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Search of human proteins with 139394646
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
(483 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 1018 0.0
gi|197100900 iroquois homeobox 2 [Homo sapiens] 372 e-103
gi|39930475 iroquois homeobox 2 [Homo sapiens] 372 e-103
gi|226371735 iroquois homeobox 3 [Homo sapiens] 222 5e-58
gi|7705555 iroquois homeobox 4 [Homo sapiens] 204 1e-52
gi|51479177 iroquois homeobox protein 1 [Homo sapiens] 190 2e-48
gi|42544241 iroquois homeobox protein 6 [Homo sapiens] 176 6e-44
gi|178057337 mohawk homeobox [Homo sapiens] 81 2e-15
gi|33286446 opioid growth factor receptor [Homo sapiens] 75 1e-13
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 74 2e-13
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 69 1e-11
gi|56549694 enabled homolog isoform a [Homo sapiens] 68 2e-11
gi|39930375 enabled homolog isoform b [Homo sapiens] 68 2e-11
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 68 2e-11
gi|163965366 nascent polypeptide-associated complex alpha subuni... 68 2e-11
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 67 4e-11
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 67 4e-11
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 67 4e-11
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 65 1e-10
gi|55750053 atrophin-1 [Homo sapiens] 65 2e-10
gi|55750041 atrophin-1 [Homo sapiens] 65 2e-10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 64 3e-10
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 64 4e-10
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 63 7e-10
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 63 7e-10
gi|110832843 TBP-associated factor 4 [Homo sapiens] 63 7e-10
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 62 9e-10
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 62 2e-09
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 60 6e-09
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 59 1e-08
>gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
Length = 483
Score = 1018 bits (2631), Expect = 0.0
Identities = 483/483 (100%), Positives = 483/483 (100%)
Query: 1 MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPG 60
MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPG
Sbjct: 1 MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPG 60
Query: 61 YNSHLQYGADPAAAAAAAFSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPYGDPAYRKNA 120
YNSHLQYGADPAAAAAAAFSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPYGDPAYRKNA
Sbjct: 61 YNSHLQYGADPAAAAAAAFSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPYGDPAYRKNA 120
Query: 121 TRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWT 180
TRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWT
Sbjct: 121 TRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWT 180
Query: 181 PRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAG 240
PRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAG
Sbjct: 181 PRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAG 240
Query: 241 KETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGP 300
KETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGP
Sbjct: 241 KETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGP 300
Query: 301 HPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCP 360
HPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCP
Sbjct: 301 HPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCP 360
Query: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420
PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH
Sbjct: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420
Query: 421 LHGHPGPGPGPTTGPGSHFNGLNQTVLNRADALAKDPKMLRSQSQLDLCKDSPYELKKGM 480
LHGHPGPGPGPTTGPGSHFNGLNQTVLNRADALAKDPKMLRSQSQLDLCKDSPYELKKGM
Sbjct: 421 LHGHPGPGPGPTTGPGSHFNGLNQTVLNRADALAKDPKMLRSQSQLDLCKDSPYELKKGM 480
Query: 481 SDI 483
SDI
Sbjct: 481 SDI 483
>gi|197100900 iroquois homeobox 2 [Homo sapiens]
Length = 471
Score = 372 bits (954), Expect = e-103
Identities = 219/432 (50%), Positives = 255/432 (59%), Gaps = 50/432 (11%)
Query: 1 MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSP- 59
MSYPQGYLYQ SLALYSCPAY S ++ PR++EL RS+SGSAFSPY GS AFTA +
Sbjct: 1 MSYPQGYLYQAPGSLALYSCPAYGASALAAPRSEELARSASGSAFSPYPGSAAFTAQAAT 60
Query: 60 GYNSHLQYGADPAAAAAAAFSSYVGSPYD-HTPGMAGSLGYHPYAAPLGSYPYGDPAYRK 118
G+ S LQY AD AAAAAA F SY+G+PYD HT GM G++ YHPY + Y DPAYRK
Sbjct: 61 GFGSPLQYSAD-AAAAAAGFPSYMGAPYDAHTTGMTGAISYHPYGSAAYPYQLNDPAYRK 119
Query: 119 NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 178
NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT
Sbjct: 120 NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 179
Query: 179 WTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAG-------------GAEQKA 225
W PRN+SEDE+E+E D ++ ++ P K ++ + + G AE
Sbjct: 180 WAPRNKSEDEDEDEG-DATRSKDESPDKAQEGTETSAEDEGISLHVDSLTDHSCSAESDG 238
Query: 226 ASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAE 285
R P +G E + D + E E L PP+ SP A L
Sbjct: 239 EKLPCRAGDPLCESGSECKDKYDDLEDDEDDDEEGERGL-APPKPVTSSPLTGLEAPLLS 297
Query: 286 DPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSD 345
P P AP G G + P PPPA +KPKLWSLAEIATS
Sbjct: 298 PP----PEAAPRGGRKTPQGS-----------RTSPGAPPPA--SKPKLWSLAEIATSDL 340
Query: 346 KVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYT 405
K G P C P G A+ APA + +P P+P +L RPLYYT
Sbjct: 341 KQPSLG--------PGCGPP-------GLPAAAAPASTGAPPGGSPYPASPLLGRPLYYT 385
Query: 406 APFYPGYTNYGS 417
+PFY YTNYG+
Sbjct: 386 SPFYGNYTNYGN 397
>gi|39930475 iroquois homeobox 2 [Homo sapiens]
Length = 471
Score = 372 bits (954), Expect = e-103
Identities = 219/432 (50%), Positives = 255/432 (59%), Gaps = 50/432 (11%)
Query: 1 MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSP- 59
MSYPQGYLYQ SLALYSCPAY S ++ PR++EL RS+SGSAFSPY GS AFTA +
Sbjct: 1 MSYPQGYLYQAPGSLALYSCPAYGASALAAPRSEELARSASGSAFSPYPGSAAFTAQAAT 60
Query: 60 GYNSHLQYGADPAAAAAAAFSSYVGSPYD-HTPGMAGSLGYHPYAAPLGSYPYGDPAYRK 118
G+ S LQY AD AAAAAA F SY+G+PYD HT GM G++ YHPY + Y DPAYRK
Sbjct: 61 GFGSPLQYSAD-AAAAAAGFPSYMGAPYDAHTTGMTGAISYHPYGSAAYPYQLNDPAYRK 119
Query: 119 NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 178
NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT
Sbjct: 120 NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 179
Query: 179 WTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAG-------------GAEQKA 225
W PRN+SEDE+E+E D ++ ++ P K ++ + + G AE
Sbjct: 180 WAPRNKSEDEDEDEG-DATRSKDESPDKAQEGTETSAEDEGISLHVDSLTDHSCSAESDG 238
Query: 226 ASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAE 285
R P +G E + D + E E L PP+ SP A L
Sbjct: 239 EKLPCRAGDPLCESGSECKDKYDDLEDDEDDDEEGERGL-APPKPVTSSPLTGLEAPLLS 297
Query: 286 DPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSD 345
P P AP G G + P PPPA +KPKLWSLAEIATS
Sbjct: 298 PP----PEAAPRGGRKTPQGS-----------RTSPGAPPPA--SKPKLWSLAEIATSDL 340
Query: 346 KVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYT 405
K G P C P G A+ APA + +P P+P +L RPLYYT
Sbjct: 341 KQPSLG--------PGCGPP-------GLPAAAAPASTGAPPGGSPYPASPLLGRPLYYT 385
Query: 406 APFYPGYTNYGS 417
+PFY YTNYG+
Sbjct: 386 SPFYGNYTNYGN 397
>gi|226371735 iroquois homeobox 3 [Homo sapiens]
Length = 501
Score = 222 bits (566), Expect = 5e-58
Identities = 160/402 (39%), Positives = 200/402 (49%), Gaps = 48/402 (11%)
Query: 46 SPYAGSTAFTAPSPGYNSHLQYGAD-PAAAAAAAFSSYVGSPYDHTPGMAGSLGY-HPYA 103
+PYA + A A + GY + L Y A+ P A SP P A + + HP
Sbjct: 59 APYAAAAA-AAAAQGYGAFLPYAAELPIFPQLGAQYELKDSPGVQHPAAAAAFPHPHPAF 117
Query: 104 APLGSYPYGDPAYRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTW 163
P G Y +GDP+ KNATR++T+TLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTW
Sbjct: 118 YPYGQYQFGDPSRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTW 177
Query: 164 FANARRRLKKENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQ 223
FANARRRLKKENKMTW PR+R+++E + E+ DE+E ++ +G E+
Sbjct: 178 FANARRRLKKENKMTWAPRSRTDEEGNAYGSEREEEDEEEDEE-------DGKRELELEE 230
Query: 224 KAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARL 283
+ G E G A + + + + +E L +L G R G GP +
Sbjct: 231 EELGGEEEDTGGEGLADDDEDEEIDLENLDGAATEPEL-SLAGAARRDGDLGLGPISDSK 289
Query: 284 AEDPAPH--------YPAGAPAPGPHPAAGEVPPGPGGP-SVIHSPPPPPPPAVLAKPKL 334
D P + AP P P A P P P S+ P P P + L KPK+
Sbjct: 290 NSDSEDSSEGLEDRPLPVLSLAPAPPPVAVASPSLPSPPVSLDPCAPAPAPASALQKPKI 349
Query: 335 WSLAEIATSSDKVKDGGGGNEGSPCPPCPG-PIAGQALGGSRASPAPAPSRSPSAQCPFP 393
WSLAE ATS D + G GSP PG +A AL S A+ A A R SA P
Sbjct: 350 WSLAETATSPDNPRRSPPGAGGSP----PGAAVAPSALQLSPAAAAAAAHRLVSA----P 401
Query: 394 GGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGP 435
G +P +TN PGP PGP P
Sbjct: 402 LGK------------FPAWTN-------RPFPGPPPGPRLHP 424
>gi|7705555 iroquois homeobox 4 [Homo sapiens]
Length = 519
Score = 204 bits (519), Expect = 1e-52
Identities = 150/402 (37%), Positives = 193/402 (48%), Gaps = 40/402 (9%)
Query: 12 SASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPGYNSHLQYGADP 71
SA +Y CP Y + +++ R + ++ G PY GS GY +++ YG++
Sbjct: 42 SAQAPVY-CPVYESRLLATARHELNSAAALGVYGGPYGGSQ-------GYGNYVTYGSEA 93
Query: 72 AAAAAA-AFSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPYG------DPAYRKNATRDA 124
+A + +F S GS H + Y+PY LG YPY RKNATR+
Sbjct: 94 SAFYSLNSFDSKDGSGSAHGGLAPAAAAYYPYEPALGQYPYDRYGTMDSGTRRKNATRET 153
Query: 125 TATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNR 184
T+TLKAWL EHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTW PRN+
Sbjct: 154 TSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWPPRNK 213
Query: 185 SEDE-----EEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPA 239
DE E EE E+ +EP K +P G E E + L+ P
Sbjct: 214 CADEKRPYAEGEEEEGGEEEAREEPLKSSKNAEPVGKEEKELELSDLDDFDPLEAEPPAC 273
Query: 240 GKETEGSLSDSDFKEPPS--EGRLDALQGPPRTGGPSPAGPAAARLAED-PAPHYPAGAP 296
+ D + P+ +G + G R S A A L ED +
Sbjct: 274 ELKPPFHSLDGGLERVPAAPDGPVKEASGALRM---SLAAGGGAALDEDLERARSCLRSA 330
Query: 297 APGPHPAAGEVPPGPGGPSVIHSP----PPPPPPAVLAKPKLWSLAEIATSSDKVKDGGG 352
A GP P +P GGP V + P + AKP++WSLA AT++
Sbjct: 331 AAGPEP----LPGAEGGPQVCEAKLGFVPAGASAGLEAKPRIWSLAHTATAAAAAATSLS 386
Query: 353 GNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPG 394
E P C G A + A+ + AP+ SPS P G
Sbjct: 387 QTE---FPSCMLKRQGPA---APAAVSSAPATSPSVALPHSG 422
>gi|51479177 iroquois homeobox protein 1 [Homo sapiens]
Length = 480
Score = 190 bits (483), Expect = 2e-48
Identities = 170/466 (36%), Positives = 215/466 (46%), Gaps = 94/466 (20%)
Query: 1 MSYPQ-GYLYQPSASL----------ALYSCPAYSTSVISG-PRTDELGRSSSGSAFSPY 48
MS+PQ GY SA+ L + A + + SG P ELG + +A +
Sbjct: 1 MSFPQLGYPQYLSAAGPGAYGGERPGVLAAAAAAAAAASSGRPGAAELGGGAGAAAVTSV 60
Query: 49 AGSTAFTAP---SPGYNSHLQYGADPAAAAAAAFSSYVGSPYDHTPGMAGSLGYHP--YA 103
G A P +P Y++ L Y AD + S +GS Y+ + + G HP +A
Sbjct: 61 LGMYAAAGPYAGAPNYSAFLPYAAD------LSLFSQMGSQYE----LKDNPGVHPATFA 110
Query: 104 A-------PLGSYPYGDPAYRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMT 156
A P G + YGDP KNATR++T+TLKAWLNEHRKNPYPTKGEKIMLAIITKMT
Sbjct: 111 AHTAPAYYPYGQFQYGDPGRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMT 170
Query: 157 LTQVSTWFANARRRLKKENKMTWTPRNRSEDE---------------EEEENIDLEKNDE 201
LTQVSTWFANARRRLKKENK+TW R++ +++ E++E IDLE D
Sbjct: 171 LTQVSTWFANARRRLKKENKVTWGARSKDQEDGALFGSDTEGDPEKAEDDEEIDLESIDI 230
Query: 202 D-------EPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDF-K 253
D + +D+ E P A A S R QG P A + S K
Sbjct: 231 DKIDEHDGDQSNEDDEDKAEAPHA----PAAPSALARDQGSPLAAADVLKPQDSPLGLAK 286
Query: 254 EPPSEGRLDALQGPPRTGG--PSPAG-PAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPG 310
E P G L GG +P G P LAE P GAP P P AG PG
Sbjct: 287 EAPEPGSTRLLSPGAAAGGLQGAPHGKPKIWSLAETATS--PDGAPKASPPPPAGH--PG 342
Query: 311 PGGPSVIHSPPPPPPPAVLAKPKLWS--------------LAEIATSSDKVKDGGGGNEG 356
GPS + P PA L L++ LA+ + + + G G
Sbjct: 343 AHGPS---AGAPLQHPAFLPSHGLYTCHIGKFSNWTNSAFLAQGSLLNMRSFLGVGAPHA 399
Query: 357 S------PCPPCPGP---IAGQALGGSRASPAPAPSRSPSAQCPFP 393
+ P PP P P IA AL G +AS +P+ P P
Sbjct: 400 APHGPHLPAPPPPQPPVAIAPGALNGDKASVRSSPTLPERDLVPRP 445
>gi|42544241 iroquois homeobox protein 6 [Homo sapiens]
Length = 446
Score = 176 bits (445), Expect = 6e-44
Identities = 147/431 (34%), Positives = 181/431 (41%), Gaps = 92/431 (21%)
Query: 20 CPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPGYNSHLQYGADPAAAAAAA- 78
C Y + ++ R + G+A Y A A + Y +L Y +P + A
Sbjct: 49 CAPYDSRLLGSARPE------LGAALGIYGAPYAAAAAAQSYPGYLPYSPEPPSLYGALN 102
Query: 79 ----FSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPY--------GDPAYRKNATRDATA 126
F GS T +A Y+PY LG Y Y RKNATR+ T+
Sbjct: 103 PQYEFKEAAGS---FTSSLAQPGAYYPYERTLGQYQYERYGAVELSGAGRRKNATRETTS 159
Query: 127 TLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNRSE 186
TLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTW P+N+
Sbjct: 160 TLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWAPKNKGG 219
Query: 187 DEE-----EEENI----------------------DLEKNDEDEPQKPEDKGDPEGPEAG 219
+E EE+++ DLE +E+E ++ E + + AG
Sbjct: 220 EERKAEGGEEDSLGCLTADTKEVTASQEARGLRLSDLEDLEEEEEEEEEAEDEEVVATAG 279
Query: 220 GAEQKAASGCERLQGPPTPAGKETEGSLSDSD---------FKEPPSEGRLDALQ---GP 267
+ G + L GP A EG L + F +P D L G
Sbjct: 280 DRLTEFRKGAQSLPGPCAAA---REGRLERRECGLAAPRFSFNDPSGSEEADFLSAETGS 336
Query: 268 PRTGGPSPA--GPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPP 325
PR P P LA GAP P P + E PG P
Sbjct: 337 PRLTMHYPCLEKPRIWSLAHTATASAVEGAPPARPRPRSPECRMIPG-----------QP 385
Query: 326 PAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRS 385
PA S ++ D D S C P AL G + AP P RS
Sbjct: 386 PA--------SARRLSVPRDSACD------ESSCIPKAFGNPKFALQGLPLNCAPCPRRS 431
Query: 386 -PSAQCPFPGG 395
P QC +P G
Sbjct: 432 EPVVQCQYPSG 442
>gi|178057337 mohawk homeobox [Homo sapiens]
Length = 352
Score = 81.3 bits (199), Expect = 2e-15
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 5/149 (3%)
Query: 112 GDPAYRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 171
G +++ A +D LK WL +HR NPYPTK EKI+LA+ ++MTL QVS WFANARRRL
Sbjct: 69 GKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNWFANARRRL 128
Query: 172 K---KENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPE-GPEAGGAEQKAAS 227
K ++ ++W R + ++ + N + D+ + + P GG
Sbjct: 129 KNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEGGYNTPVHH 188
Query: 228 GCERLQGPPTPAGKETEGSLSDSDFKEPP 256
+ + AG E S+ D+ PP
Sbjct: 189 PVIKSENSVIKAGVRPESRASE-DYVAPP 216
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 75.5 bits (184), Expect = 1e-13
Identities = 67/203 (33%), Positives = 85/203 (41%), Gaps = 20/203 (9%)
Query: 208 EDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGP 267
E GD +GGA+ A +G G P AG G D++ + P EG + P
Sbjct: 463 EGAGDSAAVASGGAQTLALAGSPAPSGHPK-AGHSENGVEEDTEGRTGPKEGTPGS---P 518
Query: 268 PRTGGPSPAGPAAARLAEDPA------PHYPAG-APAPGPHPAAGEVPPGPGGPSVIHSP 320
T GPSPAGPA AE P+ P PAG PA P G P GP G SP
Sbjct: 519 SETPGPSPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESP 578
Query: 321 PPPPPPAVLAKPKLWSLAEIATSSDKVKDGG-GGNEGSPCP-PCPGPIAGQALGGSRASP 378
P P+ A P AE + + + G G+E + P PGP + G + P
Sbjct: 579 SETPGPSP-AGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGP---RPAGPAGDEP 634
Query: 379 APAPSRSPSAQCPFPGGTVLSRP 401
A +PS +P P P G P
Sbjct: 635 AESPSETPG---PSPAGPTRDEP 654
Score = 55.8 bits (133), Expect = 8e-08
Identities = 44/129 (34%), Positives = 52/129 (40%), Gaps = 18/129 (13%)
Query: 202 DEPQKPEDKGDPEGPE-AGGAEQKAASGCERLQGPPT--PAGKETEGSLSDSDFKEPPSE 258
DEP E + GP AG A + A GP PAG E S S++ P
Sbjct: 532 DEPA--ESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGP 589
Query: 259 GRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIH 318
R + + P T GP PAGPA AE P + PGP PA GP G
Sbjct: 590 TRDEPAESPSETPGPRPAGPAGDEPAESP-------SETPGPRPA------GPAGDEPAE 636
Query: 319 SPPPPPPPA 327
SP P P+
Sbjct: 637 SPSETPGPS 645
Score = 42.7 bits (99), Expect = 7e-04
Identities = 36/106 (33%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 202 DEPQKPEDKGDPEGPE-AGGAEQKAASGCERLQGPPTPAGK---ETEGSLSDSDFKEPPS 257
DEP E + GP AG A + A GP +PAG E S S++ P
Sbjct: 552 DEPA--ESPSETPGPRPAGPAGDEPAESPSETPGP-SPAGPTRDEPAESPSETPGPRPAG 608
Query: 258 EGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPA 303
+ + P T GP PAGPA AE P + PGP PA
Sbjct: 609 PAGDEPAESPSETPGPRPAGPAGDEPAESP-------SETPGPSPA 647
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 74.3 bits (181), Expect = 2e-13
Identities = 77/258 (29%), Positives = 91/258 (35%), Gaps = 40/258 (15%)
Query: 202 DEPQKPEDKGDPEGPEAGGAEQKAA-SGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGR 260
++PQ P G P+GP G + ++ S + QGPP G + +G PP G+
Sbjct: 87 NKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGP--------PPPPGK 138
Query: 261 LDALQGPPRTGGPSPAGPAAARLAEDPAP---------HYPAGAPAPGPHPAAGEVPPG- 310
QGPP GG P GP + P P P G P GP P G P G
Sbjct: 139 P---QGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKP-QGPPPQGGNQPQGP 194
Query: 311 PGGPSVIHSPP---------PPPPPAVLAKPKLWSLAEIATSSDKVKDGG----GGNEGS 357
P P PP PPPP P + S K G GGN+
Sbjct: 195 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQ 254
Query: 358 PCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGS 417
PP PG G G P P P Q P P G SR G G
Sbjct: 255 GPPPPPGKPQGPPPQGGNKPQGPPPPGKP--QGPPPQGGSKSRSSRSPPGKPQGPPPQG- 311
Query: 418 FGHLHGHPGPGPGPTTGP 435
G+ P P PG GP
Sbjct: 312 -GNQPQGPPPPPGKPQGP 328
Score = 72.8 bits (177), Expect = 7e-13
Identities = 68/224 (30%), Positives = 81/224 (36%), Gaps = 39/224 (17%)
Query: 202 DEPQKPEDKGDPEGPEAGGAEQKAASGCE--RLQGPPTPAGKETEGSLSDSDFKEPPSEG 259
++PQ P G P+GP G + +S + QGPP G + +G PP G
Sbjct: 148 NKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGP--------PPPPG 199
Query: 260 RLDALQGPPRTGGPSPAGPAAARLAEDPAP---------HYPAGAPAPGPHPAAGEVPPG 310
+ QGPP GG P GP + P P P G P GP P G P G
Sbjct: 200 KP---QGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKP-QGPPPQGGNQPQG 255
Query: 311 -PGGPSVIHSPP---------PPPPPAVLAKPKLWSLAEIATSSDKVKDGG----GGNEG 356
P P PP PPPP P ++ S K G GGN+
Sbjct: 256 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQP 315
Query: 357 SPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSR 400
PP PG G G P P P Q P P G SR
Sbjct: 316 QGPPPPPGKPQGPPPQGGNKPQGPPPPGKP--QGPPPQGGSKSR 357
Score = 72.8 bits (177), Expect = 7e-13
Identities = 70/218 (32%), Positives = 80/218 (36%), Gaps = 45/218 (20%)
Query: 202 DEPQKPEDKGDPEGPEAGG--AEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEG 259
++PQ P G P+GP G Q A S + QGPP G + +G PP G
Sbjct: 210 NKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGP--------PPPPG 261
Query: 260 RLDALQGPPRTGGPSPAGPAAARLAEDPAP---------HYPAGAPAPGPHPAAGEVPPG 310
+ QGPP GG P GP + P P P G P GP P G P G
Sbjct: 262 KP---QGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKP-QGPPPQGGNQPQG 317
Query: 311 -PGGPSVIHSPPP--------PPPPAVL--AKPKLWSLAEIATSSDKVKDG----GGGNE 355
P P PPP PPPP P+ S + A S G G N
Sbjct: 318 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNP 377
Query: 356 GSPCPPCPG-------PIAGQALGGSRASPAPAPSRSP 386
P PP G P AGQ G R PSR P
Sbjct: 378 QGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 415
Score = 66.6 bits (161), Expect = 5e-11
Identities = 77/277 (27%), Positives = 98/277 (35%), Gaps = 50/277 (18%)
Query: 182 RNRSEDEEEEENIDLEKNDE--------DEPQ-KPEDKGDPEGP--EAGGAEQKAASGCE 230
+N +ED +EE+ L + ++PQ P G P+GP + G Q
Sbjct: 17 QNLNEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPG 76
Query: 231 RLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDAL--------QGPPRTGGPSPAGPAAAR 282
+ QGPP G + +G + PP +G QGPP GG P GP
Sbjct: 77 KPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGP---- 132
Query: 283 LAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIAT 342
P P P G P G + G PPG P PPP K + ++
Sbjct: 133 ---PPPPGKPQGPPPQGGNKPQGPPPPG---------KPQGPPPQGDNKSR-------SS 173
Query: 343 SSDKVKDGG----GGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVL 398
S K G GGN+ PP PG G G P P P Q P P G
Sbjct: 174 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP--QGPPPQGDNK 231
Query: 399 SRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGP 435
S+ G G G+ P P PG GP
Sbjct: 232 SQSARSPPGKPQGPPPQG--GNQPQGPPPPPGKPQGP 266
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 68.6 bits (166), Expect = 1e-11
Identities = 86/281 (30%), Positives = 100/281 (35%), Gaps = 51/281 (18%)
Query: 198 KNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPS 257
K ++ P K ++G P GP G K +G QGPP P G G D+ P
Sbjct: 584 KGNDGAPGKNGERGGPGGPGPQGPPGK--NGETGPQGPPGPTGPG--GDKGDTGPPGPQG 639
Query: 258 EGRLDALQGPP----RTGGPSPAGPAAARLAEDPAPHYPAGAP----------APGPHPA 303
L GPP + G P P G A A A P AGAP APG
Sbjct: 640 LQGLPGTGGPPGENGKPGEPGPKGDAGAPGA--PGGKGDAGAPGERGPPGLAGAPGLRGG 697
Query: 304 AGEVPPGPGGPSVIHSPPPPP----PPAVLAKP-KLWSLAEIATSSDKVKDGGGGNEGSP 358
AG PPGP G PP PP P + P + L DK + GG G +G P
Sbjct: 698 AG--PPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVP 755
Query: 359 CPPCP----GPI-----AGQ-------------ALGGSRASPAPAPSRSPSAQCPFPGGT 396
P GPI AGQ + G R SP P FPG
Sbjct: 756 GKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAP 815
Query: 397 VLS-RPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436
+ P PG G + G PG G GP PG
Sbjct: 816 GQNGEPGGKGERGAPGEKGEGGPPGVAGPPG-GSGPAGPPG 855
Score = 60.1 bits (144), Expect = 4e-09
Identities = 78/272 (28%), Positives = 94/272 (34%), Gaps = 56/272 (20%)
Query: 204 PQKPEDKGDPEGPEA--GGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRL 261
P P +G P GP+ G + + A+G +GPP P G + EP +G
Sbjct: 962 PGMPGPRGSP-GPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAG----EPGRDGNP 1016
Query: 262 DALQGPPRTGGP----------SPAGPAAARLAEDPAPHYPAG-----------APAPGP 300
+ P R G P SP P A P P PAG PA P
Sbjct: 1017 GSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAP 1076
Query: 301 HPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCP 360
PA PGP GP + E + K G GN G+P
Sbjct: 1077 GPAGSRGAPGPQGP----------------RGDKGETGERGAAGIKGHRGFPGNPGAPGS 1120
Query: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYT-----NY 415
P P AGQ G+ SP PA R P PG S P P +
Sbjct: 1121 PGP---AGQQ--GAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSE 1175
Query: 416 GSFGHLHGHPGPGPGPTTGPGSHFNGLNQTVL 447
GS GH G PGP PGP PG G+ +
Sbjct: 1176 GSPGH-PGQPGP-PGPPGAPGPCCGGVGAAAI 1205
Score = 58.2 bits (139), Expect = 2e-08
Identities = 79/294 (26%), Positives = 93/294 (31%), Gaps = 75/294 (25%)
Query: 197 EKNDEDEPQKPEDKGDPEGPEAGGAEQK-AASGCERLQGPPTPAGKETE----------- 244
E+ P DKG+P GP A G K G GPP PAG+ +
Sbjct: 730 ERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPG 789
Query: 245 -----GSLSDSDFKEPP---------------------------SEGRLDALQGPPRTGG 272
GS + PP EG + GPP GG
Sbjct: 790 IAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPP--GG 847
Query: 273 PSPAGPAAAR--LAEDPAPHYPAGAPAPG----PHPAAGEVPPGPGGPSVIHSPPPPPPP 326
PAGP + E +P P A PG P P PGP GPS PP P
Sbjct: 848 SGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGP 907
Query: 327 AVLAKPKLWSLAEIATSSDKVKDGGGGNEGSP----CPPCPGPIAGQALGGSRASPAPAP 382
A + S K G G +GSP P PGP+ + G+R P
Sbjct: 908 A----GNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPG 963
Query: 383 SRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436
P P P G G + L G GP PGP PG
Sbjct: 964 MPGPRGS-PGPQGV-------------KGESGKPGANGLSGERGP-PGPQGLPG 1002
Score = 51.2 bits (121), Expect = 2e-06
Identities = 79/262 (30%), Positives = 92/262 (35%), Gaps = 49/262 (18%)
Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE-TEGSLSDS----DFKEPPSE 258
P P G+P P G+ K GPP PAG GS S D +P +
Sbjct: 881 PGPPGSNGNPGPPGPSGSPGK--------DGPPGPAGNTGAPGSPGVSGPKGDAGQPGEK 932
Query: 259 GRLDALQGPPRTGGP-SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEV-PPGPGGPSV 316
G A QGPP GP AG AR P P P +PGP GE PG G S
Sbjct: 933 GSPGA-QGPPGAPGPLGIAGITGARGLAGP-PGMPGPRGSPGPQGVKGESGKPGANGLSG 990
Query: 317 IHSPPPPPPPAVLAKPKLWSLAEIATSSDKV--KDG--GG----------------GNEG 356
PP P LA + SD + +DG GG G+ G
Sbjct: 991 ERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPG 1050
Query: 357 SPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYG 416
P P P +G A PA AP + S P P G + G T
Sbjct: 1051 PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDK----------GETGER 1100
Query: 417 SFGHLHGHPG-PG-PGPTTGPG 436
+ GH G PG PG PG
Sbjct: 1101 GAAGIKGHRGFPGNPGAPGSPG 1122
Score = 50.4 bits (119), Expect = 3e-06
Identities = 69/242 (28%), Positives = 82/242 (33%), Gaps = 69/242 (28%)
Query: 203 EPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLD 262
EP K KG+P GP ++ +G P P K +G D EP + G
Sbjct: 433 EPGKNGAKGEP-GPRG----ERGEAGI-----PGVPGAKGEDGK--DGSPGEPGANGLPG 480
Query: 263 ALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAP-GPHPAAGEVPPG----PGGPSVI 317
A G PAGP + PA GAP P GP AAGE PG PGGP +
Sbjct: 481 AAGERGAPGFRGPAGPNGIPGEKGPAGE--RGAPGPAGPRGAAGE--PGRDGVPGGPGMR 536
Query: 318 HSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRAS 377
P P GG G++G P PP Q G
Sbjct: 537 GMPGSP--------------------------GGPGSDGKPGPP-----GSQGESGRPGP 565
Query: 378 PAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGP-GPGPTTGPG 436
P P+ R FPG N G+ G GP GPGP PG
Sbjct: 566 PGPSGPRGQPGVMGFPGPK----------------GNDGAPGKNGERGGPGGPGPQGPPG 609
Query: 437 SH 438
+
Sbjct: 610 KN 611
Score = 47.0 bits (110), Expect = 4e-05
Identities = 50/184 (27%), Positives = 63/184 (34%), Gaps = 27/184 (14%)
Query: 207 PEDKGDPEGPEAGGAE-QKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQ 265
P ++G P P A GA A G + GPP P G T G P ++G +
Sbjct: 305 PGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPG--TAGFPGS-----PGAKGEVGPAG 357
Query: 266 GPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPG---------PGGPSV 316
P G P G +P P AGA P P P G PG P +
Sbjct: 358 SPGSNGAPGQRG--------EPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGL 409
Query: 317 IHSPPPPPPPAVLAKPKL-WSLAEIATSSDKVKDGGGGNEG-SPCPPCPGPIAGQALGGS 374
+ + PP P P L E + K + G G G + P PG GS
Sbjct: 410 MGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGS 469
Query: 375 RASP 378
P
Sbjct: 470 PGEP 473
Score = 46.6 bits (109), Expect = 5e-05
Identities = 50/193 (25%), Positives = 62/193 (32%), Gaps = 34/193 (17%)
Query: 197 EKNDEDEPQKPEDKGDPEGP----EAGGAEQKAASGCERLQGPPTPAGKE-TEGSLSDSD 251
++ + P P G P P AG + + SG G P PAG G
Sbjct: 1033 DRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRG 1092
Query: 252 FKEPPSEGRLDALQG-------PPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAA 304
K E ++G P G P PAG A P P P G P
Sbjct: 1093 DKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGA--IGSPGPAGPRG-------PVG 1143
Query: 305 GEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPG 364
PPG G S P PP P ++ +G G+ G P PP P
Sbjct: 1144 PSGPPGKDGTSGHPGPIGPPGPR-------------GNRGERGSEGSPGHPGQPGPPGPP 1190
Query: 365 PIAGQALGGSRAS 377
G GG A+
Sbjct: 1191 GAPGPCCGGVGAA 1203
Score = 40.8 bits (94), Expect = 0.003
Identities = 62/237 (26%), Positives = 74/237 (31%), Gaps = 57/237 (24%)
Query: 234 GPPTPAGKETE-GSLSDSDFKEPPSEGRLDALQGPP-RTGGPSPAGPAAARLAEDPAPHY 291
GPP P G GS ++ PP E GPP G P+GP A + E P
Sbjct: 180 GPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGP-AGKDGESGRPGR 238
Query: 292 PAGAPAPGPHPAAGE--VPPGPGG---------------------------PSVIHSPPP 322
P PGP G +P PG P +P P
Sbjct: 239 PGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGP 298
Query: 323 PPP---PAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPA 379
P P +P L A + DG G++G P PP P AG G A
Sbjct: 299 MGPRGAPGERGRPGLPGAA-----GARGNDGARGSDGQPGPPGPPGTAGFP-GSPGAKGE 352
Query: 380 PAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436
P+ SP + AP G G PGP PG PG
Sbjct: 353 VGPAGSPGSN---------------GAPGQRGEPGPQGHAGAQGPPGP-PGINGSPG 393
Score = 40.4 bits (93), Expect = 0.004
Identities = 54/193 (27%), Positives = 63/193 (32%), Gaps = 16/193 (8%)
Query: 204 PQKPEDKGDPEGPEA--GGAEQKAASGCERLQGPPT---PAG----KETEGSLSDSDFKE 254
P P P GP G + + G L GPP PAG +G
Sbjct: 214 PPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNG 273
Query: 255 PPSEGRLDALQG----PPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAG-EVPP 309
E L+G P G P P GP A E P P A A G A G + P
Sbjct: 274 EKGETGAPGLKGENGLPGENGAPGPMGPRGAP-GERGRPGLPGAAGARGNDGARGSDGQP 332
Query: 310 GPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQ 369
GP GP P P P S + + G G+ G+ PP P I G
Sbjct: 333 GPPGPPGTAGFPGSPGAKGEVGPA-GSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGS 391
Query: 370 ALGGSRASPAPAP 382
G PA P
Sbjct: 392 PGGKGEMGPAGIP 404
Score = 36.2 bits (82), Expect = 0.068
Identities = 51/206 (24%), Positives = 58/206 (28%), Gaps = 47/206 (22%)
Query: 265 QGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGP------------- 311
QGP G P P G R + P P +PGP P GP
Sbjct: 105 QGPK--GDPGPPG-IPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVK 161
Query: 312 ---------GGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP- 361
G P P PP PP P S + G G G P PP
Sbjct: 162 SGVAVGGLAGYPGPAGPPGPPGPPGTSGHP--GSPGSPGYQGPPGEPGQAGPSGPPGPPG 219
Query: 362 CPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHL 421
GP G P R PG + P P +PG + F
Sbjct: 220 AIGPSGPAGKDGESGRPGRPGERG------LPGPPGIKGPA--GIPGFPGMKGHRGFDGR 271
Query: 422 HGHPG----PG-------PGPTTGPG 436
+G G PG PG PG
Sbjct: 272 NGEKGETGAPGLKGENGLPGENGAPG 297
Score = 33.5 bits (75), Expect = 0.44
Identities = 49/168 (29%), Positives = 56/168 (33%), Gaps = 19/168 (11%)
Query: 279 AAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAK----PKL 334
A R P P G P P P P PG P SP P PP + P+
Sbjct: 94 APTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPG---SPGSPGPPGICESCPTGPQN 150
Query: 335 WSLAEIATSSDKVKDG--GGGNEGSPCPP-CPGPIAGQALGGSRASPAPAPSRSPSAQCP 391
+S S VK G GG G P P PGP G SP + P +
Sbjct: 151 YS---PQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPG 207
Query: 392 FPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPG----PGPGPTTGP 435
G + P P P + G G G PG PGP GP
Sbjct: 208 QAGPSGPPGPPGAIGPSGPAGKD-GESGR-PGRPGERGLPGPPGIKGP 253
Score = 32.0 bits (71), Expect = 1.3
Identities = 45/165 (27%), Positives = 53/165 (32%), Gaps = 18/165 (10%)
Query: 273 PSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGG-PSVIHSPPPPPPPAVLAK 331
P+P P A P P P G P + PGP G P P P P
Sbjct: 75 PNPEIPFGECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGS 134
Query: 332 PKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCP 391
P + E + G SP +G A+GG P PA P P
Sbjct: 135 PGPPGICESCPT--------GPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGP----P 182
Query: 392 FPGGTVLSRPLYYTAPFYPGYTN-YGSFGHLHGHPGPGPGPTTGP 435
P GT + +P PGY G G PGP GP
Sbjct: 183 GPPGT----SGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGP 223
Score = 29.3 bits (64), Expect = 8.3
Identities = 30/100 (30%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE----TEGSLSDSDFKEPPSEGRLD 262
P P GP +G + SG GPP P G +EGS PP
Sbjct: 1135 PAGPRGPVGP-SGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPP------ 1187
Query: 263 ALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHP 302
GPP GP G AA +A AP G P
Sbjct: 1188 ---GPPGAPGPCCGGVGAAAIAGIGGEKAGGFAPYYGDEP 1224
>gi|56549694 enabled homolog isoform a [Homo sapiens]
Length = 591
Score = 67.8 bits (164), Expect = 2e-11
Identities = 52/176 (29%), Positives = 73/176 (41%), Gaps = 26/176 (14%)
Query: 168 RRRLKKENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPE----DKGDPEGPEAGGAEQ 223
+ RL+++ ++ R E E +E +D E+ + E ++ E ++ + E E EQ
Sbjct: 201 QERLERQERL-----ERQERLERQERLDRERQERQERERLERLERERQERERQEQLEREQ 255
Query: 224 KAASGCERLQGPPTPAGKET--EGSLSDSDFKEPPSEGRLDALQGPPRTG---------- 271
R+ PA ET L DS EP + + P + G
Sbjct: 256 LEWERERRISSAAAPASVETPLNSVLGDSSASEPGLQAASQPAETPSQQGIVLGPLAPPP 315
Query: 272 -GPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPP 326
P P GPA A +A P P G P P P P+ G PP P P PPPPPPP
Sbjct: 316 PPPLPPGPAQASVALPPPP----GPPPPPPLPSTGPPPPPPPPPLPNQVPPPPPPP 367
>gi|39930375 enabled homolog isoform b [Homo sapiens]
Length = 570
Score = 67.8 bits (164), Expect = 2e-11
Identities = 52/176 (29%), Positives = 73/176 (41%), Gaps = 26/176 (14%)
Query: 168 RRRLKKENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPE----DKGDPEGPEAGGAEQ 223
+ RL+++ ++ R E E +E +D E+ + E ++ E ++ + E E EQ
Sbjct: 201 QERLERQERL-----ERQERLERQERLDRERQERQERERLERLERERQERERQEQLEREQ 255
Query: 224 KAASGCERLQGPPTPAGKET--EGSLSDSDFKEPPSEGRLDALQGPPRTG---------- 271
R+ PA ET L DS EP + + P + G
Sbjct: 256 LEWERERRISSAAAPASVETPLNSVLGDSSASEPGLQAASQPAETPSQQGIVLGPLAPPP 315
Query: 272 -GPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPP 326
P P GPA A +A P P G P P P P+ G PP P P PPPPPPP
Sbjct: 316 PPPLPPGPAQASVALPPPP----GPPPPPPLPSTGPPPPPPPPPLPNQVPPPPPPP 367
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 67.8 bits (164), Expect = 2e-11
Identities = 78/264 (29%), Positives = 95/264 (35%), Gaps = 47/264 (17%)
Query: 182 RNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEA--GGAEQKAASGCERLQGPPTPA 239
+N +ED +EE+ L + P P+ P+GP G + G + QGPP P
Sbjct: 17 QNLNEDVSQEESPSLIAGNPQGPS-PQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 75
Query: 240 ---GKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAP 296
G +G S S + PP + QGPP GG P GP P P P G P
Sbjct: 76 KPQGPPPQGDKSRSP-RSPPGKP-----QGPPPQGGNQPQGP-------PPPPGKPQGPP 122
Query: 297 APGPHPAAGEVPPG-PGGP----SVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGG 351
G + G PPG P GP SP PP P+
Sbjct: 123 PQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQ------------------ 164
Query: 352 GGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPG 411
GGN+ PP PG G G + P P P Q P P G SR G
Sbjct: 165 GGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKP--QGPPPQGD-KSRSSQSPPGKPQG 221
Query: 412 YTNYGSFGHLHGHPGPGPGPTTGP 435
G G+ P P PG GP
Sbjct: 222 PPPQG--GNQPQGPPPPPGKPQGP 243
Score = 61.2 bits (147), Expect = 2e-09
Identities = 58/200 (29%), Positives = 65/200 (32%), Gaps = 37/200 (18%)
Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263
P+ P K P+ G Q + QGPP GK+ +G + PP +G
Sbjct: 151 PRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSR 210
Query: 264 L--------QGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPS 315
QGPP GG P GP P G P GP P G P GP
Sbjct: 211 SSQSPPGKPQGPPPQGGNQPQGPPP-----------PPGKP-QGPPPQGGNKPQGP---- 254
Query: 316 VIHSPPP--PPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPG-------PI 366
PPP P P K S G N P PP G P
Sbjct: 255 ----PPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPP 310
Query: 367 AGQALGGSRASPAPAPSRSP 386
AGQ G R PSR P
Sbjct: 311 AGQPQGPPRPPQGGRPSRPP 330
Score = 46.6 bits (109), Expect = 5e-05
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Query: 202 DEPQ-KPEDKGDPEGPEA-GGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEG 259
++PQ P G P+GP GG + + + QGPP G +++ + S + P +
Sbjct: 228 NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQ 287
Query: 260 RLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGP 311
+ QGPP G +P P A PAG P P P G P P
Sbjct: 288 EGNNPQGPPPPAGGNPQQPQAP----------PAGQPQGPPRPPQGGRPSRP 329
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 67.8 bits (164), Expect = 2e-11
Identities = 70/241 (29%), Positives = 79/241 (32%), Gaps = 31/241 (12%)
Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263
P P KG P P A K + PTP P A
Sbjct: 931 PASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPA 990
Query: 264 LQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSP--- 320
P GGP+ P A P P G+PA P P PP PS SP
Sbjct: 991 ATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAAT 1050
Query: 321 -----PPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPC---PGPIAGQALG 372
P P A L PK AT S K G+P PP P P G A
Sbjct: 1051 PLPKGAPTTPAATLPSPK----GGPATPSLK---------GAPTPPAATPPSPKGGPATP 1097
Query: 373 GSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPT 432
+ +P P P+A P P G L+ P + AP P T G L P P PT
Sbjct: 1098 SPKGAPMP-----PAATPPSPKGG-LATPPHKGAPTTPAATPPSPKGGL-ATPPPKGAPT 1150
Query: 433 T 433
T
Sbjct: 1151 T 1151
Score = 59.3 bits (142), Expect = 8e-09
Identities = 62/189 (32%), Positives = 68/189 (35%), Gaps = 29/189 (15%)
Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQG 266
P KG P P A K +G PTP PPS L
Sbjct: 1235 PSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAAT------------PPS--LKGGLAT 1280
Query: 267 PPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPP---P 323
PP G P+PA PA P GAP P PAA PP P G +PPP P
Sbjct: 1281 PPHKGAPNPAVVTPPSPKGGPATSPPKGAPTP---PAA--TPPSPKGSP--GTPPPKGAP 1333
Query: 324 PPPAVL-AKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAP 382
PPAV PK T S K GG S P P P A + G A P+P
Sbjct: 1334 TPPAVTPPSPKGTPTLPATTPSSK---GGPTTPSSKEGPTP-PAATPSHKGGPAMTPPSP 1389
Query: 383 SRSPSAQCP 391
R P+ P
Sbjct: 1390 KRGPAIPSP 1398
Score = 57.8 bits (138), Expect = 2e-08
Identities = 69/238 (28%), Positives = 84/238 (35%), Gaps = 22/238 (9%)
Query: 207 PEDKGDPEG-PEAGGAEQKAASGCERLQGPPT----PAGKETEGSLSDSDFKEPPSEGRL 261
P KG P P GA A+ +G P P G T + + K P+ L
Sbjct: 1017 PSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSL 1076
Query: 262 DALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPG----PHPAAG-EVPPGPGGPSV 316
PP PSP G PA P GAP P P P G PP G P+
Sbjct: 1077 KGAPTPPAATPPSPKG--------GPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTT 1128
Query: 317 IHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGG-SR 375
+ PP P + P + A + K G P P GG +
Sbjct: 1129 PAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLAT 1188
Query: 376 ASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTT 433
SP AP+ +P+A P P G L+ P AP P T G L P P PTT
Sbjct: 1189 PSPKGAPT-TPAATPPSPKGG-LATPSPKGAPTTPAATPPSPKGGL-ATPSPKGAPTT 1243
Score = 55.5 bits (132), Expect = 1e-07
Identities = 72/251 (28%), Positives = 86/251 (34%), Gaps = 32/251 (12%)
Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPT-PAGK--ETEGSLSDSDFKEPPSEGR 260
P P KG P P A K +G PT PA +G L+ K P+
Sbjct: 1094 PATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTT-- 1151
Query: 261 LDALQGPPRTGG---PSPAGPAAARLAEDPAPH------YPAGAP----APGPHPAAGEV 307
A P GG P P G A P+P P GAP A P P G
Sbjct: 1152 -PAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLA 1210
Query: 308 PPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGN---EGSPCPPCPG 364
P P G + PP P LA P ++ GG +G+P PP
Sbjct: 1211 TPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAAT 1270
Query: 365 PIA---GQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHL 421
P + G A + +P PA PS + GG S P AP P T G
Sbjct: 1271 PPSLKGGLATPPHKGAPNPAVVTPPSPK----GGPATSPP--KGAPTPPAATPPSPKGS- 1323
Query: 422 HGHPGPGPGPT 432
G P P PT
Sbjct: 1324 PGTPPPKGAPT 1334
Score = 54.3 bits (129), Expect = 2e-07
Identities = 71/255 (27%), Positives = 85/255 (33%), Gaps = 36/255 (14%)
Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPT-PAGK--ETEGSLSDSDFKEPPSEGRLDA 263
P KG P P A K +G PT PA +G L+ K P+ A
Sbjct: 1143 PPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTT---PA 1199
Query: 264 LQGPPRTGG---PSPAGPAAARLAEDPAPH------YPAGAP----APGPHPAAGEVPPG 310
P GG PSP G A P+P P GAP A P P G P
Sbjct: 1200 ATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPP 1259
Query: 311 PGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGN---EGSPCPPCPGPIA 367
P G + PP LA P A + GG +G+P PP P +
Sbjct: 1260 PKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPS 1319
Query: 368 GQALGGSRASPAPAPSRSPSAQC-PFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPG 426
+ GS +P P + +P A P P GT P P T G
Sbjct: 1320 PK---GSPGTPPPKGAPTPPAVTPPSPKGT----------PTLPATTPSSKGGPTTPSSK 1366
Query: 427 PGPGPTTGPGSHFNG 441
GP P SH G
Sbjct: 1367 EGPTPPAATPSHKGG 1381
Score = 43.5 bits (101), Expect = 4e-04
Identities = 59/249 (23%), Positives = 74/249 (29%), Gaps = 54/249 (21%)
Query: 234 GPPTPAGK-ETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYP 292
GP TP G + S ++ F S + P T P+P P A P P
Sbjct: 816 GPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPSAVTPLSP 875
Query: 293 AGAPAPG-----------PHPAAGEVPPGP----------GGPSVIHSPP---------- 321
G P P P G P P P + P
Sbjct: 876 KGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPS 935
Query: 322 ----PPPPPAVLAKPK--------LWSLAEIATSSDKVKDGGG--GNEGSPCPPC---PG 364
P PP A PK W+ A + K G +G+P PP P
Sbjct: 936 PKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPS 995
Query: 365 PIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGH 424
P G A + +P P P+ P P G+ + P A P T G
Sbjct: 996 PKGGPATPSPKGAPTP-----PAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAAT 1050
Query: 425 PGPGPGPTT 433
P P PTT
Sbjct: 1051 PLPKGAPTT 1059
Score = 40.4 bits (93), Expect = 0.004
Identities = 54/202 (26%), Positives = 74/202 (36%), Gaps = 30/202 (14%)
Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263
P P KGDP P K A P TP +E + S D PP+ +
Sbjct: 1393 PAIPSPKGDPTSPAVIPLSPKKA--------PATPVTREGAATPSKGDLT-PPAVTPVSL 1443
Query: 264 LQGPPRT---GGPS-------PAGPAAARLA--EDPAPHYPAGAPAPGPHPAAGEVPPGP 311
+ P + GGP+ P PA + E PAP A + +P PA P
Sbjct: 1444 KKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAP 1503
Query: 312 GGPSVIHSPPP--PPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPC---PGPI 366
P+VI S P P P+ P +A AT K + + PP P P
Sbjct: 1504 TLPAVIPSSPKEVPATPSSRRDP----IAPTATLLSKKTPATLAPKEALIPPAMTVPSPK 1559
Query: 367 AGQALGGSRASPAPAPSRSPSA 388
A+ + +PA S+ S+
Sbjct: 1560 KTPAIPTPKEAPATPSSKEASS 1581
Score = 40.0 bits (92), Expect = 0.005
Identities = 46/173 (26%), Positives = 60/173 (34%), Gaps = 27/173 (15%)
Query: 233 QGPPTPAGKETEG--SLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPH 290
+ P TP+ KE +++ S +K PS L PP PSP P+P
Sbjct: 1569 EAPATPSSKEASSPPAVTPSTYKGAPSPKELLI---PPAVTSPSPKEAPTPPAVTPPSPE 1625
Query: 291 YPAGAPAPGPHPAAGEVPP-----GPGGPSVIHS-------------PPPPPPPA---VL 329
PAP P + V P P P+ + P P A VL
Sbjct: 1626 KGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPTALKEVL 1685
Query: 330 AKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAP 382
P S I + K + SP P CP P A G ++ APAP
Sbjct: 1686 VAPAPESTPIITAPTRKGPQTKKSSATSP-PICPDPSAKNGSKGPLSTVAPAP 1737
Score = 38.1 bits (87), Expect = 0.018
Identities = 43/192 (22%), Positives = 52/192 (27%), Gaps = 20/192 (10%)
Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263
P KG P P A K + G +G PTP PPS
Sbjct: 1301 PATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVT------------PPSPKGTPT 1348
Query: 264 LQG--PPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPP 321
L P GGP+ P + G P P G P P G +
Sbjct: 1349 LPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVI 1408
Query: 322 PPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPA-- 379
P P A P A + D P P G A S+ P
Sbjct: 1409 PLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLP 1468
Query: 380 ----PAPSRSPS 387
P+P P+
Sbjct: 1469 AVTPPSPKEPPA 1480
Score = 32.3 bits (72), Expect = 0.99
Identities = 65/251 (25%), Positives = 77/251 (30%), Gaps = 49/251 (19%)
Query: 237 TPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTG-----GPSPAGPAAARLAEDPAPHY 291
T A EG++S + P EG L L P PSP A AP
Sbjct: 671 TTASPFLEGTVSLAPKNHPVKEGTLTTLPLVPTASENCPVAPSPQNTCAPLATLVLAPEI 730
Query: 292 PAGAPAPGPHPAAGEVPPG--------------PGGPSVIHSPPPPPPPAVLAKPK--LW 335
P P+P PA PPG P S P + A K L
Sbjct: 731 PKSVPSPSLPPAG--TPPGTKKVDGISHTSALAPVASSPKECPTEDSGASATASSKGTLT 788
Query: 336 SLAEI----------ATSSDKVKDGGG------GNEGSPCPPCPG---PIAGQALGGSRA 376
LA+ T K G GN SP P P + GS+
Sbjct: 789 YLADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKD 848
Query: 377 SPAPAPSRSPSAQ--CPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTG 434
SPA S +P + P P P T P P T S +L P P GP T
Sbjct: 849 SPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLP--PKETPTPSVVNL---PFPKEGPATP 903
Query: 435 PGSHFNGLNQT 445
L+ T
Sbjct: 904 APKQAPALSMT 914
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 67.0 bits (162), Expect = 4e-11
Identities = 74/270 (27%), Positives = 93/270 (34%), Gaps = 49/270 (18%)
Query: 198 KNDEDEPQKPEDKGDPEG---PEAG--GAEQKAASGCERLQGPPTPAGKETEGSLSDSDF 252
K + P +KG+P P+ G G QK A G +GPP P G+ G + F
Sbjct: 1165 KGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRP--GYKGEIGF 1222
Query: 253 KEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA--------------P 298
P ++ L+G G + G + P P P G P P
Sbjct: 1223 PGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRP 1282
Query: 299 GPHPAAG-EVPPGPGGPSVIHSPPPPPPPAVL--------AKPKLWSLAEIATSSDKVKD 349
GP G + PPGP G PP PP K + + ++ +
Sbjct: 1283 GPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEP 1342
Query: 350 GGGGNEGSPCPPCPGPIAGQALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPLYYTAPF 408
GGGG GS P PGP G R P P P P P G P
Sbjct: 1343 GGGGFFGSSLPGPPGP------PGPRGYPGIPGPKGESIRGQPGPPG-----------PQ 1385
Query: 409 YPGYTNYGSFGHLHGHPGPGPGPTTGPGSH 438
P Y G PGP PGP + PG H
Sbjct: 1386 GPPGIGYEGRQGPPGPPGP-PGPPSFPGPH 1414
Score = 57.0 bits (136), Expect = 4e-08
Identities = 77/251 (30%), Positives = 88/251 (35%), Gaps = 40/251 (15%)
Query: 212 DPEGPEAGGAEQKAASGCERLQGPPTPAG------KETEGSLSDSDFKEPPSEGRLDALQ 265
D EG GG + +A G GPP P G + ++ SD P + +
Sbjct: 885 DMEGSGFGG-DLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 943
Query: 266 GPPRTGG-PSPAGPAAAR-----------LAEDPAPHYPAGAPAPGPHPAAGEV----PP 309
GPP G P P GP L E AP + APGP A GE P
Sbjct: 944 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP 1003
Query: 310 GPGGPSVIHSPPPPPPPAVLA--------KPKLWSLAEIATSSDKVKDGGGGNEGSP-CP 360
GP GP PP PP P + A WS A A + G G +G P P
Sbjct: 1004 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSA-DGPQGPPGLPGLKGDPGVP 1062
Query: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420
PG G P P R A P G SR PG G G
Sbjct: 1063 GLPGAKGEVGADGVPGFPG-LPGREGIAGPQGPKGDRGSR----GEKGDPGKDGVGQPG- 1116
Query: 421 LHGHPGPGPGP 431
L G PGP PGP
Sbjct: 1117 LPGPPGP-PGP 1126
Score = 48.9 bits (115), Expect = 1e-05
Identities = 80/332 (24%), Positives = 112/332 (33%), Gaps = 82/332 (24%)
Query: 30 GPRTDELGRSSSGSAFSPYAGSTA-----------FTAPS-----PGYNSHLQYGADPAA 73
GP+ + + GS FSP G+ F P PGY + + P
Sbjct: 1172 GPKGE---KGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 1228
Query: 74 AAAAAFSSYVGSPYDHTPG--MAGSLGYHPYAAPLGSYPYGDPAYRKNATRDATATLKAW 131
G P D + G M G G P P P G P Y N +++
Sbjct: 1229 PGMNGLKGEKGEPGDASLGFGMRGMPG--PPGPPGPPGPPGTPVYDSNVFAESSRPGPPG 1286
Query: 132 LNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNRSEDEEEE 191
L ++ P P KG A+ + P + + E E
Sbjct: 1287 LPGNQGPPGP-KG----------------------AKGEVGPPGPPGQFPFDFLQLEAEM 1323
Query: 192 ENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSD 251
+ EK D + + ++G+P G G+ L GPP P G +
Sbjct: 1324 KG---EKGDRGDAGQKGERGEPGGGGFFGSS---------LPGPPGPPGPRGYPGI---- 1367
Query: 252 FKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA----PGPHPAAGEV 307
P +G ++++G P G P P GP P P G P PGPH V
Sbjct: 1368 ---PGPKG--ESIRGQP--GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISV 1420
Query: 308 PPGPGGPSVIHSPPPPPPPAVLAKP---KLWS 336
PGP GP P PP PP + +LW+
Sbjct: 1421 -PGPPGP-----PGPPGPPGTMGASSGVRLWA 1446
Score = 47.0 bits (110), Expect = 4e-05
Identities = 70/243 (28%), Positives = 78/243 (32%), Gaps = 63/243 (25%)
Query: 237 TPAGKETEGSLSDSDFKE--PPSEGRLD-----ALQGPPRTGGP-SPAGPAAARLAEDPA 288
TP G+ EG L + P GR L GPP P SP GPA L P
Sbjct: 743 TPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPG 802
Query: 289 PHYPAGAPAPGPHPAA-GEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKV 347
P P G P P GE PG P P P P ++ DK
Sbjct: 803 PQGPPGPPGRDGTPGRDGE----PGDPGEDGKPGDTGPQGFPGTP-----GDVGPKGDKG 853
Query: 348 KDGGG-----GNEGSPCPPCPG---------PIAG-------QALGGSRASPA-PAPSRS 385
G G G +G P PP P + G +AL G R P P P
Sbjct: 854 DPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGV 913
Query: 386 P------------SAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTT 433
P S+ P P G P PG F L G PGP PG
Sbjct: 914 PGLPGEPGRFGVNSSDVPGPAG----------LPGVPGREGPPGFPGLPGPPGP-PGREG 962
Query: 434 GPG 436
PG
Sbjct: 963 PPG 965
Score = 41.6 bits (96), Expect = 0.002
Identities = 68/239 (28%), Positives = 78/239 (32%), Gaps = 34/239 (14%)
Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSD-SDFKEPPSEGRLD 262
PQ P KGD G K G L GPP P G S D S P EGR
Sbjct: 1091 PQGP--KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR-- 1146
Query: 263 ALQGPPRTGGPSPAGPAAARLAE----DPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIH 318
P G P PAGP ++ P P G P P G + GP
Sbjct: 1147 ----PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGAL--GPAQKGAKG 1200
Query: 319 SPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALG-GSRAS 377
P PP +P EI + G G +G P +LG G R
Sbjct: 1201 EPGFRGPPGPYGRPGY--KGEIGFPGRPGRPGMNGLKGEKGEP-----GDASLGFGMRGM 1253
Query: 378 PAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436
P P P P P GT + + PG L G+ GP PGP G
Sbjct: 1254 PGPPGPPGP----PGPPGTPVYDSNVFAESSRPGPPG------LPGNQGP-PGPKGAKG 1301
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 67.0 bits (162), Expect = 4e-11
Identities = 74/270 (27%), Positives = 93/270 (34%), Gaps = 49/270 (18%)
Query: 198 KNDEDEPQKPEDKGDPEG---PEAG--GAEQKAASGCERLQGPPTPAGKETEGSLSDSDF 252
K + P +KG+P P+ G G QK A G +GPP P G+ G + F
Sbjct: 750 KGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRP--GYKGEIGF 807
Query: 253 KEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA--------------P 298
P ++ L+G G + G + P P P G P P
Sbjct: 808 PGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRP 867
Query: 299 GPHPAAG-EVPPGPGGPSVIHSPPPPPPPAVL--------AKPKLWSLAEIATSSDKVKD 349
GP G + PPGP G PP PP K + + ++ +
Sbjct: 868 GPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEP 927
Query: 350 GGGGNEGSPCPPCPGPIAGQALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPLYYTAPF 408
GGGG GS P PGP G R P P P P P G P
Sbjct: 928 GGGGFFGSSLPGPPGP------PGPRGYPGIPGPKGESIRGQPGPPG-----------PQ 970
Query: 409 YPGYTNYGSFGHLHGHPGPGPGPTTGPGSH 438
P Y G PGP PGP + PG H
Sbjct: 971 GPPGIGYEGRQGPPGPPGP-PGPPSFPGPH 999
Score = 57.0 bits (136), Expect = 4e-08
Identities = 77/251 (30%), Positives = 88/251 (35%), Gaps = 40/251 (15%)
Query: 212 DPEGPEAGGAEQKAASGCERLQGPPTPAG------KETEGSLSDSDFKEPPSEGRLDALQ 265
D EG GG + +A G GPP P G + ++ SD P + +
Sbjct: 470 DMEGSGFGG-DLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 528
Query: 266 GPPRTGG-PSPAGPAAAR-----------LAEDPAPHYPAGAPAPGPHPAAGEV----PP 309
GPP G P P GP L E AP + APGP A GE P
Sbjct: 529 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP 588
Query: 310 GPGGPSVIHSPPPPPPPAVLA--------KPKLWSLAEIATSSDKVKDGGGGNEGSP-CP 360
GP GP PP PP P + A WS A A + G G +G P P
Sbjct: 589 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSA-DGPQGPPGLPGLKGDPGVP 647
Query: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420
PG G P P R A P G SR PG G G
Sbjct: 648 GLPGAKGEVGADGVPGFPG-LPGREGIAGPQGPKGDRGSR----GEKGDPGKDGVGQPG- 701
Query: 421 LHGHPGPGPGP 431
L G PGP PGP
Sbjct: 702 LPGPPGP-PGP 711
Score = 48.9 bits (115), Expect = 1e-05
Identities = 80/332 (24%), Positives = 112/332 (33%), Gaps = 82/332 (24%)
Query: 30 GPRTDELGRSSSGSAFSPYAGSTA-----------FTAPS-----PGYNSHLQYGADPAA 73
GP+ + + GS FSP G+ F P PGY + + P
Sbjct: 757 GPKGE---KGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 813
Query: 74 AAAAAFSSYVGSPYDHTPG--MAGSLGYHPYAAPLGSYPYGDPAYRKNATRDATATLKAW 131
G P D + G M G G P P P G P Y N +++
Sbjct: 814 PGMNGLKGEKGEPGDASLGFGMRGMPG--PPGPPGPPGPPGTPVYDSNVFAESSRPGPPG 871
Query: 132 LNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNRSEDEEEE 191
L ++ P P KG A+ + P + + E E
Sbjct: 872 LPGNQGPPGP-KG----------------------AKGEVGPPGPPGQFPFDFLQLEAEM 908
Query: 192 ENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSD 251
+ EK D + + ++G+P G G+ L GPP P G +
Sbjct: 909 KG---EKGDRGDAGQKGERGEPGGGGFFGSS---------LPGPPGPPGPRGYPGI---- 952
Query: 252 FKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA----PGPHPAAGEV 307
P +G ++++G P G P P GP P P G P PGPH V
Sbjct: 953 ---PGPKG--ESIRGQP--GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISV 1005
Query: 308 PPGPGGPSVIHSPPPPPPPAVLAKP---KLWS 336
PGP GP P PP PP + +LW+
Sbjct: 1006 -PGPPGP-----PGPPGPPGTMGASSGVRLWA 1031
Score = 47.0 bits (110), Expect = 4e-05
Identities = 70/243 (28%), Positives = 78/243 (32%), Gaps = 63/243 (25%)
Query: 237 TPAGKETEGSLSDSDFKE--PPSEGRLD-----ALQGPPRTGGP-SPAGPAAARLAEDPA 288
TP G+ EG L + P GR L GPP P SP GPA L P
Sbjct: 328 TPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPG 387
Query: 289 PHYPAGAPAPGPHPAA-GEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKV 347
P P G P P GE PG P P P P ++ DK
Sbjct: 388 PQGPPGPPGRDGTPGRDGE----PGDPGEDGKPGDTGPQGFPGTP-----GDVGPKGDKG 438
Query: 348 KDGGG-----GNEGSPCPPCPG---------PIAG-------QALGGSRASPA-PAPSRS 385
G G G +G P PP P + G +AL G R P P P
Sbjct: 439 DPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGV 498
Query: 386 P------------SAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTT 433
P S+ P P G P PG F L G PGP PG
Sbjct: 499 PGLPGEPGRFGVNSSDVPGPAG----------LPGVPGREGPPGFPGLPGPPGP-PGREG 547
Query: 434 GPG 436
PG
Sbjct: 548 PPG 550
Score = 41.6 bits (96), Expect = 0.002
Identities = 68/239 (28%), Positives = 78/239 (32%), Gaps = 34/239 (14%)
Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSD-SDFKEPPSEGRLD 262
PQ P KGD G K G L GPP P G S D S P EGR
Sbjct: 676 PQGP--KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR-- 731
Query: 263 ALQGPPRTGGPSPAGPAAARLAE----DPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIH 318
P G P PAGP ++ P P G P P G + GP
Sbjct: 732 ----PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGAL--GPAQKGAKG 785
Query: 319 SPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALG-GSRAS 377
P PP +P EI + G G +G P +LG G R
Sbjct: 786 EPGFRGPPGPYGRPGY--KGEIGFPGRPGRPGMNGLKGEKGEP-----GDASLGFGMRGM 838
Query: 378 PAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436
P P P P P GT + + PG L G+ GP PGP G
Sbjct: 839 PGPPGPPGP----PGPPGTPVYDSNVFAESSRPGPPG------LPGNQGP-PGPKGAKG 886
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 67.0 bits (162), Expect = 4e-11
Identities = 74/270 (27%), Positives = 93/270 (34%), Gaps = 49/270 (18%)
Query: 198 KNDEDEPQKPEDKGDPEG---PEAG--GAEQKAASGCERLQGPPTPAGKETEGSLSDSDF 252
K + P +KG+P P+ G G QK A G +GPP P G+ G + F
Sbjct: 930 KGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRP--GYKGEIGF 987
Query: 253 KEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA--------------P 298
P ++ L+G G + G + P P P G P P
Sbjct: 988 PGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRP 1047
Query: 299 GPHPAAG-EVPPGPGGPSVIHSPPPPPPPAVL--------AKPKLWSLAEIATSSDKVKD 349
GP G + PPGP G PP PP K + + ++ +
Sbjct: 1048 GPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEP 1107
Query: 350 GGGGNEGSPCPPCPGPIAGQALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPLYYTAPF 408
GGGG GS P PGP G R P P P P P G P
Sbjct: 1108 GGGGFFGSSLPGPPGP------PGPRGYPGIPGPKGESIRGQPGPPG-----------PQ 1150
Query: 409 YPGYTNYGSFGHLHGHPGPGPGPTTGPGSH 438
P Y G PGP PGP + PG H
Sbjct: 1151 GPPGIGYEGRQGPPGPPGP-PGPPSFPGPH 1179
Score = 57.0 bits (136), Expect = 4e-08
Identities = 77/251 (30%), Positives = 88/251 (35%), Gaps = 40/251 (15%)
Query: 212 DPEGPEAGGAEQKAASGCERLQGPPTPAG------KETEGSLSDSDFKEPPSEGRLDALQ 265
D EG GG + +A G GPP P G + ++ SD P + +
Sbjct: 650 DMEGSGFGG-DLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 708
Query: 266 GPPRTGG-PSPAGPAAAR-----------LAEDPAPHYPAGAPAPGPHPAAGEV----PP 309
GPP G P P GP L E AP + APGP A GE P
Sbjct: 709 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP 768
Query: 310 GPGGPSVIHSPPPPPPPAVLA--------KPKLWSLAEIATSSDKVKDGGGGNEGSP-CP 360
GP GP PP PP P + A WS A A + G G +G P P
Sbjct: 769 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSA-DGPQGPPGLPGLKGDPGVP 827
Query: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420
PG G P P R A P G SR PG G G
Sbjct: 828 GLPGAKGEVGADGVPGFPG-LPGREGIAGPQGPKGDRGSR----GEKGDPGKDGVGQPG- 881
Query: 421 LHGHPGPGPGP 431
L G PGP PGP
Sbjct: 882 LPGPPGP-PGP 891
Score = 48.9 bits (115), Expect = 1e-05
Identities = 80/332 (24%), Positives = 112/332 (33%), Gaps = 82/332 (24%)
Query: 30 GPRTDELGRSSSGSAFSPYAGSTA-----------FTAPS-----PGYNSHLQYGADPAA 73
GP+ + + GS FSP G+ F P PGY + + P
Sbjct: 937 GPKGE---KGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 993
Query: 74 AAAAAFSSYVGSPYDHTPG--MAGSLGYHPYAAPLGSYPYGDPAYRKNATRDATATLKAW 131
G P D + G M G G P P P G P Y N +++
Sbjct: 994 PGMNGLKGEKGEPGDASLGFGMRGMPG--PPGPPGPPGPPGTPVYDSNVFAESSRPGPPG 1051
Query: 132 LNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNRSEDEEEE 191
L ++ P P KG A+ + P + + E E
Sbjct: 1052 LPGNQGPPGP-KG----------------------AKGEVGPPGPPGQFPFDFLQLEAEM 1088
Query: 192 ENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSD 251
+ EK D + + ++G+P G G+ L GPP P G +
Sbjct: 1089 KG---EKGDRGDAGQKGERGEPGGGGFFGSS---------LPGPPGPPGPRGYPGI---- 1132
Query: 252 FKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA----PGPHPAAGEV 307
P +G ++++G P G P P GP P P G P PGPH V
Sbjct: 1133 ---PGPKG--ESIRGQP--GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISV 1185
Query: 308 PPGPGGPSVIHSPPPPPPPAVLAKP---KLWS 336
PGP GP P PP PP + +LW+
Sbjct: 1186 -PGPPGP-----PGPPGPPGTMGASSGVRLWA 1211
Score = 47.0 bits (110), Expect = 4e-05
Identities = 70/243 (28%), Positives = 78/243 (32%), Gaps = 63/243 (25%)
Query: 237 TPAGKETEGSLSDSDFKE--PPSEGRLD-----ALQGPPRTGGP-SPAGPAAARLAEDPA 288
TP G+ EG L + P GR L GPP P SP GPA L P
Sbjct: 508 TPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPG 567
Query: 289 PHYPAGAPAPGPHPAA-GEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKV 347
P P G P P GE PG P P P P ++ DK
Sbjct: 568 PQGPPGPPGRDGTPGRDGE----PGDPGEDGKPGDTGPQGFPGTP-----GDVGPKGDKG 618
Query: 348 KDGGG-----GNEGSPCPPCPG---------PIAG-------QALGGSRASPA-PAPSRS 385
G G G +G P PP P + G +AL G R P P P
Sbjct: 619 DPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGV 678
Query: 386 P------------SAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTT 433
P S+ P P G P PG F L G PGP PG
Sbjct: 679 PGLPGEPGRFGVNSSDVPGPAG----------LPGVPGREGPPGFPGLPGPPGP-PGREG 727
Query: 434 GPG 436
PG
Sbjct: 728 PPG 730
Score = 41.6 bits (96), Expect = 0.002
Identities = 68/239 (28%), Positives = 78/239 (32%), Gaps = 34/239 (14%)
Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSD-SDFKEPPSEGRLD 262
PQ P KGD G K G L GPP P G S D S P EGR
Sbjct: 856 PQGP--KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR-- 911
Query: 263 ALQGPPRTGGPSPAGPAAARLAE----DPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIH 318
P G P PAGP ++ P P G P P G + GP
Sbjct: 912 ----PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGAL--GPAQKGAKG 965
Query: 319 SPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALG-GSRAS 377
P PP +P EI + G G +G P +LG G R
Sbjct: 966 EPGFRGPPGPYGRPGY--KGEIGFPGRPGRPGMNGLKGEKGEP-----GDASLGFGMRGM 1018
Query: 378 PAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436
P P P P P GT + + PG L G+ GP PGP G
Sbjct: 1019 PGPPGPPGP----PGPPGTPVYDSNVFAESSRPGPPG------LPGNQGP-PGPKGAKG 1066
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 65.5 bits (158), Expect = 1e-10
Identities = 60/212 (28%), Positives = 73/212 (34%), Gaps = 19/212 (8%)
Query: 207 PEDKGDPEG--PEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKE-PPSEGRLDA 263
P G PEG P+ G Q + +GPP G +++G E PP +G +
Sbjct: 93 PPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQS 152
Query: 264 LQGPPRTGGPSPAGPAAARLAEDPAPH--YPAGAP--------APGPHPAAGEVPPGPGG 313
PPR G P P ++ P PH P G P P P P E PP GG
Sbjct: 153 QGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGG 212
Query: 314 PSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGG----GGNEGSPCPPCPGPIAGQ 369
PPP P P K G GN+ PP P
Sbjct: 213 NQ--SQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPP 270
Query: 370 ALGGSRASPAPAPSRSPSAQCPFPGGTVLSRP 401
GG+ P P P+ P P P G RP
Sbjct: 271 PPGGNPQQPLPPPAGKPQGPPPPPQGGRPHRP 302
Score = 62.8 bits (151), Expect = 7e-10
Identities = 75/266 (28%), Positives = 92/266 (34%), Gaps = 51/266 (19%)
Query: 185 SEDEEEEENIDLEKNDEDEPQKPEDKGDPEG--PEAGGAEQKAASGCERLQGPPTPAGKE 242
+ED +EE+ + + E ++P+ P+ P G E + G + QGPP GK
Sbjct: 20 NEDVSQEESPSVISG-KPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKP 78
Query: 243 TEGSLSDSDFKEPPSEGRLDALQGP-PRTGGPSPAGPAAARLAEDPAPH--YPAGAP--- 296
EG PP +G + QGP PR G P P ++ P P P G P
Sbjct: 79 -EG---------PPPQGGNQS-QGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQG 127
Query: 297 -----APGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGG 351
P P P E PP GG S PPP P P
Sbjct: 128 GNQSQGPPPRPGKPEGPPPQGGN---QSQGPPPRPGKPEGP----------------PPQ 168
Query: 352 GGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPG 411
GGN+ PP PG G G S P P P GG P P PG
Sbjct: 169 GGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP-----PPRPG 223
Query: 412 YTN--YGSFGHLHGHPGPGPGPTTGP 435
G+ P P PG GP
Sbjct: 224 KPEGPPSQGGNKPQGPPPHPGKPQGP 249
Score = 41.2 bits (95), Expect = 0.002
Identities = 41/122 (33%), Positives = 46/122 (37%), Gaps = 34/122 (27%)
Query: 207 PEDKGDPEGP--EAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDAL 264
P G PEGP + G Q + QGPP G + + PP GR
Sbjct: 219 PPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQ---------RPPPPGR---P 266
Query: 265 QGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPP 324
QGPP GG + P P PAG P GP P PP G P H PP
Sbjct: 267 QGPPPPGGN----------PQQPLPP-PAGKP-QGPPP-----PPQGGRP---HRPPQGQ 306
Query: 325 PP 326
PP
Sbjct: 307 PP 308
Score = 30.0 bits (66), Expect = 4.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 202 DEPQKPEDKGDPEG--PEAGGAEQKAASGCERLQGPPTP 238
++PQ+P G P+G P G +Q + QGPP P
Sbjct: 255 NKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPP 293
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 64.7 bits (156), Expect = 2e-10
Identities = 75/292 (25%), Positives = 96/292 (32%), Gaps = 49/292 (16%)
Query: 185 SEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETE 244
SE E EE N + E E +P+ D + + +S + + T
Sbjct: 77 SESESEETNAPKKTKTEQELPRPQSPSDLDSLDGRSLNDDGSSDPRDIDQD----NRSTS 132
Query: 245 GSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGA--PAPGPHP 302
S+ E S+ QGP R P P P + + D P P + P P P
Sbjct: 133 PSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFPPSPQ-PPDSTPRQPEASFEPHPSVTP 191
Query: 303 AAGEVPPGPGGPSVIHSPPPPPPP----------AVLAKPKLWSLAEIATSSDKVKDGGG 352
P P + +PP PPP VL+ P + A SS GG
Sbjct: 192 TGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSGPPMGPKGGGAASSV-----GG 246
Query: 353 GNEGSPCPPCPGPIAGQALGGSRASP---------------APAPSRSPSAQCPFPGGTV 397
N G PP PI+ + G S A P AP P+ P P
Sbjct: 247 PNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPA 306
Query: 398 LSRPLYYTAPFYPGYTNYGSFGHLHG-----------HPGPGPGPTTGPGSH 438
L RPL + PG GHL PGP GPT P H
Sbjct: 307 L-RPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPH 357
Score = 58.9 bits (141), Expect = 1e-08
Identities = 76/258 (29%), Positives = 93/258 (36%), Gaps = 48/258 (18%)
Query: 211 GDPEGPEAGGAEQKAASGCERLQGPP--TPAGKETEGSLSDSDFKEPPSE---GRLDALQ 265
G P GP+ GGA Q PP TP + G+ K P + G L +
Sbjct: 230 GPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAP 289
Query: 266 GP---PRTGGPSPAGPAAARLAEDPAPHYPAGA-PAPG--PHPAA-----GEVPPGP-GG 313
P P P PA L A GA P PG P P A G +PPGP G
Sbjct: 290 PPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKG 349
Query: 314 PSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGG 373
P++ SP PP + A ++SS + S
Sbjct: 350 PTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSS---------------- 393
Query: 374 SRASPAPAPSRSPSAQCPFPGGTVLS---RPLYYTAPFYPGYTNYGS-------FGHL-- 421
S ASP PA PS FP T LS +P YT P P + +G L
Sbjct: 394 SSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLA 453
Query: 422 --HGHPGPGPGPTTGPGS 437
+ HPGP P P+TG S
Sbjct: 454 NSNAHPGPFP-PSTGAQS 470
Score = 38.9 bits (89), Expect = 0.011
Identities = 42/155 (27%), Positives = 54/155 (34%), Gaps = 34/155 (21%)
Query: 235 PPTPAGKETEGSLSD--SDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPA---- 288
PP P + +LS + P+ + + GPP G +P+ P A + A P
Sbjct: 602 PPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPS-PGAYKTATPPGYKPG 660
Query: 289 ----------PHYPAGAPAPGP------HPAAGEVPPGPGGPSVIHSPPPPP------PP 326
P Y +P GP P G P P GPS + S PPPP PP
Sbjct: 661 SPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASGPP 720
Query: 327 AVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP 361
+ K E T V SP PP
Sbjct: 721 LSATQIKQEPAEEYETPESPVPPA-----RSPSPP 750
Score = 34.3 bits (77), Expect = 0.26
Identities = 50/228 (21%), Positives = 72/228 (31%), Gaps = 23/228 (10%)
Query: 218 AGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAG 277
+ A ++S P PA + +L PP + Q P T P+
Sbjct: 380 SSSAAASSSSSSSSSSASPFPASQ----ALPSYPHSFPPPTSLSVSNQPPKYT---QPSL 432
Query: 278 PAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSL 337
P+ A ++ P P P G + G PP G S H PP
Sbjct: 433 PSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAH------PPVSTHHHHHQQQ 486
Query: 338 AEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAP-APSRSPSAQCPFPGGT 396
+ + + + G+ PP PG GGS P A S S + P+P G
Sbjct: 487 QQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGP 546
Query: 397 VLSRPLYY---------TAPFYPGYTNYGSFGHLHGHPGPGPGPTTGP 435
P + P +N S +P P P+ GP
Sbjct: 547 AHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGP 594
Score = 31.2 bits (69), Expect = 2.2
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Query: 266 GPPRTG-GP-SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGP-SVIHSPPP 322
G P G GP PAGP+ P+ P APA GP +A ++ P SP P
Sbjct: 688 GSPTVGPGPLPPAGPSGL-----PSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVP 742
Query: 323 P-----PPPAVLAKP 332
P PPP V+ P
Sbjct: 743 PARSPSPPPKVVDVP 757
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 64.7 bits (156), Expect = 2e-10
Identities = 75/292 (25%), Positives = 96/292 (32%), Gaps = 49/292 (16%)
Query: 185 SEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETE 244
SE E EE N + E E +P+ D + + +S + + T
Sbjct: 77 SESESEETNAPKKTKTEQELPRPQSPSDLDSLDGRSLNDDGSSDPRDIDQD----NRSTS 132
Query: 245 GSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGA--PAPGPHP 302
S+ E S+ QGP R P P P + + D P P + P P P
Sbjct: 133 PSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFPPSPQ-PPDSTPRQPEASFEPHPSVTP 191
Query: 303 AAGEVPPGPGGPSVIHSPPPPPPP----------AVLAKPKLWSLAEIATSSDKVKDGGG 352
P P + +PP PPP VL+ P + A SS GG
Sbjct: 192 TGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSGPPMGPKGGGAASSV-----GG 246
Query: 353 GNEGSPCPPCPGPIAGQALGGSRASP---------------APAPSRSPSAQCPFPGGTV 397
N G PP PI+ + G S A P AP P+ P P
Sbjct: 247 PNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPA 306
Query: 398 LSRPLYYTAPFYPGYTNYGSFGHLHG-----------HPGPGPGPTTGPGSH 438
L RPL + PG GHL PGP GPT P H
Sbjct: 307 L-RPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPH 357
Score = 58.9 bits (141), Expect = 1e-08
Identities = 76/258 (29%), Positives = 93/258 (36%), Gaps = 48/258 (18%)
Query: 211 GDPEGPEAGGAEQKAASGCERLQGPP--TPAGKETEGSLSDSDFKEPPSE---GRLDALQ 265
G P GP+ GGA Q PP TP + G+ K P + G L +
Sbjct: 230 GPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAP 289
Query: 266 GP---PRTGGPSPAGPAAARLAEDPAPHYPAGA-PAPG--PHPAA-----GEVPPGP-GG 313
P P P PA L A GA P PG P P A G +PPGP G
Sbjct: 290 PPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKG 349
Query: 314 PSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGG 373
P++ SP PP + A ++SS + S
Sbjct: 350 PTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSS---------------- 393
Query: 374 SRASPAPAPSRSPSAQCPFPGGTVLS---RPLYYTAPFYPGYTNYGS-------FGHL-- 421
S ASP PA PS FP T LS +P YT P P + +G L
Sbjct: 394 SSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLA 453
Query: 422 --HGHPGPGPGPTTGPGS 437
+ HPGP P P+TG S
Sbjct: 454 NSNAHPGPFP-PSTGAQS 470
Score = 38.9 bits (89), Expect = 0.011
Identities = 42/155 (27%), Positives = 54/155 (34%), Gaps = 34/155 (21%)
Query: 235 PPTPAGKETEGSLSD--SDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPA---- 288
PP P + +LS + P+ + + GPP G +P+ P A + A P
Sbjct: 602 PPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPS-PGAYKTATPPGYKPG 660
Query: 289 ----------PHYPAGAPAPGP------HPAAGEVPPGPGGPSVIHSPPPPP------PP 326
P Y +P GP P G P P GPS + S PPPP PP
Sbjct: 661 SPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASGPP 720
Query: 327 AVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP 361
+ K E T V SP PP
Sbjct: 721 LSATQIKQEPAEEYETPESPVPPA-----RSPSPP 750
Score = 34.3 bits (77), Expect = 0.26
Identities = 50/228 (21%), Positives = 72/228 (31%), Gaps = 23/228 (10%)
Query: 218 AGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAG 277
+ A ++S P PA + +L PP + Q P T P+
Sbjct: 380 SSSAAASSSSSSSSSSASPFPASQ----ALPSYPHSFPPPTSLSVSNQPPKYT---QPSL 432
Query: 278 PAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSL 337
P+ A ++ P P P G + G PP G S H PP
Sbjct: 433 PSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAH------PPVSTHHHHHQQQ 486
Query: 338 AEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAP-APSRSPSAQCPFPGGT 396
+ + + + G+ PP PG GGS P A S S + P+P G
Sbjct: 487 QQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGP 546
Query: 397 VLSRPLYY---------TAPFYPGYTNYGSFGHLHGHPGPGPGPTTGP 435
P + P +N S +P P P+ GP
Sbjct: 547 AHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGP 594
Score = 31.2 bits (69), Expect = 2.2
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Query: 266 GPPRTG-GP-SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGP-SVIHSPPP 322
G P G GP PAGP+ P+ P APA GP +A ++ P SP P
Sbjct: 688 GSPTVGPGPLPPAGPSGL-----PSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVP 742
Query: 323 P-----PPPAVLAKP 332
P PPP V+ P
Sbjct: 743 PARSPSPPPKVVDVP 757
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 63.9 bits (154), Expect = 3e-10
Identities = 68/242 (28%), Positives = 84/242 (34%), Gaps = 58/242 (23%)
Query: 204 PQKPEDKGDPEGPEAGGAEQ-----------KAASGCERLQGPPTPAGKE----TEGSLS 248
P P+ G P GP+ E K G +QGPP PAG+E G
Sbjct: 417 PSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPG 476
Query: 249 DSDFKEPPSEGRLDALQGPPRTGGPS-PAGPAAARLAEDPAPHYPAGAP----------- 296
+ PP E +G P G + P GPA R P P P G+P
Sbjct: 477 PTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGER--GSPGPAGPKGSPGEAGRPGEAGL 534
Query: 297 -----------APGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSD 345
+PGP G PPGP G P PP PP A+ + +
Sbjct: 535 PGAKGLTGSPGSPGPDGKTG--PPGPAGQD--GRPGPPGPPG--ARGQAGVMGFPGPKGA 588
Query: 346 KVKDGGGGNEGSPCPP-CPGPIAGQALGGSRASPAPA----------PSRSPSAQ-CPFP 393
+ G G G P PP GP G++ P PA P+ SP Q P P
Sbjct: 589 AGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGP 648
Query: 394 GG 395
G
Sbjct: 649 AG 650
Score = 62.4 bits (150), Expect = 9e-10
Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 55/280 (19%)
Query: 198 KNDED----EPQKPEDKGDPEGPEA-----------GGAEQKAASGCERLQGPPTPAGKE 242
KN +D +P +P ++G P GP+ G + SG + +G PAG +
Sbjct: 228 KNGDDGEAGKPGRPGERGPP-GPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPK 286
Query: 243 TE-GSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAAR-------LAEDPAPHYPAG 294
E GS ++ + G++ P G P GPA AR A P P PAG
Sbjct: 287 GEPGSPGENG-----APGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAG 341
Query: 295 APA-PGPHPAAGEVPP----GPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKD 349
P PG A GE P G GP + P PP PA A P A+ K +
Sbjct: 342 PPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGAD-GQPGAKGAN 400
Query: 350 GGGGNEGSP-CPPCPGPIAGQALG------GSRASPAPAPSRSPSAQCPFPGGTVLSRPL 402
G G G+P P GP Q G G+ P S+ + PG + P
Sbjct: 401 GAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGP- 459
Query: 403 YYTAPFYPGYTNYGSFGHLHGHPGP-----GPGPTTGPGS 437
PG G PGP PG GPGS
Sbjct: 460 -------PGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS 492
Score = 61.6 bits (148), Expect = 2e-09
Identities = 84/277 (30%), Positives = 96/277 (34%), Gaps = 68/277 (24%)
Query: 207 PEDKGD--PEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDAL 264
P DKG+ P GP AG + A G GPP PAG F PP
Sbjct: 778 PGDKGESGPSGP-AGPTGARGAPGDRGEPGPPGPAG-----------FAGPPGADGQPGA 825
Query: 265 QGPPRTGG-------PSPAGPAAARLAEDPAPHYPAGAP-APGPHPAAGEVPPG------ 310
+G P G P PAGPA P P GAP A G +AG PPG
Sbjct: 826 KGEPGDAGAKGDAGPPGPAGPAGP-----PGPIGNVGAPGAKGARGSAG--PPGATGFPG 878
Query: 311 ------PGGPSVIHSPPPPPPPA-------------VLAKP-KLWSLAEIATSSDKVKDG 350
P GPS PP PP PA +P ++ + +K G
Sbjct: 879 AAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPG 938
Query: 351 GGGNEGSPCPPCPGPIAGQ-------ALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPL 402
G G+P P P IAGQ G R P P PS P Q P G + P
Sbjct: 939 ADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGP-SGASGERGPP 997
Query: 403 YYTAPFYPGYTNYGSFGHLHGHPGP--GPGPTTGPGS 437
P PG G PG PG PG+
Sbjct: 998 GPMGP--PGLAGPPGESGREGAPGAEGSPGRDGSPGA 1032
Score = 53.5 bits (127), Expect = 4e-07
Identities = 82/284 (28%), Positives = 96/284 (33%), Gaps = 67/284 (23%)
Query: 197 EKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE-------TEGSLSD 249
E E P D G P GP +G ++ G +QGPP PAG +G+ D
Sbjct: 654 EAGKPGEQGVPGDLGAP-GP-SGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGD 711
Query: 250 SDFKEPPSEGRLDALQGPP----RTGGPSP------AGPAAA----------RLAEDPAP 289
+ P LQG P G P P AGP A L P
Sbjct: 712 AGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGP 771
Query: 290 HYPAGAPA----PGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSD 345
PAGAP GP AG P G G P PP PA A P
Sbjct: 772 PGPAGAPGDKGESGPSGPAG--PTGARGAPGDRGEPGPPGPAGFAGPP----GADGQPGA 825
Query: 346 KVKDGGGGNEGSPCPP-------CPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVL 398
K + G G +G PP PGPI G++ + S P FPG
Sbjct: 826 KGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARG---SAGPPGATGFPGAAGR 882
Query: 399 SRPLYYTAPFYPGYTNYGSFGHLHGHPGP-------GPGPTTGP 435
P PG + G+ G G PGP GP TGP
Sbjct: 883 VGP--------PGPS--GNAGP-PGPPGPAGKEGGKGPRGETGP 915
Score = 53.1 bits (126), Expect = 5e-07
Identities = 74/251 (29%), Positives = 86/251 (34%), Gaps = 41/251 (16%)
Query: 223 QKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPP----RTGGPSPAG- 277
Q+ G L GP GK+ G S + PP L GPP R G P G
Sbjct: 966 QRGERGFPGLPGPSGEPGKQ--GPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGS 1023
Query: 278 ------PAAARLAEDPAPHYPAGAP----APGPHPAAGEV----------PPGPGGPSVI 317
P A + P P GAP APGP AG+ P GP GP
Sbjct: 1024 PGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGA 1083
Query: 318 HSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRAS 377
P P P E D+ G G G PP P G+ G +
Sbjct: 1084 RGPAGPQGPR-------GDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQ--GPSGA 1134
Query: 378 PAPAPSRSPSAQCPFPGGTVLS-RPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436
PA R P PG L+ P P G T G G + G PGP PGP PG
Sbjct: 1135 SGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRT--GDAGPV-GPPGP-PGPPGPPG 1190
Query: 437 SHFNGLNQTVL 447
G + + L
Sbjct: 1191 PPSAGFDFSFL 1201
Score = 52.4 bits (124), Expect = 9e-07
Identities = 73/266 (27%), Positives = 87/266 (32%), Gaps = 56/266 (21%)
Query: 218 AGGAEQKAASGCERLQGPPTPAGKET-EGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPA 276
AG SG GPP PAGKE +G ++ P E GPP G P PA
Sbjct: 880 AGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGE------VGPP--GPPGPA 931
Query: 277 GPAAARLAEDPA--PHYPA-----------------------GAPAP-------GPHPAA 304
G + A+ PA P P G P P GP A+
Sbjct: 932 GEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGAS 991
Query: 305 GEV-PPGPGGPSVIHSPPPPP--PPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSP-CP 360
GE PPGP GP + PP A A+ D+ + G G G+P P
Sbjct: 992 GERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAP 1051
Query: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYP----GYTNYG 416
PGP+ G R PA P G P G +
Sbjct: 1052 GAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHR 1111
Query: 417 SFGHLHGHPGP-------GPGPTTGP 435
F L G PGP GP +GP
Sbjct: 1112 GFSGLQGPPGPPGSPGEQGPSGASGP 1137
Score = 48.5 bits (114), Expect = 1e-05
Identities = 78/273 (28%), Positives = 91/273 (33%), Gaps = 66/273 (24%)
Query: 214 EGPEAGGAEQKAASGCERLQGPPTPAGKETE----GSLSDSDFKEPPSEGRLDALQGPP- 268
+GP G + ASG +GPP P GK + G + PP L G
Sbjct: 202 QGPP-GEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAG 260
Query: 269 ---------------RTGGPSPAGPAA--ARLAEDPAPHY--PAGAP-------APGPHP 302
G PAGP E+ AP P G P APGP
Sbjct: 261 LPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAG 320
Query: 303 AAGE-------VPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNE 355
A G PPGP GP + PP P AV AK E + +G G
Sbjct: 321 ARGNDGATGAAGPPGPTGP----AGPPGFPGAVGAK------GEAGPQGPRGSEGPQGVR 370
Query: 356 GSPCPPCPGPIAGQA--------LGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAP 407
G P PP P AG A G A+ AP + +P FPG S P P
Sbjct: 371 GEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPG----FPGARGPSGPQGPGGP 426
Query: 408 FYPGYTN-----YGSFGHLHGHPGPGPGPTTGP 435
P + GS G PGP GP
Sbjct: 427 PGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGP 459
Score = 47.0 bits (110), Expect = 4e-05
Identities = 43/126 (34%), Positives = 47/126 (37%), Gaps = 27/126 (21%)
Query: 204 PQKPE-DKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLD 262
PQ P DKG E E G K G LQGPP P G E
Sbjct: 1089 PQGPRGDKG--ETGEQGDRGIKGHRGFSGLQGPPGPPGSPGE------------------ 1128
Query: 263 ALQGPPRTGGPS-PAGP--AAARLAEDPAPHYPAGAPAPGPHPAAGEVPP-GPGGPSVIH 318
QGP GP+ P GP +A +D P PGP G+ P GP GP
Sbjct: 1129 --QGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPP 1186
Query: 319 SPPPPP 324
PP PP
Sbjct: 1187 GPPGPP 1192
Score = 44.7 bits (104), Expect = 2e-04
Identities = 67/237 (28%), Positives = 80/237 (33%), Gaps = 48/237 (20%)
Query: 229 CERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPA 288
C+ + P E E D E P++ ++GP GP
Sbjct: 75 CDETKNCPGAEVPEGECCPVCPDGSESPTDQETTGVEGPKGDTGPR-------------G 121
Query: 289 PHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAV---LAKPKLWSLAEIATSSD 345
P PAG P P +P GP GP P PP PP + A + E +T
Sbjct: 122 PRGPAGPPGRDGIPGQPGLP-GPPGP-----PGPPGPPGLGGNFAPQLSYGYDEKSTGGI 175
Query: 346 KVKD--GGGGNEGSPCPP-CPGPIAGQ----------ALG--GSRASPAPAPSRSPSAQC 390
V G G G P PP PGP Q A G G R P P +
Sbjct: 176 SVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEA 235
Query: 391 PFPG--------GTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPG-PGP-GPTTGPGS 437
PG G +R L TA PG + F L G G GP GP PGS
Sbjct: 236 GKPGRPGERGPPGPQGARGLPGTAGL-PGMKGHRGFSGLDGAKGDAGPAGPKGEPGS 291
Score = 40.0 bits (92), Expect = 0.005
Identities = 47/171 (27%), Positives = 53/171 (30%), Gaps = 57/171 (33%)
Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE------------------------ 242
P KGD E G A A G GP PAGK
Sbjct: 1030 PGAKGDRG--ETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPA 1087
Query: 243 -------TEGSLSDSDFKEPPSEGRLDALQGPP-RTGGPSPAGPAAARLAEDP-APHYPA 293
+G + + LQGPP G P GP+ A P P A
Sbjct: 1088 GPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSA 1147
Query: 294 GAPA-------------PGPHPAAGEV----PPGPGGPSVIHSPPPPPPPA 327
GAP PGP G+ PPGP GP P PP PP+
Sbjct: 1148 GAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGP-----PGPPGPPS 1193
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 63.5 bits (153), Expect = 4e-10
Identities = 67/220 (30%), Positives = 82/220 (37%), Gaps = 54/220 (24%)
Query: 182 RNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEA--GGAEQKAASGCERLQGPPTPA 239
+N +ED +EE+ L + P P+ P+GP G + G + QGPP P
Sbjct: 17 QNLNEDVSQEESPSLIAGNPQGPS-PQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 75
Query: 240 ---GKETEGSLSDSDFKEP------PSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPH 290
G +G S S P P +G QGPP GG P GP P P
Sbjct: 76 KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKP--QGPPPQGGNKPQGP--------PPPG 125
Query: 291 YPAGAPAPGPHPA-AGEVPPG-PGGP--SVIHSPPPPPPPAVLAKPKLWSLAEIATSSDK 346
P G PA G + + PPG P GP ++P PPPPA
Sbjct: 126 KPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPA------------------- 166
Query: 347 VKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSP 386
GGN P P AGQ G R PSR P
Sbjct: 167 -----GGNPQQP----QAPPAGQPQGPPRPPQGGRPSRPP 197
Score = 33.9 bits (76), Expect = 0.34
Identities = 33/117 (28%), Positives = 40/117 (34%), Gaps = 19/117 (16%)
Query: 283 LAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPP-----PPPAVLAKPKLWSL 337
++++ +P AG P GP P G P GP PPPP PPP KP+
Sbjct: 23 VSQEESPSLIAGNPQ-GPSPQGGNKPQGP--------PPPPGKPQGPPPQGGNKPQ---- 69
Query: 338 AEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPG 394
+ G SP P P GG P P P P PG
Sbjct: 70 GPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPP-PG 125
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 62.8 bits (151), Expect = 7e-10
Identities = 82/270 (30%), Positives = 94/270 (34%), Gaps = 35/270 (12%)
Query: 198 KNDEDEPQKPEDKGDPEGPEAGGAEQK-AASGCERLQGPPTPAGKETE-GSLSDSDFKE- 254
K EP K +KG P P G K +G GP PAG+ E G+ S F+
Sbjct: 608 KGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGL 667
Query: 255 -----PPSEGRLDALQGPP-RTGGPSPAGPAAAR--LAEDPAP-----HYPAGAPAP--- 298
PP EG QG P G P GP R E +P P G P
Sbjct: 668 PGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGT 727
Query: 299 -GPHPAAGEV-PPGPGGPSVIHSPPPPPPPAVLAKPK--LWSLAEIATSSDKVKDGGGGN 354
GP A+G PPG GP + P A +A PK + E KDGG G
Sbjct: 728 DGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGL 787
Query: 355 EGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYT- 413
G P PGP G P PA S G T P + P PG
Sbjct: 788 TGPIGP--PGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP--PGADG 843
Query: 414 ------NYGSFGHLHGHPGPGP-GPTTGPG 436
G G PGP GP+ PG
Sbjct: 844 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 873
Score = 62.4 bits (150), Expect = 9e-10
Identities = 79/251 (31%), Positives = 92/251 (36%), Gaps = 34/251 (13%)
Query: 209 DKGD--PEGPEAGGAEQKAASGCERLQGPPTPAG-KETEGSLSDSDFKEPPSEGRLDALQ 265
+KG+ P GP AG A + A G GPP PAG G+ K E
Sbjct: 802 EKGEVGPPGP-AGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 860
Query: 266 GPPRTGGPSPA----------GPAAARLAEDP--APHYPAGAPAPGPHPAAGEV-PPGPG 312
G P GPS A GP AR A+ P A +P A GP + G PPGP
Sbjct: 861 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 920
Query: 313 GPSVIHSPP----PPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAG 368
GPS P PP +P L A +K + G G G+ PP P +AG
Sbjct: 921 GPSGKDGPKGARGDSGPPGRAGEPGLQGPA--GPPGEKGEPGDDGPSGAEGPPGPQGLAG 978
Query: 369 Q-------ALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420
Q G R P P PS P Q PG + P P PG T
Sbjct: 979 QRGIVGLPGQRGERGFPGLPGPSGEPGKQ-GAPGASGDRGPPGPVGP--PGLTGPAGEPG 1035
Query: 421 LHGHPGPGPGP 431
G PG P
Sbjct: 1036 REGSPGADGPP 1046
Score = 48.1 bits (113), Expect = 2e-05
Identities = 42/137 (30%), Positives = 51/137 (37%), Gaps = 16/137 (11%)
Query: 206 KPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETE-GSLSDSDFKEPPSEGRLDAL 264
K D+G E G +G +QGP P G + E G + K L L
Sbjct: 1084 KQGDRG--EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGL 1141
Query: 265 QGPPRTGGPS----PAGPAAAR--------LAEDPAPHYPAGAPAPGPHPAAGEV-PPGP 311
GPP G PAGP+ R +D A P PGP +GE P GP
Sbjct: 1142 PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGP 1201
Query: 312 GGPSVIHSPPPPPPPAV 328
G PP PP P +
Sbjct: 1202 PGNPGPPGPPGPPGPGI 1218
Score = 45.1 bits (105), Expect = 1e-04
Identities = 61/213 (28%), Positives = 71/213 (33%), Gaps = 53/213 (24%)
Query: 209 DKGD--PEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQG 266
D+GD +GPE G + G GPP PAG E
Sbjct: 766 DRGDVGEKGPE-GAPGKDGGRGLTGPIGPPGPAGANGEKG-------------------- 804
Query: 267 PPRTGGPSPAGPAAARLAE-------DPAPHYPAGAPA----PGPHPAAGEV-------P 308
G P PAG A AR A P P AG P PG GE
Sbjct: 805 --EVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGA 862
Query: 309 PGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGG-----GNEGSPCPP-C 362
PGP GPS P P P + PK A+ + G G+ G+P PP
Sbjct: 863 PGPQGPS---GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP 919
Query: 363 PGPIAGQALGGSRASPAPAPSRSPSAQCPFPGG 395
PGP G+R P P R+ P G
Sbjct: 920 PGPSGKDGPKGARGDSGP-PGRAGEPGLQGPAG 951
Score = 43.9 bits (102), Expect = 3e-04
Identities = 66/252 (26%), Positives = 79/252 (31%), Gaps = 48/252 (19%)
Query: 209 DKGDPEGPEAGGAE-QKAASGCERLQGPPTPAGKETEG----SLSDSDFKEPPSEGRLDA 263
DKG+ P G + + G GPP P G G + F E +L
Sbjct: 139 DKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGV 198
Query: 264 LQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPP 323
+QGP G P GP PAG APGP G P PG P V P
Sbjct: 199 MQGP--MGPMGPRGPPG-----------PAG--APGPQGFQGN-PGEPGEPGVSGPMGPR 242
Query: 324 PPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSP----------CPPCPGPIAGQALGG 373
PP KP + K G G G P P PG + G
Sbjct: 243 GPPGPPGKP--------GDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPG 294
Query: 374 SRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTA-PFYPGYTNYGSFGHLHGHPG-PGP-- 429
+ A + + PG P+ P G T G+ G PGP
Sbjct: 295 LDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAG 354
Query: 430 -----GPTTGPG 436
GP GPG
Sbjct: 355 PPGPVGPAGGPG 366
Score = 41.6 bits (96), Expect = 0.002
Identities = 65/239 (27%), Positives = 78/239 (32%), Gaps = 39/239 (16%)
Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE-TEGSLSDSDFKEPPSEGRLDALQ 265
P P GP AGG A G + GP G E +G + P S G A
Sbjct: 352 PAGPPGPVGP-AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPG--TPGSPGPAGASG 408
Query: 266 GPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPP 325
P G P G A A AP +P PGP A G P GP G +
Sbjct: 409 NPGTDGIPGAKGSAGAPGIAG-APGFPGPRGPPGPQGATG--PLGPKGQT---------- 455
Query: 326 PAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP-CPGPIAGQALGGSRASP------ 378
E + K + G G G P PGP + G+R P
Sbjct: 456 ------------GEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 503
Query: 379 APAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPGS 437
P R FPG L+ P AP G + +G PG PG PG+
Sbjct: 504 GPPGERGAPGNRGFPGQDGLAGP--KGAPGERGPSGLAGPKGANGDPG-RPGEPGLPGA 559
Score = 39.7 bits (91), Expect = 0.006
Identities = 48/182 (26%), Positives = 57/182 (31%), Gaps = 28/182 (15%)
Query: 217 EAGGAEQKAASGCERLQGPPTPAGKETE-GSLSDSDFKEPPSEGRLDALQGP--PRTGGP 273
E G A G GP P GK+ + G P +QGP PR
Sbjct: 1060 ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKG 1119
Query: 274 SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPK 333
P L G P P P P+ + GP GPS PP P P+
Sbjct: 1120 EAGEPGERGLKGHRGFTGLQGLPGP-PGPSGDQGASGPAGPSGPRGPPGPVGPS------ 1172
Query: 334 LWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQ-ALGGSRASPAPAPSRSPSAQCPF 392
KDG G G PP P +G+ G +P P P P
Sbjct: 1173 -------------GKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP----PG 1215
Query: 393 PG 394
PG
Sbjct: 1216 PG 1217
Score = 38.9 bits (89), Expect = 0.011
Identities = 58/226 (25%), Positives = 72/226 (31%), Gaps = 67/226 (29%)
Query: 210 KGDP--EGPEAGGAEQKAASGCERLQGPP-TPAGKETEGSLSDSDFKEPPSEGRLDALQG 266
KG P GP +G A K A+G G P P + G D+ +G++
Sbjct: 527 KGAPGERGP-SGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAG-----PQGKVGPSGA 580
Query: 267 PPRTGGPSPAGPAAAR----LAEDPAPHYPAGAP----------APGPHPAAGEV----- 307
P G P P GP AR + P P G P APG G+
Sbjct: 581 PGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA 640
Query: 308 --PPGPGGPSVIHS-------------PPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGG 352
PPGP GP+ P PP PP KP
Sbjct: 641 AGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKP-------------------- 680
Query: 353 GNEGSP----CPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPG 394
G++G P P GP + G R SP + P PG
Sbjct: 681 GDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPG 726
Score = 37.7 bits (86), Expect = 0.023
Identities = 61/251 (24%), Positives = 76/251 (30%), Gaps = 39/251 (15%)
Query: 204 PQKPEDKGDPEGPEAGGAEQK-AASGCERLQGPPTPAGKETEGSLSDSDFKE-------P 255
P + ++G P P G K A G +GPP P G + +E P
Sbjct: 986 PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 1045
Query: 256 PSE----------GRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAG 305
P G A+ P G P GPA P G A
Sbjct: 1046 PGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG-----------PTGKQGDRGE-AGA 1093
Query: 306 EVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGP 365
+ P GP GP+ P P + E K G G +G P P PGP
Sbjct: 1094 QGPMGPSGPAGARGIQGPQGP----RGDKGEAGEPGERGLKGHRGFTGLQGLPGP--PGP 1147
Query: 366 IAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHP 425
Q G P P G + P+ P G + G+P
Sbjct: 1148 SGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGP--RGRSGETGPAGPPGNP 1205
Query: 426 GPGPGPTTGPG 436
GP PGP PG
Sbjct: 1206 GP-PGPPGPPG 1215
Score = 33.9 bits (76), Expect = 0.34
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 281 ARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEI 340
A + P P G P + PPGP GP+ P + E
Sbjct: 94 ATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGP----------RGDRGDKGEK 143
Query: 341 ATSSDKVKDGGGGNEGSPCPP-CPGPIAGQALGGSRAS 377
+ +DG G G+P PP PGP LGG+ A+
Sbjct: 144 GAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA 181
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 62.8 bits (151), Expect = 7e-10
Identities = 82/270 (30%), Positives = 94/270 (34%), Gaps = 35/270 (12%)
Query: 198 KNDEDEPQKPEDKGDPEGPEAGGAEQK-AASGCERLQGPPTPAGKETE-GSLSDSDFKE- 254
K EP K +KG P P G K +G GP PAG+ E G+ S F+
Sbjct: 539 KGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGL 598
Query: 255 -----PPSEGRLDALQGPP-RTGGPSPAGPAAAR--LAEDPAP-----HYPAGAPAP--- 298
PP EG QG P G P GP R E +P P G P
Sbjct: 599 PGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGT 658
Query: 299 -GPHPAAGEV-PPGPGGPSVIHSPPPPPPPAVLAKPK--LWSLAEIATSSDKVKDGGGGN 354
GP A+G PPG GP + P A +A PK + E KDGG G
Sbjct: 659 DGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGL 718
Query: 355 EGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYT- 413
G P PGP G P PA S G T P + P PG
Sbjct: 719 TGPIGP--PGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP--PGADG 774
Query: 414 ------NYGSFGHLHGHPGPGP-GPTTGPG 436
G G PGP GP+ PG
Sbjct: 775 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 804
Score = 62.4 bits (150), Expect = 9e-10
Identities = 79/251 (31%), Positives = 92/251 (36%), Gaps = 34/251 (13%)
Query: 209 DKGD--PEGPEAGGAEQKAASGCERLQGPPTPAG-KETEGSLSDSDFKEPPSEGRLDALQ 265
+KG+ P GP AG A + A G GPP PAG G+ K E
Sbjct: 733 EKGEVGPPGP-AGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 791
Query: 266 GPPRTGGPSPA----------GPAAARLAEDP--APHYPAGAPAPGPHPAAGEV-PPGPG 312
G P GPS A GP AR A+ P A +P A GP + G PPGP
Sbjct: 792 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 851
Query: 313 GPSVIHSPP----PPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAG 368
GPS P PP +P L A +K + G G G+ PP P +AG
Sbjct: 852 GPSGKDGPKGARGDSGPPGRAGEPGLQGPA--GPPGEKGEPGDDGPSGAEGPPGPQGLAG 909
Query: 369 Q-------ALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420
Q G R P P PS P Q PG + P P PG T
Sbjct: 910 QRGIVGLPGQRGERGFPGLPGPSGEPGKQ-GAPGASGDRGPPGPVGP--PGLTGPAGEPG 966
Query: 421 LHGHPGPGPGP 431
G PG P
Sbjct: 967 REGSPGADGPP 977
Score = 48.1 bits (113), Expect = 2e-05
Identities = 42/137 (30%), Positives = 51/137 (37%), Gaps = 16/137 (11%)
Query: 206 KPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETE-GSLSDSDFKEPPSEGRLDAL 264
K D+G E G +G +QGP P G + E G + K L L
Sbjct: 1015 KQGDRG--EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGL 1072
Query: 265 QGPPRTGGPS----PAGPAAAR--------LAEDPAPHYPAGAPAPGPHPAAGEV-PPGP 311
GPP G PAGP+ R +D A P PGP +GE P GP
Sbjct: 1073 PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGP 1132
Query: 312 GGPSVIHSPPPPPPPAV 328
G PP PP P +
Sbjct: 1133 PGNPGPPGPPGPPGPGI 1149
Score = 45.1 bits (105), Expect = 1e-04
Identities = 61/213 (28%), Positives = 71/213 (33%), Gaps = 53/213 (24%)
Query: 209 DKGD--PEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQG 266
D+GD +GPE G + G GPP PAG E
Sbjct: 697 DRGDVGEKGPE-GAPGKDGGRGLTGPIGPPGPAGANGEKG-------------------- 735
Query: 267 PPRTGGPSPAGPAAARLAE-------DPAPHYPAGAPA----PGPHPAAGEV-------P 308
G P PAG A AR A P P AG P PG GE
Sbjct: 736 --EVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGA 793
Query: 309 PGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGG-----GNEGSPCPP-C 362
PGP GPS P P P + PK A+ + G G+ G+P PP
Sbjct: 794 PGPQGPS---GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP 850
Query: 363 PGPIAGQALGGSRASPAPAPSRSPSAQCPFPGG 395
PGP G+R P P R+ P G
Sbjct: 851 PGPSGKDGPKGARGDSGP-PGRAGEPGLQGPAG 882
Score = 43.9 bits (102), Expect = 3e-04
Identities = 66/252 (26%), Positives = 79/252 (31%), Gaps = 48/252 (19%)
Query: 209 DKGDPEGPEAGGAE-QKAASGCERLQGPPTPAGKETEG----SLSDSDFKEPPSEGRLDA 263
DKG+ P G + + G GPP P G G + F E +L
Sbjct: 70 DKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGV 129
Query: 264 LQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPP 323
+QGP G P GP PAG APGP G P PG P V P
Sbjct: 130 MQGP--MGPMGPRGPPG-----------PAG--APGPQGFQGN-PGEPGEPGVSGPMGPR 173
Query: 324 PPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSP----------CPPCPGPIAGQALGG 373
PP KP + K G G G P P PG + G
Sbjct: 174 GPPGPPGKP--------GDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPG 225
Query: 374 SRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTA-PFYPGYTNYGSFGHLHGHPG-PGP-- 429
+ A + + PG P+ P G T G+ G PGP
Sbjct: 226 LDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAG 285
Query: 430 -----GPTTGPG 436
GP GPG
Sbjct: 286 PPGPVGPAGGPG 297
Score = 41.6 bits (96), Expect = 0.002
Identities = 65/239 (27%), Positives = 78/239 (32%), Gaps = 39/239 (16%)
Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE-TEGSLSDSDFKEPPSEGRLDALQ 265
P P GP AGG A G + GP G E +G + P S G A
Sbjct: 283 PAGPPGPVGP-AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPG--TPGSPGPAGASG 339
Query: 266 GPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPP 325
P G P G A A AP +P PGP A G P GP G +
Sbjct: 340 NPGTDGIPGAKGSAGAPGIAG-APGFPGPRGPPGPQGATG--PLGPKGQT---------- 386
Query: 326 PAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP-CPGPIAGQALGGSRASP------ 378
E + K + G G G P PGP + G+R P
Sbjct: 387 ------------GEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 434
Query: 379 APAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPGS 437
P R FPG L+ P AP G + +G PG PG PG+
Sbjct: 435 GPPGERGAPGNRGFPGQDGLAGP--KGAPGERGPSGLAGPKGANGDPG-RPGEPGLPGA 490
Score = 39.7 bits (91), Expect = 0.006
Identities = 48/182 (26%), Positives = 57/182 (31%), Gaps = 28/182 (15%)
Query: 217 EAGGAEQKAASGCERLQGPPTPAGKETE-GSLSDSDFKEPPSEGRLDALQGP--PRTGGP 273
E G A G GP P GK+ + G P +QGP PR
Sbjct: 991 ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKG 1050
Query: 274 SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPK 333
P L G P P P P+ + GP GPS PP P P+
Sbjct: 1051 EAGEPGERGLKGHRGFTGLQGLPGP-PGPSGDQGASGPAGPSGPRGPPGPVGPS------ 1103
Query: 334 LWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQ-ALGGSRASPAPAPSRSPSAQCPF 392
KDG G G PP P +G+ G +P P P P
Sbjct: 1104 -------------GKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP----PG 1146
Query: 393 PG 394
PG
Sbjct: 1147 PG 1148
Score = 38.9 bits (89), Expect = 0.011
Identities = 58/226 (25%), Positives = 72/226 (31%), Gaps = 67/226 (29%)
Query: 210 KGDP--EGPEAGGAEQKAASGCERLQGPP-TPAGKETEGSLSDSDFKEPPSEGRLDALQG 266
KG P GP +G A K A+G G P P + G D+ +G++
Sbjct: 458 KGAPGERGP-SGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAG-----PQGKVGPSGA 511
Query: 267 PPRTGGPSPAGPAAAR----LAEDPAPHYPAGAP----------APGPHPAAGEV----- 307
P G P P GP AR + P P G P APG G+
Sbjct: 512 PGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA 571
Query: 308 --PPGPGGPSVIHS-------------PPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGG 352
PPGP GP+ P PP PP KP
Sbjct: 572 AGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKP-------------------- 611
Query: 353 GNEGSP----CPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPG 394
G++G P P GP + G R SP + P PG
Sbjct: 612 GDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPG 657
Score = 37.7 bits (86), Expect = 0.023
Identities = 61/251 (24%), Positives = 76/251 (30%), Gaps = 39/251 (15%)
Query: 204 PQKPEDKGDPEGPEAGGAEQK-AASGCERLQGPPTPAGKETEGSLSDSDFKE-------P 255
P + ++G P P G K A G +GPP P G + +E P
Sbjct: 917 PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 976
Query: 256 PSE----------GRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAG 305
P G A+ P G P GPA P G A
Sbjct: 977 PGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG-----------PTGKQGDRGE-AGA 1024
Query: 306 EVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGP 365
+ P GP GP+ P P + E K G G +G P P PGP
Sbjct: 1025 QGPMGPSGPAGARGIQGPQGP----RGDKGEAGEPGERGLKGHRGFTGLQGLPGP--PGP 1078
Query: 366 IAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHP 425
Q G P P G + P+ P G + G+P
Sbjct: 1079 SGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGP--RGRSGETGPAGPPGNP 1136
Query: 426 GPGPGPTTGPG 436
GP PGP PG
Sbjct: 1137 GP-PGPPGPPG 1146
Score = 33.5 bits (75), Expect = 0.44
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 11/92 (11%)
Query: 287 PAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDK 346
P P G P + PPGP GP+ P + E +
Sbjct: 31 PGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGP----------RGDRGDKGEKGAPGPR 80
Query: 347 VKDGGGGNEGSPCPP-CPGPIAGQALGGSRAS 377
+DG G G+P PP PGP LGG+ A+
Sbjct: 81 GRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA 112
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 62.8 bits (151), Expect = 7e-10
Identities = 62/232 (26%), Positives = 81/232 (34%), Gaps = 27/232 (11%)
Query: 211 GDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRT 270
G P GP A +A+ G + +P + G + +Q PP
Sbjct: 187 GKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTV--IQTPPFV 244
Query: 271 GGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLA 330
G +P PAA PAP PA AP PP P P+ + PP P A
Sbjct: 245 GAAAPPAPAAPSPPAAPAPAAPAAAP-----------PPPPPAPATLARPPGHPAGPPTA 293
Query: 331 KPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGP--IAGQ-ALGGSRASPAP-----AP 382
P + + G G +P P GP ++GQ G + A+PAP +P
Sbjct: 294 AP------AVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESP 347
Query: 383 SRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTG 434
R A P S P A G T G+ P P PG TG
Sbjct: 348 KRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTG 399
Score = 57.0 bits (136), Expect = 4e-08
Identities = 61/180 (33%), Positives = 67/180 (37%), Gaps = 41/180 (22%)
Query: 274 SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPK 333
SPAG A A A PA P AP P P AG PG GGP PP P P V A P
Sbjct: 66 SPAGAAGAGPAA-PAEGAPGAAPEP---PPAGRARPGGGGPQR-PGPPSPRRPLVPAGP- 119
Query: 334 LWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFP 393
A + K++ G+ GS C P P A A G A PA P+A
Sbjct: 120 -------APPAAKLRPPPEGSAGS-CAPVPAA-AAVAAGPEPAPAGPAKPAGPAALAARA 170
Query: 394 GGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPGSHFNGLNQTVLNRADAL 453
G PG PGPGPGP GPG LN + AL
Sbjct: 171 GPG-------------PG-------------PGPGPGPGPGPGKPAGPGAAQTLNGSAAL 204
Score = 51.6 bits (122), Expect = 2e-06
Identities = 83/295 (28%), Positives = 102/295 (34%), Gaps = 69/295 (23%)
Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRL-D 262
P+ PE + G + +G GP PA EG+ + EPP GR
Sbjct: 45 PRTPEVRAAAAGALGNHVVSGSPAGAAGA-GPAAPA----EGAPGAAP--EPPPAGRARP 97
Query: 263 ALQGPPRTGGPSP------AGPA--AARLAEDP---------APHYPAGAPAPGPHPAAG 305
GP R G PSP AGPA AA+L P P A A P P PA
Sbjct: 98 GGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGP 157
Query: 306 EVPPGPG--------GPSVIHSPPPPPPPAVLAKP-----------KLWSLAEIATSSDK 346
P GP GP P P P P A P L S A +
Sbjct: 158 AKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSL 217
Query: 347 VKDGGGGNEGSPCPPCPG------PIAGQALGGSRASPAPAPSRSPSAQC-----PFPGG 395
V +G P P PG P G A + A+P+P + +P+A P P
Sbjct: 218 VNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAP 277
Query: 396 TVLSRPLYY------TAPFYP---GYTNYGSFGHLHGHPGPGPGPTTGPGSHFNG 441
L+RP + AP P N GS G P P P G + +G
Sbjct: 278 ATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAG-----AAPAPAPAAGGPAGVSG 327
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 62.4 bits (150), Expect = 9e-10
Identities = 85/283 (30%), Positives = 102/283 (36%), Gaps = 59/283 (20%)
Query: 204 PQKPEDKGD-----PEGP--EAGGAEQKAASGCERLQGPPTPAGKETE----------GS 246
P +P KG P GP E G + + G E +GPP G+ + G
Sbjct: 796 PGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGD 855
Query: 247 LSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYP-----------AGA 295
+ P E L LQGPP G P P GP + +D P +P G
Sbjct: 856 VGQDGAPGIPGEKGLPGLQGPP--GFPGPKGPPGHQ-GKDGRPGHPGQRGELGFQGQTGP 912
Query: 296 PAP----GPHPAAGEVPP-GPGGPSVIHSPPPPPPPAVLAKPKL----WSLAEIATSSDK 346
P P GP GEV P G GP P PP PP P L + E+
Sbjct: 913 PGPAGVLGPQGKTGEVGPLGERGP-----PGPPGPPGEQGLPGLEGREGAKGELGPPGPL 967
Query: 347 VKDGGGGNEGSPCPP-CPGPIAGQALGGSRASPAPAPSR-SPSAQCPF--PGGTVLSRPL 402
K+G G G P P PG L G + P P + SP + P GG L
Sbjct: 968 GKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQS 1027
Query: 403 YYTAPFYPGYTNYGSFGHLHGHPG-------PGP-GPTTGPGS 437
P P GS G G PG PGP GP PG+
Sbjct: 1028 GSEGPVGPA-GKKGSRGE-RGPPGPTGKDGIPGPLGPLGPPGA 1068
Score = 54.7 bits (130), Expect = 2e-07
Identities = 76/268 (28%), Positives = 91/268 (33%), Gaps = 46/268 (17%)
Query: 207 PEDKGDPEGPEAGGAEQ-----KAASGCERLQGPPTPAGKETEGSLSDSDFKEP------ 255
P + P GP EQ + G + GPP P GKE L F P
Sbjct: 930 PLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRG--FPGPKGGPGD 987
Query: 256 PSEGRLDALQGPP----RTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEV---- 307
P L +GPP G P GP L P + + GP AG+
Sbjct: 988 PGPTGLKGDKGPPGPVGANGSPGERGP----LGPAGGIGLPGQSGSEGPVGPAGKKGSRG 1043
Query: 308 ---PPGPGGPSVIHSP--PPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP- 361
PPGP G I P P PP A + ++ K G G+ G P P
Sbjct: 1044 ERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPG 1103
Query: 362 ------CPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPG---- 411
PGP G R P + F G V+ P P PG
Sbjct: 1104 IRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVG--VIGPPGLQGLPGPPGEKGE 1161
Query: 412 YTNYGSFGHLHGHPGP-GP-GPTTGPGS 437
+ GS G HG PGP GP GPT G+
Sbjct: 1162 VGDVGSMGP-HGAPGPRGPQGPTGSEGT 1188
Score = 47.0 bits (110), Expect = 4e-05
Identities = 64/229 (27%), Positives = 77/229 (33%), Gaps = 28/229 (12%)
Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE----TEGSLSDSDFKEPPSEGRLD 262
P +KGDP + GG ASG GPP G EG + K P
Sbjct: 1282 PGEKGDPG--DVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGP---- 1335
Query: 263 ALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEV-PPGPGGPSVIHSPP 321
GPP GP A R+ + P PG A G++ PPGP GPS +
Sbjct: 1336 --DGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLK 1393
Query: 322 PPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP-------CPGPIAGQALGGS 374
P K + + I + + G G G PP PGPI GS
Sbjct: 1394 GDTGPKG-EKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPI------GS 1446
Query: 375 RASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHG 423
P P P Q G P T P P G+ LHG
Sbjct: 1447 LGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAGPPGPP-GAPAELHG 1494
Score = 46.2 bits (108), Expect = 7e-05
Identities = 69/269 (25%), Positives = 84/269 (31%), Gaps = 53/269 (19%)
Query: 204 PQKPEDKGDPEGP--EAGGAEQKAASGCERLQG-------------PPTPAGKETEGSLS 248
PQ P P GP G + A G L G P P K G
Sbjct: 510 PQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFG 569
Query: 249 DSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHY---PAGAPAPGPHPAAG 305
PP E +GPP P G A +P P P G+P P P
Sbjct: 570 HVGQPGPPGEDGERGAEGPP-----GPTGQAG-----EPGPRGLLGPRGSPGPTGRPGVT 619
Query: 306 EVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSL----AEIATSSDKVKDGGGGNEGSP-CP 360
+ PG + P P PP L I T +K G GN G P P
Sbjct: 620 GIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEK---GPPGNPGIPGLP 676
Query: 361 PCPGPI---AGQALGGSRASPAPAPSRSPSAQCPFPG-----GTVLSRPLY-----YTAP 407
GP+ + G + + P S P +PG GT +R L
Sbjct: 677 GSDGPLGHPGHEGPTGEKGAQGPPGSAGPPG---YPGPRGVKGTSGNRGLQGEKGEKGED 733
Query: 408 FYPGYTNYGSFGHLHGHPG-PGPGPTTGP 435
+PG+ G PG PGP GP
Sbjct: 734 GFPGFKGDVGLKGDQGKPGAPGPRGEDGP 762
Score = 42.4 bits (98), Expect = 0.001
Identities = 48/182 (26%), Positives = 61/182 (33%), Gaps = 43/182 (23%)
Query: 172 KKENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKP---------------------EDK 210
+K+NK WT + E + + D+ K + P P E
Sbjct: 264 RKKNKEIWTSSPPPDSAENQTSTDIPKTETPAPNLPPTPTPLVVTSTVTTGLNATILERS 323
Query: 211 GDPE-GPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFK--EPPSEGRLDALQGP 267
DP+ G E G E KAA E E + S DF+ E PS + G
Sbjct: 324 LDPDSGTELGTLETKAAREDE-----------EGDDSTMGPDFRAAEYPSRTQFQIFPGA 372
Query: 268 PRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPA 327
G PA + + APGP G P GP GP P PP PA
Sbjct: 373 GEKGAKGE--PAVIEKGQQ----FEGPPGAPGPQGVVG--PSGPPGPPGFPGDPGPPGPA 424
Query: 328 VL 329
L
Sbjct: 425 GL 426
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 61.6 bits (148), Expect = 2e-09
Identities = 74/265 (27%), Positives = 97/265 (36%), Gaps = 45/265 (16%)
Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263
P P+ P+GP G + G +QGPP P G +G + P S+G L
Sbjct: 722 PPGPQGHLGPQGPP-GTQGMQGPPGPRGMQGPPHPHG--IQGGPGSQGIQGPVSQGPLMG 778
Query: 264 LQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAP----GPHPAAGEVPPGPG---GPSV 316
L PR G P GP R + PAP P GPHP G + GP GP
Sbjct: 779 LN--PR-GMQGPPGP---RENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQE 832
Query: 317 IHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRA 376
I PPP + P + S + G +GS PP G + G +
Sbjct: 833 IRGMQGPPPQGSMLGPPQELRGPPGSQSQQ-----GPPQGSLGPPPQGGMQGPPGPQGQQ 887
Query: 377 SPA--PAPSRSP-------------SAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHL 421
+PA P PS+ P + PF + P P PG G+ G +
Sbjct: 888 NPARGPHPSQGPIPFQQQKTPLLGDGPRAPFNQEGQSTGP----PPLIPGLGQQGAQGRI 943
Query: 422 HG-----HPGPGPGPTTGPGSHFNG 441
PGP G + GP +H G
Sbjct: 944 PPLNPGQGPGPNKGDSRGPPNHHMG 968
Score = 61.2 bits (147), Expect = 2e-09
Identities = 69/261 (26%), Positives = 91/261 (34%), Gaps = 57/261 (21%)
Query: 204 PQKPEDKGDPEGP--EAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRL 261
P P+ + P+GP GG + G + QGPP +G D P
Sbjct: 628 PPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPP-------QGLPRPQDMHGP------ 674
Query: 262 DALQGPPRTGGP-SPAGPAAARLAEDPAPHY-PAGAPAPGPHPAAGEVPPGPGGPSVIHS 319
+Q P GP P GP + + P H P G P P H + PPGP G
Sbjct: 675 QGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGH-IGPQGPPGPQGHLGPQG 733
Query: 320 PP-------PPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALG 372
PP PP P + P + GG G++G P GP+ G
Sbjct: 734 PPGTQGMQGPPGPRGMQGPPHPHGI-----------QGGPGSQGIQGPVSQGPLMGLNPR 782
Query: 373 GSRASPAPAPSRSPSAQCPFPGGTVLSR-PLYYTAPFYPGYTNYGSFGH----------L 421
G + P P ++ P+ P G ++ P P PG G GH +
Sbjct: 783 GMQGPPGPRENQGPA-----PQGMIMGHPPQEMRGPHPPG----GLLGHGPQEMRGPQEI 833
Query: 422 HGHPGPGP-GPTTGPGSHFNG 441
G GP P G GP G
Sbjct: 834 RGMQGPPPQGSMLGPPQELRG 854
Score = 35.0 bits (79), Expect = 0.15
Identities = 48/180 (26%), Positives = 61/180 (33%), Gaps = 29/180 (16%)
Query: 280 AARLAEDPAPHYPAGAPAPGPHPAAGEVP------------PGPGGPSVIHSPPPPPPPA 327
A + E P +G P GP P G+ P P P + PP P
Sbjct: 565 AQKQVEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQG 624
Query: 328 VLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCP-GPIAG----QALGGSRASPA-PA 381
P ++ + GGGG +G P P GP G Q + G + P
Sbjct: 625 QFRPP--GPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPG 682
Query: 382 PSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGP----GPTTGPGS 437
P Q P PG S P + P P G GH+ PGP GP PG+
Sbjct: 683 PHGPLGPQGP-PGPQGSSGPQGHMGPQGPP----GPQGHIGPQGPPGPQGHLGPQGPPGT 737
Score = 32.7 bits (73), Expect = 0.75
Identities = 66/265 (24%), Positives = 85/265 (32%), Gaps = 49/265 (18%)
Query: 203 EPQKPEDKGDPEGPE----AGGAEQKAASGCE-RLQGPPTPAGK------ETEGSLSDSD 251
E ++P D+ P PE G E+ G R +G P G+ E G + D
Sbjct: 1078 EGRRPGDERFPRDPEDPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPGPEDFGPEENFD 1137
Query: 252 FKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGP 311
E + GR L+G R G G D P + G P G PGP
Sbjct: 1138 ASEEAARGR--DLRGRGR--GTPRGGRKGLLPTPDEFPRFEGGRK---PDSWDGNREPGP 1190
Query: 312 GGPSVIHSPPPPPPPAVLAKP---------KLWSLAEIATSSDKVKDGGGGNEGSPCPPC 362
G +P P PP P + +A + DG G +E
Sbjct: 1191 GHEHFRDTPRPDHPPHDGHSPASRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMEAP 1250
Query: 363 PGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLH 422
GP + G R P PA R P + R + GY FG
Sbjct: 1251 GGPSEDRG-GKGRGGPGPA-QRVPKS----------GRSSSLDGEHHDGYHRDEPFG--- 1295
Query: 423 GHPGPG-------PGPTTGPGSHFN 440
G PG G G G GS+ N
Sbjct: 1296 GPPGSGTPSRGGRSGSNWGRGSNMN 1320
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 59.7 bits (143), Expect = 6e-09
Identities = 76/270 (28%), Positives = 86/270 (31%), Gaps = 44/270 (16%)
Query: 198 KNDEDEPQKPEDKGDPEGPEAGGAE----QKAASGCERLQ--GPPTPAG----KETEGSL 247
+ D P P KG P G QK G L GPP P G K G
Sbjct: 1156 QGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLKGERGDP 1215
Query: 248 SDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAED------------PAPHYPAGA 295
P G+ P +G P PAG A R +D P P P GA
Sbjct: 1216 GSPGISPPGPRGKKGPPGPPGSSGPPGPAG-ATGRAPKDIPDPGPPGDQGPPGPDGPRGA 1274
Query: 296 PAPGPHPAAGEVPPGPGGPSVIHSPP----PPPPPAVLAKPKLWSLAEIATSSDKVKDGG 351
P P P + ++ G G + PP PP PP P KDG
Sbjct: 1275 PGPPGLPGSVDLLRGEPGDCGLPGPPGPPGPPGPPGYKGFP-----------GCDGKDGQ 1323
Query: 352 GGNEGSPCPP----CPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAP 407
G G P P PGP + L G P P + P P V P P
Sbjct: 1324 KGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRGE-PGPPADVDDCPRIPGLP 1382
Query: 408 FYPGYTNYGSFGHLHGHPGP-GPGPTTGPG 436
PG L G GP GPG PG
Sbjct: 1383 GAPGMRGPEGAMGLPGMRGPSGPGCKGEPG 1412
Score = 50.1 bits (118), Expect = 5e-06
Identities = 70/261 (26%), Positives = 87/261 (33%), Gaps = 66/261 (25%)
Query: 209 DKGDPEGP---EAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQ 265
++GDP P G +K G GPP PAG T + D PP + Q
Sbjct: 1211 ERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGA-TGRAPKDIPDPGPPGD------Q 1263
Query: 266 GPPRTGGPSPA-GPAAARLAED-----------PAPHYPAGAPAP--------------- 298
GPP GP A GP + D P P P G P P
Sbjct: 1264 GPPGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQ 1323
Query: 299 ----------GPHPAAGEV-------PPGPGGPSVIHSP--PPPPPPAVLAKPKLWSLAE 339
GPH G PPG GP+ + P P PP V P++ L
Sbjct: 1324 KGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLP- 1382
Query: 340 IATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSR------ASPAPAPSRSPSAQCPFP 393
+ +G G G P PG L G R SP P + + + +P
Sbjct: 1383 -GAPGMRGPEGAMGLPGMRGPSGPGCKGEPGLDGRRGVDGVPGSPGPPGRKGDTGEDGYP 1441
Query: 394 GGTVLSRPLYYTAP--FYPGY 412
GG P+ P F PGY
Sbjct: 1442 GGPGPPGPIGDPGPKGFGPGY 1462
Score = 45.4 bits (106), Expect = 1e-04
Identities = 67/258 (25%), Positives = 85/258 (32%), Gaps = 43/258 (16%)
Query: 200 DEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEG 259
D P + + GD P G + C + GPP P G L E G
Sbjct: 371 DPGFPGRYGETGDVGPPGPPGLLGRPGEACAGMIGPPGPQGFPGLPGLPG----EAGIPG 426
Query: 260 RLDALQGPP-RTGGPS-PAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEV-PPGPGGPS- 315
R D+ G P + G P P P L + G PGP G+V PPG GP
Sbjct: 427 RPDSAPGKPGKPGSPGLPGAPGLQGLPGSSVIYCSVG--NPGPQGIKGKVGPPGGRGPKG 484
Query: 316 -------VIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAG 368
P P PP P + D G G +G P P PG
Sbjct: 485 EKGNEGLCACEPGPMGPPGPPGLP-----GRQGSKGDLGLPGWLGTKGDPGP--PGAEGP 537
Query: 369 QALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTA-------PFYPGYT-NYGSFGH 420
L G + P ++ G V+SR + P +PG ++G GH
Sbjct: 538 PGLPGKHGASGPPGNKGAK------GDMVVSRVKGHKGERGPDGPPGFPGQPGSHGRDGH 591
Query: 421 LHGHPGPGPGPTTGPGSH 438
PGP PG H
Sbjct: 592 AGEKGDPGP-----PGDH 604
Score = 44.7 bits (104), Expect = 2e-04
Identities = 48/176 (27%), Positives = 58/176 (32%), Gaps = 16/176 (9%)
Query: 209 DKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPP 268
+KGDP P G + A G + GP P GK F PP E + G P
Sbjct: 594 EKGDPGPP---GDHEDATPGGKGFPGPLGPPGKAGPVGPPGLGFPGPPGERGHPGVPGHP 650
Query: 269 RTGGP----SPAGPAAARLAEDPAPHYPAGAPA-PGPHPAAG-EVPPGPGGPSVIHSPPP 322
GP G + P H P G PGP G + PG G P
Sbjct: 651 GVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPGPQGAPGLSGSDGHKGRPG 710
Query: 323 PPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASP 378
P A + P D G GG +GS PGP + G + P
Sbjct: 711 TPGTAEIPGPP-------GFRGDMGDPGFGGEKGSSPVGPPGPPGSPGVNGQKGIP 759
Score = 43.1 bits (100), Expect = 6e-04
Identities = 44/140 (31%), Positives = 53/140 (37%), Gaps = 21/140 (15%)
Query: 203 EPQKPEDKGD-PEGPEAGGAE-QKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGR 260
EP P D D P P GA + G L G P+G +G EP +GR
Sbjct: 1365 EPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSGPGCKG--------EPGLDGR 1416
Query: 261 LDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPS----V 316
+ G P G P P G R + YP G PGP G GPG V
Sbjct: 1417 R-GVDGVP--GSPGPPG----RKGDTGEDGYPGGPGPPGPIGDPGPKGFGPGYLGGFLLV 1469
Query: 317 IHSPPPPPPPAVLAKPKLWS 336
+HS P L P+LW+
Sbjct: 1470 LHSQTDQEPTCPLGMPRLWT 1489
Score = 38.5 bits (88), Expect = 0.014
Identities = 65/285 (22%), Positives = 81/285 (28%), Gaps = 59/285 (20%)
Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263
P P ++G P P G + G + +G G F PP
Sbjct: 635 PGPPGERGHPGVPGHPGV--RGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPG 692
Query: 264 LQGPPRTGGPS-----PAGPAAARLAEDPA-------PHY-------PAGAPAPGPHPAA 304
QG P G P P A + P P + P G P P P
Sbjct: 693 PQGAPGLSGSDGHKGRPGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPPGSPGV 752
Query: 305 GEVPPGPGGPSVIHSPPP---------------PPPPAVLAKPKLWSLAEIATSSDKVKD 349
PG P+ H PP P A+ + K ++
Sbjct: 753 NGQKGIPGDPAFGHLGPPGKRGLSGVPGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGRE 812
Query: 350 GGGGNEGSPCPP----------------CPGPIAGQALGGSRASPAPAPSRSPSAQCPFP 393
G G G P PP PG G + P P+ P
Sbjct: 813 GHAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLP 872
Query: 394 GGTVLSRPLYYTAPFYPGYTNYGSFGH--LHGHPGPGPGPTTGPG 436
G + RP + P PG G FG L G PGP GP PG
Sbjct: 873 G--LPGRPGAHGPPGLPGIP--GPFGDDGLPGPPGP-KGPRGLPG 912
Score = 35.4 bits (80), Expect = 0.12
Identities = 71/289 (24%), Positives = 88/289 (30%), Gaps = 71/289 (24%)
Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAG-KETEGSLSDSDFKEPPSEGRLD 262
P P ++G P GA K G + + G P G + +G++ P EG +
Sbjct: 914 PGFPGERGKPGAEGCPGA--KGEPGEKGMSGLPGDRGLRGAKGAIGP-----PGDEGEMA 966
Query: 263 ALQGPPRTGGPSPAG-------------PAAARLAEDPAPHYPAGAPAPGPHPAAGEVPP 309
+ G P P G P +P + P G P PP
Sbjct: 967 IISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEKGQPGPP 1026
Query: 310 GPGGP-------SVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPC--- 359
GP GP I P P P + I + G GN+G P
Sbjct: 1027 GPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGAR-----GPKGNKGDPASHF 1081
Query: 360 -----------PPCPGPIAG---------QALGGSRASPAPAPSRSPSAQCPFPGGTVLS 399
P CPG Q GS P P S P CP G
Sbjct: 1082 GPPGPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPG-CPGDHGMPGL 1140
Query: 400 RPLYYTAPFYPGYTNYGSFGHLHGHPG-PGP----GPTTGPGSHFNGLN 443
R PG L G PG PGP GP+ PG NGL+
Sbjct: 1141 RG-------QPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPG--LNGLH 1180
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 58.5 bits (140), Expect = 1e-08
Identities = 63/224 (28%), Positives = 81/224 (36%), Gaps = 51/224 (22%)
Query: 237 TPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAP 296
TP G E S PPS+ P P+ A AAA +A A YP G
Sbjct: 89 TPLGPEHMAQASTLGLS-PPSQAF------PAHPEAPAAAARAAALVAHPGAGSYPCGGG 141
Query: 297 APGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEG 356
+ G P+A P P P+ PPPPPPP +L+ T++ GGGG+ G
Sbjct: 142 SSGAQPSAPPPPAPPLPPTPSPPPPPPPPPPP-------ALSGYTTTN----SGGGGSSG 190
Query: 357 ----------------SPCPPCPG-PIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLS 399
+P G P+ G+ G+ + PAP P G +S
Sbjct: 191 KGHSRDFVLRRDLSATAPAAAMHGAPLGGEQRSGTGSPQHPAPP-------PHSAGMFIS 243
Query: 400 RPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPGSHFNGLN 443
Y P G F LH PG PG H + LN
Sbjct: 244 ASGTYAGP--DGSGGPALFPALHDTPG-------APGGHPHPLN 278
Score = 40.0 bits (92), Expect = 0.005
Identities = 46/159 (28%), Positives = 55/159 (34%), Gaps = 41/159 (25%)
Query: 273 PSPAGPAAARLAEDPAPHYPAGAPAPG--------------------PHPAAGEVPPGPG 312
P PA P A+ P H+P A G P AG PP P
Sbjct: 356 PPPAPPPPPAPAQHPHQHHPHLPGAAGAFLRYMRQPIKQELICKWIDPDELAGLPPPPPP 415
Query: 313 GPSVIHSPPPPPPPAVLAKP--KLWSLAEIATSSDKVKDGGGGNEGS------PCPPCPG 364
P PPPPPPPA AKP K + + V+ GG + S CP
Sbjct: 416 PP-----PPPPPPPAGGAKPCSKTFGTMHELVNHVTVEHVGGPEQSSHVCFWEDCPREGK 470
Query: 365 PIAG--QALGGSRASPAPAPSRSPSAQCPFPG-GTVLSR 400
P + + R P CPFPG G V +R
Sbjct: 471 PFKAKYKLINHIRVHTGEKP-----FPCPFPGCGKVFAR 504
Score = 33.9 bits (76), Expect = 0.34
Identities = 47/153 (30%), Positives = 57/153 (37%), Gaps = 40/153 (26%)
Query: 220 GAEQKAASGCERLQGPP------------TPAGKETEG--SLSDSDFKEPPSEG-RLDAL 264
G EQ++ +G + PP T AG + G +L + P + G L
Sbjct: 218 GGEQRSGTGSPQHPAPPPHSAGMFISASGTYAGPDGSGGPALFPALHDTPGAPGGHPHPL 277
Query: 265 QGPPRTGGPSPAGPAAARL---AEDP-AP-----HYPAGAPAPGPH-------------- 301
G R G + A AAA L AE P AP HY A A A
Sbjct: 278 NGQMRLGLAAAAAAAAAELYGRAEPPFAPRSGDAHYGAVAAAAAAALHGYGAVNLNLNLA 337
Query: 302 PAAGEVPPGPGGPSVIHSPP--PPPPPAVLAKP 332
AA GPG H+PP PPPPPA P
Sbjct: 338 AAAAAAAAGPGPHLQHHAPPPAPPPPPAPAQHP 370
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.131 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,636,123
Number of Sequences: 37866
Number of extensions: 2327506
Number of successful extensions: 35874
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 2018
Number of HSP's that attempted gapping in prelim test: 14572
Number of HSP's gapped (non-prelim): 12081
length of query: 483
length of database: 18,247,518
effective HSP length: 106
effective length of query: 377
effective length of database: 14,233,722
effective search space: 5366113194
effective search space used: 5366113194
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.