PQKPEDKGDPEGP--EAGGAEQKAASGCERLQG-------------PPTPAGKETEGSLS 248 PQ P P GP G + A G L G P P K G Sbjct: 510 PQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFG 569 Query: 249 DSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHY---PAGAPAPGPHPAAG 305 PP E +GPP P G A +P P P G+P P P Sbjct: 570 HVGQPGPPGEDGERGAEGPP-----GPTGQAG-----EPGPRGLLGPRGSPGPTGRPGVT 619 Query: 306 EVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSL----AEIATSSDKVKDGGGGNEGSP-CP 360 + PG + P P PP L I T +K G GN G P P Sbjct: 620 GIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEK---GPPGNPGIPGLP 676 Query: 361 PCPGPI---AGQALGGSRASPAPAPSRSPSAQCPFPG-----GTVLSRPLY-----YTAP 407 GP+ + G + + P S P +PG GT +R L Sbjct: 677 GSDGPLGHPGHEGPTGEKGAQGPPGSAGPPG---YPGPRGVKGTSGNRGLQGEKGEKGED 733 Query: 408 FYPGYTNYGSFGHLHGHPG-PGPGPTTGP 435 +PG+ G PG PGP GP Sbjct: 734 GFPGFKGDVGLKGDQGKPGAPGPRGEDGP 762 Score = 42.4 bits (98), Expect = 0.001 Identities = 48/182 (26%), Positives = 61/182 (33%), Gaps = 43/182 (23%) Query: 172 KKENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKP---------------------EDK 210 +K+NK WT + E + + D+ K + P P E Sbjct: 264 RKKNKEIWTSSPPPDSAENQTSTDIPKTETPAPNLPPTPTPLVVTSTVTTGLNATILERS 323 Query: 211 GDPE-GPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFK--EPPSEGRLDALQGP 267 DP+ G E G E KAA E E + S DF+ E PS + G Sbjct: 324 LDPDSGTELGTLETKAAREDE-----------EGDDSTMGPDFRAAEYPSRTQFQIFPGA 372 Query: 268 PRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPA 327 G PA + + APGP G P GP GP P PP PA Sbjct: 373 GEKGAKGE--PAVIEKGQQ----FEGPPGAPGPQGVVG--PSGPPGPPGFPGDPGPPGPA 424 Query: 328 VL 329 L Sbjct: 425 GL 426 >gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] Length = 1336 Score = 61.6 bits (148), Expect = 2e-09 Identities = 74/265 (27%), Positives = 97/265 (36%), Gaps = 45/265 (16%) Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263 P P+ P+GP G + G +QGPP P G +G + P S+G L Sbjct: 722 PPGPQGHLGPQGPP-GTQGMQGPPGPRGMQGPPHPHG--IQGGPGSQGIQGPVSQGPLMG 778 Query: 264 LQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAP----GPHPAAGEVPPGPG---GPSV 316 L PR G P GP R + PAP P GPHP G + GP GP Sbjct: 779 LN--PR-GMQGPPGP---RENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQE 832 Query: 317 IHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRA 376 I PPP + P + S + G +GS PP G + G + Sbjct: 833 IRGMQGPPPQGSMLGPPQELRGPPGSQSQQ-----GPPQGSLGPPPQGGMQGPPGPQGQQ 887 Query: 377 SPA--PAPSRSP-------------SAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHL 421 +PA P PS+ P + PF + P P PG G+ G + Sbjct: 888 NPARGPHPSQGPIPFQQQKTPLLGDGPRAPFNQEGQSTGP----PPLIPGLGQQGAQGRI 943 Query: 422 HG-----HPGPGPGPTTGPGSHFNG 441 PGP G + GP +H G Sbjct: 944 PPLNPGQGPGPNKGDSRGPPNHHMG 968 Score = 61.2 bits (147), Expect = 2e-09 Identities = 69/261 (26%), Positives = 91/261 (34%), Gaps = 57/261 (21%) Query: 204 PQKPEDKGDPEGP--EAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRL 261 P P+ + P+GP GG + G + QGPP +G D P Sbjct: 628 PPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPP-------QGLPRPQDMHGP------ 674 Query: 262 DALQGPPRTGGP-SPAGPAAARLAEDPAPHY-PAGAPAPGPHPAAGEVPPGPGGPSVIHS 319 +Q P GP P GP + + P H P G P P H + PPGP G Sbjct: 675 QGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGH-IGPQGPPGPQGHLGPQG 733 Query: 320 PP-------PPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALG 372 PP PP P + P + GG G++G P GP+ G Sbjct: 734 PPGTQGMQGPPGPRGMQGPPHPHGI-----------QGGPGSQGIQGPVSQGPLMGLNPR 782 Query: 373 GSRASPAPAPSRSPSAQCPFPGGTVLSR-PLYYTAPFYPGYTNYGSFGH----------L 421 G + P P ++ P+ P G ++ P P PG G GH + Sbjct: 783 GMQGPPGPRENQGPA-----PQGMIMGHPPQEMRGPHPPG----GLLGHGPQEMRGPQEI 833 Query: 422 HGHPGPGP-GPTTGPGSHFNG 441 G GP P G GP G Sbjct: 834 RGMQGPPPQGSMLGPPQELRG 854 Score = 35.0 bits (79), Expect = 0.15 Identities = 48/180 (26%), Positives = 61/180 (33%), Gaps = 29/180 (16%) Query: 280 AARLAEDPAPHYPAGAPAPGPHPAAGEVP------------PGPGGPSVIHSPPPPPPPA 327 A + E P +G P GP P G+ P P P + PP P Sbjct: 565 AQKQVEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQG 624 Query: 328 VLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCP-GPIAG----QALGGSRASPA-PA 381 P ++ + GGGG +G P P GP G Q + G + P Sbjct: 625 QFRPP--GPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPG 682 Query: 382 PSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGP----GPTTGPGS 437 P Q P PG S P + P P G GH+ PGP GP PG+ Sbjct: 683 PHGPLGPQGP-PGPQGSSGPQGHMGPQGPP----GPQGHIGPQGPPGPQGHLGPQGPPGT 737 Score = 32.7 bits (73), Expect = 0.75 Identities = 66/265 (24%), Positives = 85/265 (32%), Gaps = 49/265 (18%) Query: 203 EPQKPEDKGDPEGPE----AGGAEQKAASGCE-RLQGPPTPAGK------ETEGSLSDSD 251 E ++P D+ P PE G E+ G R +G P G+ E G + D Sbjct: 1078 EGRRPGDERFPRDPEDPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPGPEDFGPEENFD 1137 Query: 252 FKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGP 311 E + GR L+G R G G D P + G P G PGP Sbjct: 1138 ASEEAARGR--DLRGRGR--GTPRGGRKGLLPTPDEFPRFEGGRK---PDSWDGNREPGP 1190 Query: 312 GGPSVIHSPPPPPPPAVLAKP---------KLWSLAEIATSSDKVKDGGGGNEGSPCPPC 362 G +P P PP P + +A + DG G +E Sbjct: 1191 GHEHFRDTPRPDHPPHDGHSPASRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMEAP 1250 Query: 363 PGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLH 422 GP + G R P PA R P + R + GY FG Sbjct: 1251 GGPSEDRG-GKGRGGPGPA-QRVPKS----------GRSSSLDGEHHDGYHRDEPFG--- 1295 Query: 423 GHPGPG-------PGPTTGPGSHFN 440 G PG G G G GS+ N Sbjct: 1296 GPPGSGTPSRGGRSGSNWGRGSNMN 1320 >gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] Length = 1690 Score = 59.7 bits (143), Expect = 6e-09 Identities = 76/270 (28%), Positives = 86/270 (31%), Gaps = 44/270 (16%) Query: 198 KNDEDEPQKPEDKGDPEGPEAGGAE----QKAASGCERLQ--GPPTPAG----KETEGSL 247 + D P P KG P G QK G L GPP P G K G Sbjct: 1156 QGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLKGERGDP 1215 Query: 248 SDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAED------------PAPHYPAGA 295 P G+ P +G P PAG A R +D P P P GA Sbjct: 1216 GSPGISPPGPRGKKGPPGPPGSSGPPGPAG-ATGRAPKDIPDPGPPGDQGPPGPDGPRGA 1274 Query: 296 PAPGPHPAAGEVPPGPGGPSVIHSPP----PPPPPAVLAKPKLWSLAEIATSSDKVKDGG 351 P P P + ++ G G + PP PP PP P KDG Sbjct: 1275 PGPPGLPGSVDLLRGEPGDCGLPGPPGPPGPPGPPGYKGFP-----------GCDGKDGQ 1323 Query: 352 GGNEGSPCPP----CPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAP 407 G G P P PGP + L G P P + P P V P P Sbjct: 1324 KGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRGE-PGPPADVDDCPRIPGLP 1382 Query: 408 FYPGYTNYGSFGHLHGHPGP-GPGPTTGPG 436 PG L G GP GPG PG Sbjct: 1383 GAPGMRGPEGAMGLPGMRGPSGPGCKGEPG 1412 Score = 50.1 bits (118), Expect = 5e-06 Identities = 70/261 (26%), Positives = 87/261 (33%), Gaps = 66/261 (25%) Query: 209 DKGDPEGP---EAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQ 265 ++GDP P G +K G GPP PAG T + D PP + Q Sbjct: 1211 ERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGA-TGRAPKDIPDPGPPGD------Q 1263 Query: 266 GPPRTGGPSPA-GPAAARLAED-----------PAPHYPAGAPAP--------------- 298 GPP GP A GP + D P P P G P P Sbjct: 1264 GPPGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQ 1323 Query: 299 ----------GPHPAAGEV-------PPGPGGPSVIHSP--PPPPPPAVLAKPKLWSLAE 339 GPH G PPG GP+ + P P PP V P++ L Sbjct: 1324 KGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLP- 1382 Query: 340 IATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSR------ASPAPAPSRSPSAQCPFP 393 + +G G G P PG L G R SP P + + + +P Sbjct: 1383 -GAPGMRGPEGAMGLPGMRGPSGPGCKGEPGLDGRRGVDGVPGSPGPPGRKGDTGEDGYP 1441 Query: 394 GGTVLSRPLYYTAP--FYPGY 412 GG P+ P F PGY Sbjct: 1442 GGPGPPGPIGDPGPKGFGPGY 1462 Score = 45.4 bits (106), Expect = 1e-04 Identities = 67/258 (25%), Positives = 85/258 (32%), Gaps = 43/258 (16%) Query: 200 DEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEG 259 D P + + GD P G + C + GPP P G L E G Sbjct: 371 DPGFPGRYGETGDVGPPGPPGLLGRPGEACAGMIGPPGPQGFPGLPGLPG----EAGIPG 426 Query: 260 RLDALQGPP-RTGGPS-PAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEV-PPGPGGPS- 315 R D+ G P + G P P P L + G PGP G+V PPG GP Sbjct: 427 RPDSAPGKPGKPGSPGLPGAPGLQGLPGSSVIYCSVG--NPGPQGIKGKVGPPGGRGPKG 484 Query: 316 -------VIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAG 368 P P PP P + D G G +G P P PG Sbjct: 485 EKGNEGLCACEPGPMGPPGPPGLP-----GRQGSKGDLGLPGWLGTKGDPGP--PGAEGP 537 Query: 369 QALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTA-------PFYPGYT-NYGSFGH 420 L G + P ++ G V+SR + P +PG ++G GH Sbjct: 538 PGLPGKHGASGPPGNKGAK------GDMVVSRVKGHKGERGPDGPPGFPGQPGSHGRDGH 591 Query: 421 LHGHPGPGPGPTTGPGSH 438 PGP PG H Sbjct: 592 AGEKGDPGP-----PGDH 604 Score = 44.7 bits (104), Expect = 2e-04 Identities = 48/176 (27%), Positives = 58/176 (32%), Gaps = 16/176 (9%) Query: 209 DKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPP 268 +KGDP P G + A G + GP P GK F PP E + G P Sbjct: 594 EKGDPGPP---GDHEDATPGGKGFPGPLGPPGKAGPVGPPGLGFPGPPGERGHPGVPGHP 650 Query: 269 RTGGP----SPAGPAAARLAEDPAPHYPAGAPA-PGPHPAAG-EVPPGPGGPSVIHSPPP 322 GP G + P H P G PGP G + PG G P Sbjct: 651 GVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPGPQGAPGLSGSDGHKGRPG 710 Query: 323 PPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASP 378 P A + P D G GG +GS PGP + G + P Sbjct: 711 TPGTAEIPGPP-------GFRGDMGDPGFGGEKGSSPVGPPGPPGSPGVNGQKGIP 759 Score = 43.1 bits (100), Expect = 6e-04 Identities = 44/140 (31%), Positives = 53/140 (37%), Gaps = 21/140 (15%) Query: 203 EPQKPEDKGD-PEGPEAGGAE-QKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGR 260 EP P D D P P GA + G L G P+G +G EP +GR Sbjct: 1365 EPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSGPGCKG--------EPGLDGR 1416 Query: 261 LDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPS----V 316 + G P G P P G R + YP G PGP G GPG V Sbjct: 1417 R-GVDGVP--GSPGPPG----RKGDTGEDGYPGGPGPPGPIGDPGPKGFGPGYLGGFLLV 1469 Query: 317 IHSPPPPPPPAVLAKPKLWS 336 +HS P L P+LW+ Sbjct: 1470 LHSQTDQEPTCPLGMPRLWT 1489 Score = 38.5 bits (88), Expect = 0.014 Identities = 65/285 (22%), Positives = 81/285 (28%), Gaps = 59/285 (20%) Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263 P P ++G P P G + G + +G G F PP Sbjct: 635 PGPPGERGHPGVPGHPGV--RGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPG 692 Query: 264 LQGPPRTGGPS-----PAGPAAARLAEDPA-------PHY-------PAGAPAPGPHPAA 304 QG P G P P A + P P + P G P P P Sbjct: 693 PQGAPGLSGSDGHKGRPGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPPGSPGV 752 Query: 305 GEVPPGPGGPSVIHSPPP---------------PPPPAVLAKPKLWSLAEIATSSDKVKD 349 PG P+ H PP P A+ + K ++ Sbjct: 753 NGQKGIPGDPAFGHLGPPGKRGLSGVPGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGRE 812 Query: 350 GGGGNEGSPCPP----------------CPGPIAGQALGGSRASPAPAPSRSPSAQCPFP 393 G G G P PP PG G + P P+ P Sbjct: 813 GHAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLP 872 Query: 394 GGTVLSRPLYYTAPFYPGYTNYGSFGH--LHGHPGPGPGPTTGPG 436 G + RP + P PG G FG L G PGP GP PG Sbjct: 873 G--LPGRPGAHGPPGLPGIP--GPFGDDGLPGPPGP-KGPRGLPG 912 Score = 35.4 bits (80), Expect = 0.12 Identities = 71/289 (24%), Positives = 88/289 (30%), Gaps = 71/289 (24%) Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAG-KETEGSLSDSDFKEPPSEGRLD 262 P P ++G P GA K G + + G P G + +G++ P EG + Sbjct: 914 PGFPGERGKPGAEGCPGA--KGEPGEKGMSGLPGDRGLRGAKGAIGP-----PGDEGEMA 966 Query: 263 ALQGPPRTGGPSPAG-------------PAAARLAEDPAPHYPAGAPAPGPHPAAGEVPP 309 + G P P G P +P + P G P PP Sbjct: 967 IISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEKGQPGPP 1026 Query: 310 GPGGP-------SVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPC--- 359 GP GP I P P P + I + G GN+G P Sbjct: 1027 GPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGAR-----GPKGNKGDPASHF 1081 Query: 360 -----------PPCPGPIAG---------QALGGSRASPAPAPSRSPSAQCPFPGGTVLS 399 P CPG Q GS P P S P CP G Sbjct: 1082 GPPGPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPG-CPGDHGMPGL 1140 Query: 400 RPLYYTAPFYPGYTNYGSFGHLHGHPG-PGP----GPTTGPGSHFNGLN 443 R PG L G PG PGP GP+ PG NGL+ Sbjct: 1141 RG-------QPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPG--LNGLH 1180 >gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] Length = 663 Score = 58.5 bits (140), Expect = 1e-08 Identities = 63/224 (28%), Positives = 81/224 (36%), Gaps = 51/224 (22%) Query: 237 TPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAP 296 TP G E S PPS+ P P+ A AAA +A A YP G Sbjct: 89 TPLGPEHMAQASTLGLS-PPSQAF------PAHPEAPAAAARAAALVAHPGAGSYPCGGG 141 Query: 297 APGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEG 356 + G P+A P P P+ PPPPPPP +L+ T++ GGGG+ G Sbjct: 142 SSGAQPSAPPPPAPPLPPTPSPPPPPPPPPPP-------ALSGYTTTN----SGGGGSSG 190 Query: 357 ----------------SPCPPCPG-PIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLS 399 +P G P+ G+ G+ + PAP P G +S Sbjct: 191 KGHSRDFVLRRDLSATAPAAAMHGAPLGGEQRSGTGSPQHPAPP-------PHSAGMFIS 243 Query: 400 RPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPGSHFNGLN 443 Y P G F LH PG PG H + LN Sbjct: 244 ASGTYAGP--DGSGGPALFPALHDTPG-------APGGHPHPLN 278 Score = 40.0 bits (92), Expect = 0.005 Identities = 46/159 (28%), Positives = 55/159 (34%), Gaps = 41/159 (25%) Query: 273 PSPAGPAAARLAEDPAPHYPAGAPAPG--------------------PHPAAGEVPPGPG 312 P PA P A+ P H+P A G P AG PP P Sbjct: 356 PPPAPPPPPAPAQHPHQHHPHLPGAAGAFLRYMRQPIKQELICKWIDPDELAGLPPPPPP 415 Query: 313 GPSVIHSPPPPPPPAVLAKP--KLWSLAEIATSSDKVKDGGGGNEGS------PCPPCPG 364 P PPPPPPPA AKP K + + V+ GG + S CP Sbjct: 416 PP-----PPPPPPPAGGAKPCSKTFGTMHELVNHVTVEHVGGPEQSSHVCFWEDCPREGK 470 Query: 365 PIAG--QALGGSRASPAPAPSRSPSAQCPFPG-GTVLSR 400 P + + R P CPFPG G V +R Sbjct: 471 PFKAKYKLINHIRVHTGEKP-----FPCPFPGCGKVFAR 504 Score = 33.9 bits (76), Expect = 0.34 Identities = 47/153 (30%), Positives = 57/153 (37%), Gaps = 40/153 (26%) Query: 220 GAEQKAASGCERLQGPP------------TPAGKETEG--SLSDSDFKEPPSEG-RLDAL 264 G EQ++ +G + PP T AG + G +L + P + G L Sbjct: 218 GGEQRSGTGSPQHPAPPPHSAGMFISASGTYAGPDGSGGPALFPALHDTPGAPGGHPHPL 277 Query: 265 QGPPRTGGPSPAGPAAARL---AEDP-AP-----HYPAGAPAPGPH-------------- 301 G R G + A AAA L AE P AP HY A A A Sbjct: 278 NGQMRLGLAAAAAAAAAELYGRAEPPFAPRSGDAHYGAVAAAAAAALHGYGAVNLNLNLA 337 Query: 302 PAAGEVPPGPGGPSVIHSPP--PPPPPAVLAKP 332 AA GPG H+PP PPPPPA P Sbjct: 338 AAAAAAAAGPGPHLQHHAPPPAPPPPPAPAQHP 370 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.309 0.131 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,636,123 Number of Sequences: 37866 Number of extensions: 2327506 Number of successful extensions: 35874 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 813 Number of HSP's successfully gapped in prelim test: 2018 Number of HSP's that attempted gapping in prelim test: 14572 Number of HSP's gapped (non-prelim): 12081 length of query: 483 length of database: 18,247,518 effective HSP length: 106 effective length of query: 377 effective length of database: 14,233,722 effective search space: 5366113194 effective search space used: 5366113194 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.