Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 139394646

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
         (483 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|139394646 iroquois homeobox protein 5 [Homo sapiens]              1018   0.0  
gi|197100900 iroquois homeobox 2 [Homo sapiens]                       372   e-103
gi|39930475 iroquois homeobox 2 [Homo sapiens]                        372   e-103
gi|226371735 iroquois homeobox 3 [Homo sapiens]                       222   5e-58
gi|7705555 iroquois homeobox 4 [Homo sapiens]                         204   1e-52
gi|51479177 iroquois homeobox protein 1 [Homo sapiens]                190   2e-48
gi|42544241 iroquois homeobox protein 6 [Homo sapiens]                176   6e-44
gi|178057337 mohawk homeobox [Homo sapiens]                            81   2e-15
gi|33286446 opioid growth factor receptor [Homo sapiens]               75   1e-13
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]     74   2e-13
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      69   1e-11
gi|56549694 enabled homolog isoform a [Homo sapiens]                   68   2e-11
gi|39930375 enabled homolog isoform b [Homo sapiens]                   68   2e-11
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre...    68   2e-11
gi|163965366 nascent polypeptide-associated complex alpha subuni...    68   2e-11
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    67   4e-11
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    67   4e-11
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    67   4e-11
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H...    65   1e-10
gi|55750053 atrophin-1 [Homo sapiens]                                  65   2e-10
gi|55750041 atrophin-1 [Homo sapiens]                                  65   2e-10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      64   3e-10
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre...    64   4e-10
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    63   7e-10
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    63   7e-10
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    63   7e-10
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    62   9e-10
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]               62   2e-09
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]         60   6e-09
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]    59   1e-08

>gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
          Length = 483

 Score = 1018 bits (2631), Expect = 0.0
 Identities = 483/483 (100%), Positives = 483/483 (100%)

Query: 1   MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPG 60
           MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPG
Sbjct: 1   MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPG 60

Query: 61  YNSHLQYGADPAAAAAAAFSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPYGDPAYRKNA 120
           YNSHLQYGADPAAAAAAAFSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPYGDPAYRKNA
Sbjct: 61  YNSHLQYGADPAAAAAAAFSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPYGDPAYRKNA 120

Query: 121 TRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWT 180
           TRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWT
Sbjct: 121 TRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWT 180

Query: 181 PRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAG 240
           PRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAG
Sbjct: 181 PRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAG 240

Query: 241 KETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGP 300
           KETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGP
Sbjct: 241 KETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGP 300

Query: 301 HPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCP 360
           HPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCP
Sbjct: 301 HPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCP 360

Query: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420
           PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH
Sbjct: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420

Query: 421 LHGHPGPGPGPTTGPGSHFNGLNQTVLNRADALAKDPKMLRSQSQLDLCKDSPYELKKGM 480
           LHGHPGPGPGPTTGPGSHFNGLNQTVLNRADALAKDPKMLRSQSQLDLCKDSPYELKKGM
Sbjct: 421 LHGHPGPGPGPTTGPGSHFNGLNQTVLNRADALAKDPKMLRSQSQLDLCKDSPYELKKGM 480

Query: 481 SDI 483
           SDI
Sbjct: 481 SDI 483


>gi|197100900 iroquois homeobox 2 [Homo sapiens]
          Length = 471

 Score =  372 bits (954), Expect = e-103
 Identities = 219/432 (50%), Positives = 255/432 (59%), Gaps = 50/432 (11%)

Query: 1   MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSP- 59
           MSYPQGYLYQ   SLALYSCPAY  S ++ PR++EL RS+SGSAFSPY GS AFTA +  
Sbjct: 1   MSYPQGYLYQAPGSLALYSCPAYGASALAAPRSEELARSASGSAFSPYPGSAAFTAQAAT 60

Query: 60  GYNSHLQYGADPAAAAAAAFSSYVGSPYD-HTPGMAGSLGYHPYAAPLGSYPYGDPAYRK 118
           G+ S LQY AD AAAAAA F SY+G+PYD HT GM G++ YHPY +    Y   DPAYRK
Sbjct: 61  GFGSPLQYSAD-AAAAAAGFPSYMGAPYDAHTTGMTGAISYHPYGSAAYPYQLNDPAYRK 119

Query: 119 NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 178
           NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT
Sbjct: 120 NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 179

Query: 179 WTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAG-------------GAEQKA 225
           W PRN+SEDE+E+E  D  ++ ++ P K ++  +    + G              AE   
Sbjct: 180 WAPRNKSEDEDEDEG-DATRSKDESPDKAQEGTETSAEDEGISLHVDSLTDHSCSAESDG 238

Query: 226 ASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAE 285
                R   P   +G E +    D +  E   E     L  PP+    SP     A L  
Sbjct: 239 EKLPCRAGDPLCESGSECKDKYDDLEDDEDDDEEGERGL-APPKPVTSSPLTGLEAPLLS 297

Query: 286 DPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSD 345
            P    P  AP  G     G             + P  PPPA  +KPKLWSLAEIATS  
Sbjct: 298 PP----PEAAPRGGRKTPQGS-----------RTSPGAPPPA--SKPKLWSLAEIATSDL 340

Query: 346 KVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYT 405
           K    G        P C  P       G  A+ APA + +P    P+P   +L RPLYYT
Sbjct: 341 KQPSLG--------PGCGPP-------GLPAAAAPASTGAPPGGSPYPASPLLGRPLYYT 385

Query: 406 APFYPGYTNYGS 417
           +PFY  YTNYG+
Sbjct: 386 SPFYGNYTNYGN 397


>gi|39930475 iroquois homeobox 2 [Homo sapiens]
          Length = 471

 Score =  372 bits (954), Expect = e-103
 Identities = 219/432 (50%), Positives = 255/432 (59%), Gaps = 50/432 (11%)

Query: 1   MSYPQGYLYQPSASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSP- 59
           MSYPQGYLYQ   SLALYSCPAY  S ++ PR++EL RS+SGSAFSPY GS AFTA +  
Sbjct: 1   MSYPQGYLYQAPGSLALYSCPAYGASALAAPRSEELARSASGSAFSPYPGSAAFTAQAAT 60

Query: 60  GYNSHLQYGADPAAAAAAAFSSYVGSPYD-HTPGMAGSLGYHPYAAPLGSYPYGDPAYRK 118
           G+ S LQY AD AAAAAA F SY+G+PYD HT GM G++ YHPY +    Y   DPAYRK
Sbjct: 61  GFGSPLQYSAD-AAAAAAGFPSYMGAPYDAHTTGMTGAISYHPYGSAAYPYQLNDPAYRK 119

Query: 119 NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 178
           NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT
Sbjct: 120 NATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 179

Query: 179 WTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAG-------------GAEQKA 225
           W PRN+SEDE+E+E  D  ++ ++ P K ++  +    + G              AE   
Sbjct: 180 WAPRNKSEDEDEDEG-DATRSKDESPDKAQEGTETSAEDEGISLHVDSLTDHSCSAESDG 238

Query: 226 ASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAE 285
                R   P   +G E +    D +  E   E     L  PP+    SP     A L  
Sbjct: 239 EKLPCRAGDPLCESGSECKDKYDDLEDDEDDDEEGERGL-APPKPVTSSPLTGLEAPLLS 297

Query: 286 DPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSD 345
            P    P  AP  G     G             + P  PPPA  +KPKLWSLAEIATS  
Sbjct: 298 PP----PEAAPRGGRKTPQGS-----------RTSPGAPPPA--SKPKLWSLAEIATSDL 340

Query: 346 KVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYT 405
           K    G        P C  P       G  A+ APA + +P    P+P   +L RPLYYT
Sbjct: 341 KQPSLG--------PGCGPP-------GLPAAAAPASTGAPPGGSPYPASPLLGRPLYYT 385

Query: 406 APFYPGYTNYGS 417
           +PFY  YTNYG+
Sbjct: 386 SPFYGNYTNYGN 397


>gi|226371735 iroquois homeobox 3 [Homo sapiens]
          Length = 501

 Score =  222 bits (566), Expect = 5e-58
 Identities = 160/402 (39%), Positives = 200/402 (49%), Gaps = 48/402 (11%)

Query: 46  SPYAGSTAFTAPSPGYNSHLQYGAD-PAAAAAAAFSSYVGSPYDHTPGMAGSLGY-HPYA 103
           +PYA + A  A + GY + L Y A+ P      A      SP    P  A +  + HP  
Sbjct: 59  APYAAAAA-AAAAQGYGAFLPYAAELPIFPQLGAQYELKDSPGVQHPAAAAAFPHPHPAF 117

Query: 104 APLGSYPYGDPAYRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTW 163
            P G Y +GDP+  KNATR++T+TLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTW
Sbjct: 118 YPYGQYQFGDPSRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTW 177

Query: 164 FANARRRLKKENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQ 223
           FANARRRLKKENKMTW PR+R+++E      + E+ DE+E ++       +G      E+
Sbjct: 178 FANARRRLKKENKMTWAPRSRTDEEGNAYGSEREEEDEEEDEE-------DGKRELELEE 230

Query: 224 KAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARL 283
           +   G E   G    A  + +  +   +     +E  L +L G  R  G    GP +   
Sbjct: 231 EELGGEEEDTGGEGLADDDEDEEIDLENLDGAATEPEL-SLAGAARRDGDLGLGPISDSK 289

Query: 284 AEDPAPH--------YPAGAPAPGPHPAAGEVPPGPGGP-SVIHSPPPPPPPAVLAKPKL 334
             D             P  + AP P P A   P  P  P S+    P P P + L KPK+
Sbjct: 290 NSDSEDSSEGLEDRPLPVLSLAPAPPPVAVASPSLPSPPVSLDPCAPAPAPASALQKPKI 349

Query: 335 WSLAEIATSSDKVKDGGGGNEGSPCPPCPG-PIAGQALGGSRASPAPAPSRSPSAQCPFP 393
           WSLAE ATS D  +    G  GSP    PG  +A  AL  S A+ A A  R  SA    P
Sbjct: 350 WSLAETATSPDNPRRSPPGAGGSP----PGAAVAPSALQLSPAAAAAAAHRLVSA----P 401

Query: 394 GGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGP 435
            G             +P +TN          PGP PGP   P
Sbjct: 402 LGK------------FPAWTN-------RPFPGPPPGPRLHP 424


>gi|7705555 iroquois homeobox 4 [Homo sapiens]
          Length = 519

 Score =  204 bits (519), Expect = 1e-52
 Identities = 150/402 (37%), Positives = 193/402 (48%), Gaps = 40/402 (9%)

Query: 12  SASLALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPGYNSHLQYGADP 71
           SA   +Y CP Y + +++  R +    ++ G    PY GS        GY +++ YG++ 
Sbjct: 42  SAQAPVY-CPVYESRLLATARHELNSAAALGVYGGPYGGSQ-------GYGNYVTYGSEA 93

Query: 72  AAAAAA-AFSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPYG------DPAYRKNATRDA 124
           +A  +  +F S  GS   H      +  Y+PY   LG YPY           RKNATR+ 
Sbjct: 94  SAFYSLNSFDSKDGSGSAHGGLAPAAAAYYPYEPALGQYPYDRYGTMDSGTRRKNATRET 153

Query: 125 TATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNR 184
           T+TLKAWL EHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTW PRN+
Sbjct: 154 TSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWPPRNK 213

Query: 185 SEDE-----EEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPA 239
             DE     E EE    E+   +EP K     +P G E    E       + L+  P   
Sbjct: 214 CADEKRPYAEGEEEEGGEEEAREEPLKSSKNAEPVGKEEKELELSDLDDFDPLEAEPPAC 273

Query: 240 GKETEGSLSDSDFKEPPS--EGRLDALQGPPRTGGPSPAGPAAARLAED-PAPHYPAGAP 296
             +      D   +  P+  +G +    G  R    S A    A L ED         + 
Sbjct: 274 ELKPPFHSLDGGLERVPAAPDGPVKEASGALRM---SLAAGGGAALDEDLERARSCLRSA 330

Query: 297 APGPHPAAGEVPPGPGGPSVIHSP----PPPPPPAVLAKPKLWSLAEIATSSDKVKDGGG 352
           A GP P    +P   GGP V  +     P      + AKP++WSLA  AT++        
Sbjct: 331 AAGPEP----LPGAEGGPQVCEAKLGFVPAGASAGLEAKPRIWSLAHTATAAAAAATSLS 386

Query: 353 GNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPG 394
             E    P C     G A   + A+ + AP+ SPS   P  G
Sbjct: 387 QTE---FPSCMLKRQGPA---APAAVSSAPATSPSVALPHSG 422


>gi|51479177 iroquois homeobox protein 1 [Homo sapiens]
          Length = 480

 Score =  190 bits (483), Expect = 2e-48
 Identities = 170/466 (36%), Positives = 215/466 (46%), Gaps = 94/466 (20%)

Query: 1   MSYPQ-GYLYQPSASL----------ALYSCPAYSTSVISG-PRTDELGRSSSGSAFSPY 48
           MS+PQ GY    SA+            L +  A + +  SG P   ELG  +  +A +  
Sbjct: 1   MSFPQLGYPQYLSAAGPGAYGGERPGVLAAAAAAAAAASSGRPGAAELGGGAGAAAVTSV 60

Query: 49  AGSTAFTAP---SPGYNSHLQYGADPAAAAAAAFSSYVGSPYDHTPGMAGSLGYHP--YA 103
            G  A   P   +P Y++ L Y AD       +  S +GS Y+    +  + G HP  +A
Sbjct: 61  LGMYAAAGPYAGAPNYSAFLPYAAD------LSLFSQMGSQYE----LKDNPGVHPATFA 110

Query: 104 A-------PLGSYPYGDPAYRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMT 156
           A       P G + YGDP   KNATR++T+TLKAWLNEHRKNPYPTKGEKIMLAIITKMT
Sbjct: 111 AHTAPAYYPYGQFQYGDPGRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMT 170

Query: 157 LTQVSTWFANARRRLKKENKMTWTPRNRSEDE---------------EEEENIDLEKNDE 201
           LTQVSTWFANARRRLKKENK+TW  R++ +++               E++E IDLE  D 
Sbjct: 171 LTQVSTWFANARRRLKKENKVTWGARSKDQEDGALFGSDTEGDPEKAEDDEEIDLESIDI 230

Query: 202 D-------EPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDF-K 253
           D       +    +D+   E P A      A S   R QG P  A    +   S     K
Sbjct: 231 DKIDEHDGDQSNEDDEDKAEAPHA----PAAPSALARDQGSPLAAADVLKPQDSPLGLAK 286

Query: 254 EPPSEGRLDALQGPPRTGG--PSPAG-PAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPG 310
           E P  G    L      GG   +P G P    LAE      P GAP   P P AG   PG
Sbjct: 287 EAPEPGSTRLLSPGAAAGGLQGAPHGKPKIWSLAETATS--PDGAPKASPPPPAGH--PG 342

Query: 311 PGGPSVIHSPPPPPPPAVLAKPKLWS--------------LAEIATSSDKVKDGGGGNEG 356
             GPS   +  P   PA L    L++              LA+ +  + +   G G    
Sbjct: 343 AHGPS---AGAPLQHPAFLPSHGLYTCHIGKFSNWTNSAFLAQGSLLNMRSFLGVGAPHA 399

Query: 357 S------PCPPCPGP---IAGQALGGSRASPAPAPSRSPSAQCPFP 393
           +      P PP P P   IA  AL G +AS   +P+       P P
Sbjct: 400 APHGPHLPAPPPPQPPVAIAPGALNGDKASVRSSPTLPERDLVPRP 445


>gi|42544241 iroquois homeobox protein 6 [Homo sapiens]
          Length = 446

 Score =  176 bits (445), Expect = 6e-44
 Identities = 147/431 (34%), Positives = 181/431 (41%), Gaps = 92/431 (21%)

Query: 20  CPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPGYNSHLQYGADPAAAAAAA- 78
           C  Y + ++   R +       G+A   Y    A  A +  Y  +L Y  +P +   A  
Sbjct: 49  CAPYDSRLLGSARPE------LGAALGIYGAPYAAAAAAQSYPGYLPYSPEPPSLYGALN 102

Query: 79  ----FSSYVGSPYDHTPGMAGSLGYHPYAAPLGSYPY--------GDPAYRKNATRDATA 126
               F    GS    T  +A    Y+PY   LG Y Y             RKNATR+ T+
Sbjct: 103 PQYEFKEAAGS---FTSSLAQPGAYYPYERTLGQYQYERYGAVELSGAGRRKNATRETTS 159

Query: 127 TLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNRSE 186
           TLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTW P+N+  
Sbjct: 160 TLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWAPKNKGG 219

Query: 187 DEE-----EEENI----------------------DLEKNDEDEPQKPEDKGDPEGPEAG 219
           +E      EE+++                      DLE  +E+E ++ E + +     AG
Sbjct: 220 EERKAEGGEEDSLGCLTADTKEVTASQEARGLRLSDLEDLEEEEEEEEEAEDEEVVATAG 279

Query: 220 GAEQKAASGCERLQGPPTPAGKETEGSLSDSD---------FKEPPSEGRLDALQ---GP 267
               +   G + L GP   A    EG L   +         F +P      D L    G 
Sbjct: 280 DRLTEFRKGAQSLPGPCAAA---REGRLERRECGLAAPRFSFNDPSGSEEADFLSAETGS 336

Query: 268 PRTGGPSPA--GPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPP 325
           PR     P    P    LA         GAP   P P + E    PG            P
Sbjct: 337 PRLTMHYPCLEKPRIWSLAHTATASAVEGAPPARPRPRSPECRMIPG-----------QP 385

Query: 326 PAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRS 385
           PA        S   ++   D   D       S C P        AL G   + AP P RS
Sbjct: 386 PA--------SARRLSVPRDSACD------ESSCIPKAFGNPKFALQGLPLNCAPCPRRS 431

Query: 386 -PSAQCPFPGG 395
            P  QC +P G
Sbjct: 432 EPVVQCQYPSG 442


>gi|178057337 mohawk homeobox [Homo sapiens]
          Length = 352

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 112 GDPAYRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 171
           G   +++ A +D    LK WL +HR NPYPTK EKI+LA+ ++MTL QVS WFANARRRL
Sbjct: 69  GKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNWFANARRRL 128

Query: 172 K---KENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPE-GPEAGGAEQKAAS 227
           K   ++  ++W  R +  ++  + N +      D+    + +  P      GG       
Sbjct: 129 KNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEGGYNTPVHH 188

Query: 228 GCERLQGPPTPAGKETEGSLSDSDFKEPP 256
              + +     AG   E   S+ D+  PP
Sbjct: 189 PVIKSENSVIKAGVRPESRASE-DYVAPP 216


>gi|33286446 opioid growth factor receptor [Homo sapiens]
          Length = 677

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 67/203 (33%), Positives = 85/203 (41%), Gaps = 20/203 (9%)

Query: 208 EDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGP 267
           E  GD     +GGA+  A +G     G P  AG    G   D++ +  P EG   +   P
Sbjct: 463 EGAGDSAAVASGGAQTLALAGSPAPSGHPK-AGHSENGVEEDTEGRTGPKEGTPGS---P 518

Query: 268 PRTGGPSPAGPAAARLAEDPA------PHYPAG-APAPGPHPAAGEVPPGPGGPSVIHSP 320
             T GPSPAGPA    AE P+      P  PAG  PA  P    G  P GP G     SP
Sbjct: 519 SETPGPSPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESP 578

Query: 321 PPPPPPAVLAKPKLWSLAEIATSSDKVKDGG-GGNEGSPCP-PCPGPIAGQALGGSRASP 378
              P P+  A P     AE  + +   +  G  G+E +  P   PGP   +  G +   P
Sbjct: 579 SETPGPSP-AGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGP---RPAGPAGDEP 634

Query: 379 APAPSRSPSAQCPFPGGTVLSRP 401
           A +PS +P    P P G     P
Sbjct: 635 AESPSETPG---PSPAGPTRDEP 654



 Score = 55.8 bits (133), Expect = 8e-08
 Identities = 44/129 (34%), Positives = 52/129 (40%), Gaps = 18/129 (13%)

Query: 202 DEPQKPEDKGDPEGPE-AGGAEQKAASGCERLQGPPT--PAGKETEGSLSDSDFKEPPSE 258
           DEP   E   +  GP  AG A  + A       GP    PAG E   S S++    P   
Sbjct: 532 DEPA--ESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGP 589

Query: 259 GRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIH 318
            R +  + P  T GP PAGPA    AE P       +  PGP PA      GP G     
Sbjct: 590 TRDEPAESPSETPGPRPAGPAGDEPAESP-------SETPGPRPA------GPAGDEPAE 636

Query: 319 SPPPPPPPA 327
           SP   P P+
Sbjct: 637 SPSETPGPS 645



 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 36/106 (33%), Positives = 44/106 (41%), Gaps = 14/106 (13%)

Query: 202 DEPQKPEDKGDPEGPE-AGGAEQKAASGCERLQGPPTPAGK---ETEGSLSDSDFKEPPS 257
           DEP   E   +  GP  AG A  + A       GP +PAG    E   S S++    P  
Sbjct: 552 DEPA--ESPSETPGPRPAGPAGDEPAESPSETPGP-SPAGPTRDEPAESPSETPGPRPAG 608

Query: 258 EGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPA 303
               +  + P  T GP PAGPA    AE P       +  PGP PA
Sbjct: 609 PAGDEPAESPSETPGPRPAGPAGDEPAESP-------SETPGPSPA 647


>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
          Length = 416

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 77/258 (29%), Positives = 91/258 (35%), Gaps = 40/258 (15%)

Query: 202 DEPQKPEDKGDPEGPEAGGAEQKAA-SGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGR 260
           ++PQ P   G P+GP   G + ++  S   + QGPP   G + +G         PP  G+
Sbjct: 87  NKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGP--------PPPPGK 138

Query: 261 LDALQGPPRTGGPSPAGPAAARLAEDPAP---------HYPAGAPAPGPHPAAGEVPPG- 310
               QGPP  GG  P GP      + P P           P G P  GP P  G  P G 
Sbjct: 139 P---QGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKP-QGPPPQGGNQPQGP 194

Query: 311 PGGPSVIHSPP---------PPPPPAVLAKPKLWSLAEIATSSDKVKDGG----GGNEGS 357
           P  P     PP         PPPP      P        +  S   K  G    GGN+  
Sbjct: 195 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQ 254

Query: 358 PCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGS 417
             PP PG   G    G      P P   P  Q P P G   SR          G    G 
Sbjct: 255 GPPPPPGKPQGPPPQGGNKPQGPPPPGKP--QGPPPQGGSKSRSSRSPPGKPQGPPPQG- 311

Query: 418 FGHLHGHPGPGPGPTTGP 435
            G+    P P PG   GP
Sbjct: 312 -GNQPQGPPPPPGKPQGP 328



 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 68/224 (30%), Positives = 81/224 (36%), Gaps = 39/224 (17%)

Query: 202 DEPQKPEDKGDPEGPEAGGAEQKAASGCE--RLQGPPTPAGKETEGSLSDSDFKEPPSEG 259
           ++PQ P   G P+GP   G  +  +S     + QGPP   G + +G         PP  G
Sbjct: 148 NKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGP--------PPPPG 199

Query: 260 RLDALQGPPRTGGPSPAGPAAARLAEDPAP---------HYPAGAPAPGPHPAAGEVPPG 310
           +    QGPP  GG  P GP      + P P           P G P  GP P  G  P G
Sbjct: 200 KP---QGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKP-QGPPPQGGNQPQG 255

Query: 311 -PGGPSVIHSPP---------PPPPPAVLAKPKLWSLAEIATSSDKVKDGG----GGNEG 356
            P  P     PP         PPPP      P        ++ S   K  G    GGN+ 
Sbjct: 256 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQP 315

Query: 357 SPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSR 400
              PP PG   G    G      P P   P  Q P P G   SR
Sbjct: 316 QGPPPPPGKPQGPPPQGGNKPQGPPPPGKP--QGPPPQGGSKSR 357



 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 70/218 (32%), Positives = 80/218 (36%), Gaps = 45/218 (20%)

Query: 202 DEPQKPEDKGDPEGPEAGG--AEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEG 259
           ++PQ P   G P+GP   G    Q A S   + QGPP   G + +G         PP  G
Sbjct: 210 NKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGP--------PPPPG 261

Query: 260 RLDALQGPPRTGGPSPAGPAAARLAEDPAP---------HYPAGAPAPGPHPAAGEVPPG 310
           +    QGPP  GG  P GP      + P P           P G P  GP P  G  P G
Sbjct: 262 KP---QGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKP-QGPPPQGGNQPQG 317

Query: 311 -PGGPSVIHSPPP--------PPPPAVL--AKPKLWSLAEIATSSDKVKDG----GGGNE 355
            P  P     PPP        PPPP       P+  S +  A S      G     G N 
Sbjct: 318 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNP 377

Query: 356 GSPCPPCPG-------PIAGQALGGSRASPAPAPSRSP 386
             P PP  G       P AGQ  G  R      PSR P
Sbjct: 378 QGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 415



 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 77/277 (27%), Positives = 98/277 (35%), Gaps = 50/277 (18%)

Query: 182 RNRSEDEEEEENIDLEKNDE--------DEPQ-KPEDKGDPEGP--EAGGAEQKAASGCE 230
           +N +ED  +EE+  L   +         ++PQ  P   G P+GP  + G   Q       
Sbjct: 17  QNLNEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPG 76

Query: 231 RLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDAL--------QGPPRTGGPSPAGPAAAR 282
           + QGPP   G + +G       + PP +G             QGPP  GG  P GP    
Sbjct: 77  KPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGP---- 132

Query: 283 LAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIAT 342
               P P  P G P  G +   G  PPG          P  PPP    K +       ++
Sbjct: 133 ---PPPPGKPQGPPPQGGNKPQGPPPPG---------KPQGPPPQGDNKSR-------SS 173

Query: 343 SSDKVKDGG----GGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVL 398
            S   K  G    GGN+    PP PG   G    G      P P   P  Q P P G   
Sbjct: 174 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP--QGPPPQGDNK 231

Query: 399 SRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGP 435
           S+          G    G  G+    P P PG   GP
Sbjct: 232 SQSARSPPGKPQGPPPQG--GNQPQGPPPPPGKPQGP 266


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 86/281 (30%), Positives = 100/281 (35%), Gaps = 51/281 (18%)

Query: 198 KNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPS 257
           K ++  P K  ++G P GP   G   K  +G    QGPP P G    G   D+    P  
Sbjct: 584 KGNDGAPGKNGERGGPGGPGPQGPPGK--NGETGPQGPPGPTGPG--GDKGDTGPPGPQG 639

Query: 258 EGRLDALQGPP----RTGGPSPAGPAAARLAEDPAPHYPAGAP----------APGPHPA 303
              L    GPP    + G P P G A A  A  P     AGAP          APG    
Sbjct: 640 LQGLPGTGGPPGENGKPGEPGPKGDAGAPGA--PGGKGDAGAPGERGPPGLAGAPGLRGG 697

Query: 304 AGEVPPGPGGPSVIHSPPPPP----PPAVLAKP-KLWSLAEIATSSDKVKDGGGGNEGSP 358
           AG  PPGP G      PP PP     P +   P +   L       DK + GG G +G P
Sbjct: 698 AG--PPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVP 755

Query: 359 CPPCP----GPI-----AGQ-------------ALGGSRASPAPAPSRSPSAQCPFPGGT 396
               P    GPI     AGQ              + G R SP       P     FPG  
Sbjct: 756 GKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAP 815

Query: 397 VLS-RPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436
             +  P        PG    G    + G PG G GP   PG
Sbjct: 816 GQNGEPGGKGERGAPGEKGEGGPPGVAGPPG-GSGPAGPPG 855



 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 78/272 (28%), Positives = 94/272 (34%), Gaps = 56/272 (20%)

Query: 204  PQKPEDKGDPEGPEA--GGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRL 261
            P  P  +G P GP+   G + +  A+G    +GPP P G       +     EP  +G  
Sbjct: 962  PGMPGPRGSP-GPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAG----EPGRDGNP 1016

Query: 262  DALQGPPRTGGP----------SPAGPAAARLAEDPAPHYPAG-----------APAPGP 300
             +   P R G P          SP  P A      P P  PAG            PA  P
Sbjct: 1017 GSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAP 1076

Query: 301  HPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCP 360
             PA     PGP GP                +       E   +  K   G  GN G+P  
Sbjct: 1077 GPAGSRGAPGPQGP----------------RGDKGETGERGAAGIKGHRGFPGNPGAPGS 1120

Query: 361  PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYT-----NY 415
            P P   AGQ   G+  SP PA  R P      PG    S       P  P        + 
Sbjct: 1121 PGP---AGQQ--GAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSE 1175

Query: 416  GSFGHLHGHPGPGPGPTTGPGSHFNGLNQTVL 447
            GS GH  G PGP PGP   PG    G+    +
Sbjct: 1176 GSPGH-PGQPGP-PGPPGAPGPCCGGVGAAAI 1205



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 79/294 (26%), Positives = 93/294 (31%), Gaps = 75/294 (25%)

Query: 197  EKNDEDEPQKPEDKGDPEGPEAGGAEQK-AASGCERLQGPPTPAGKETE----------- 244
            E+     P    DKG+P GP A G   K    G     GPP PAG+  +           
Sbjct: 730  ERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPG 789

Query: 245  -----GSLSDSDFKEPP---------------------------SEGRLDALQGPPRTGG 272
                 GS  +     PP                            EG    + GPP  GG
Sbjct: 790  IAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPP--GG 847

Query: 273  PSPAGPAAAR--LAEDPAPHYPAGAPAPG----PHPAAGEVPPGPGGPSVIHSPPPPPPP 326
              PAGP   +    E  +P  P  A  PG    P P      PGP GPS       PP P
Sbjct: 848  SGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGP 907

Query: 327  AVLAKPKLWSLAEIATSSDKVKDGGGGNEGSP----CPPCPGPIAGQALGGSRASPAPAP 382
            A        +      S  K   G  G +GSP     P  PGP+    + G+R    P  
Sbjct: 908  A----GNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPG 963

Query: 383  SRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436
               P    P P G               G +       L G  GP PGP   PG
Sbjct: 964  MPGPRGS-PGPQGV-------------KGESGKPGANGLSGERGP-PGPQGLPG 1002



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 79/262 (30%), Positives = 92/262 (35%), Gaps = 49/262 (18%)

Query: 204  PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE-TEGSLSDS----DFKEPPSE 258
            P  P   G+P  P   G+  K         GPP PAG     GS   S    D  +P  +
Sbjct: 881  PGPPGSNGNPGPPGPSGSPGK--------DGPPGPAGNTGAPGSPGVSGPKGDAGQPGEK 932

Query: 259  GRLDALQGPPRTGGP-SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEV-PPGPGGPSV 316
            G   A QGPP   GP   AG   AR    P P  P    +PGP    GE   PG  G S 
Sbjct: 933  GSPGA-QGPPGAPGPLGIAGITGARGLAGP-PGMPGPRGSPGPQGVKGESGKPGANGLSG 990

Query: 317  IHSPPPPPPPAVLAKPKLWSLAEIATSSDKV--KDG--GG----------------GNEG 356
               PP P     LA        +    SD +  +DG  GG                G+ G
Sbjct: 991  ERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPG 1050

Query: 357  SPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYG 416
             P P  P   +G       A PA AP  + S   P P G    +          G T   
Sbjct: 1051 PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDK----------GETGER 1100

Query: 417  SFGHLHGHPG-PG-PGPTTGPG 436
                + GH G PG PG    PG
Sbjct: 1101 GAAGIKGHRGFPGNPGAPGSPG 1122



 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 69/242 (28%), Positives = 82/242 (33%), Gaps = 69/242 (28%)

Query: 203 EPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLD 262
           EP K   KG+P GP      ++  +G      P  P  K  +G   D    EP + G   
Sbjct: 433 EPGKNGAKGEP-GPRG----ERGEAGI-----PGVPGAKGEDGK--DGSPGEPGANGLPG 480

Query: 263 ALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAP-GPHPAAGEVPPG----PGGPSVI 317
           A       G   PAGP      + PA     GAP P GP  AAGE  PG    PGGP + 
Sbjct: 481 AAGERGAPGFRGPAGPNGIPGEKGPAGE--RGAPGPAGPRGAAGE--PGRDGVPGGPGMR 536

Query: 318 HSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRAS 377
             P  P                          GG G++G P PP       Q   G    
Sbjct: 537 GMPGSP--------------------------GGPGSDGKPGPP-----GSQGESGRPGP 565

Query: 378 PAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGP-GPGPTTGPG 436
           P P+  R       FPG                   N G+ G      GP GPGP   PG
Sbjct: 566 PGPSGPRGQPGVMGFPGPK----------------GNDGAPGKNGERGGPGGPGPQGPPG 609

Query: 437 SH 438
            +
Sbjct: 610 KN 611



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 50/184 (27%), Positives = 63/184 (34%), Gaps = 27/184 (14%)

Query: 207 PEDKGDPEGPEAGGAE-QKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQ 265
           P ++G P  P A GA     A G +   GPP P G  T G         P ++G +    
Sbjct: 305 PGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPG--TAGFPGS-----PGAKGEVGPAG 357

Query: 266 GPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPG---------PGGPSV 316
            P   G P   G        +P P   AGA  P   P     P G         PG P +
Sbjct: 358 SPGSNGAPGQRG--------EPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGL 409

Query: 317 IHSPPPPPPPAVLAKPKL-WSLAEIATSSDKVKDGGGGNEG-SPCPPCPGPIAGQALGGS 374
           + +  PP P      P L     E   +  K + G  G  G +  P  PG        GS
Sbjct: 410 MGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGS 469

Query: 375 RASP 378
              P
Sbjct: 470 PGEP 473



 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 50/193 (25%), Positives = 62/193 (32%), Gaps = 34/193 (17%)

Query: 197  EKNDEDEPQKPEDKGDPEGP----EAGGAEQKAASGCERLQGPPTPAGKE-TEGSLSDSD 251
            ++ +   P  P   G P  P     AG +  +  SG     G P PAG     G      
Sbjct: 1033 DRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRG 1092

Query: 252  FKEPPSEGRLDALQG-------PPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAA 304
             K    E     ++G       P   G P PAG   A     P P  P G       P  
Sbjct: 1093 DKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGA--IGSPGPAGPRG-------PVG 1143

Query: 305  GEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPG 364
               PPG  G S    P  PP P                  ++  +G  G+ G P PP P 
Sbjct: 1144 PSGPPGKDGTSGHPGPIGPPGPR-------------GNRGERGSEGSPGHPGQPGPPGPP 1190

Query: 365  PIAGQALGGSRAS 377
               G   GG  A+
Sbjct: 1191 GAPGPCCGGVGAA 1203



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 62/237 (26%), Positives = 74/237 (31%), Gaps = 57/237 (24%)

Query: 234 GPPTPAGKETE-GSLSDSDFKEPPSEGRLDALQGPP-RTGGPSPAGPAAARLAEDPAPHY 291
           GPP P G     GS     ++ PP E       GPP   G   P+GP A +  E   P  
Sbjct: 180 GPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGP-AGKDGESGRPGR 238

Query: 292 PAGAPAPGPHPAAGE--VPPGPGG---------------------------PSVIHSPPP 322
           P     PGP    G   +P  PG                            P    +P P
Sbjct: 239 PGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGP 298

Query: 323 PPP---PAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPA 379
             P   P    +P L   A       +  DG  G++G P PP P   AG   G   A   
Sbjct: 299 MGPRGAPGERGRPGLPGAA-----GARGNDGARGSDGQPGPPGPPGTAGFP-GSPGAKGE 352

Query: 380 PAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436
             P+ SP +                 AP   G           G PGP PG    PG
Sbjct: 353 VGPAGSPGSN---------------GAPGQRGEPGPQGHAGAQGPPGP-PGINGSPG 393



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 54/193 (27%), Positives = 63/193 (32%), Gaps = 16/193 (8%)

Query: 204 PQKPEDKGDPEGPEA--GGAEQKAASGCERLQGPPT---PAG----KETEGSLSDSDFKE 254
           P  P     P GP    G + +    G   L GPP    PAG       +G         
Sbjct: 214 PPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNG 273

Query: 255 PPSEGRLDALQG----PPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAG-EVPP 309
              E     L+G    P   G P P GP  A   E   P  P  A A G   A G +  P
Sbjct: 274 EKGETGAPGLKGENGLPGENGAPGPMGPRGAP-GERGRPGLPGAAGARGNDGARGSDGQP 332

Query: 310 GPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQ 369
           GP GP      P  P       P   S         + + G  G+ G+  PP P  I G 
Sbjct: 333 GPPGPPGTAGFPGSPGAKGEVGPA-GSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGS 391

Query: 370 ALGGSRASPAPAP 382
             G     PA  P
Sbjct: 392 PGGKGEMGPAGIP 404



 Score = 36.2 bits (82), Expect = 0.068
 Identities = 51/206 (24%), Positives = 58/206 (28%), Gaps = 47/206 (22%)

Query: 265 QGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGP------------- 311
           QGP   G P P G    R  +   P  P    +PGP       P GP             
Sbjct: 105 QGPK--GDPGPPG-IPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVK 161

Query: 312 ---------GGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP- 361
                    G P     P PP PP     P   S           + G  G  G P PP 
Sbjct: 162 SGVAVGGLAGYPGPAGPPGPPGPPGTSGHP--GSPGSPGYQGPPGEPGQAGPSGPPGPPG 219

Query: 362 CPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHL 421
             GP       G    P     R        PG   +  P     P +PG   +  F   
Sbjct: 220 AIGPSGPAGKDGESGRPGRPGERG------LPGPPGIKGPA--GIPGFPGMKGHRGFDGR 271

Query: 422 HGHPG----PG-------PGPTTGPG 436
           +G  G    PG       PG    PG
Sbjct: 272 NGEKGETGAPGLKGENGLPGENGAPG 297



 Score = 33.5 bits (75), Expect = 0.44
 Identities = 49/168 (29%), Positives = 56/168 (33%), Gaps = 19/168 (11%)

Query: 279 AAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAK----PKL 334
           A  R      P  P G P P   P     P  PG P    SP  P PP +       P+ 
Sbjct: 94  APTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPG---SPGSPGPPGICESCPTGPQN 150

Query: 335 WSLAEIATSSDKVKDG--GGGNEGSPCPP-CPGPIAGQALGGSRASPAPAPSRSPSAQCP 391
           +S       S  VK G   GG  G P P   PGP       G   SP     + P  +  
Sbjct: 151 YS---PQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPG 207

Query: 392 FPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPG----PGPGPTTGP 435
             G +    P     P  P   + G  G   G PG    PGP    GP
Sbjct: 208 QAGPSGPPGPPGAIGPSGPAGKD-GESGR-PGRPGERGLPGPPGIKGP 253



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 45/165 (27%), Positives = 53/165 (32%), Gaps = 18/165 (10%)

Query: 273 PSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGG-PSVIHSPPPPPPPAVLAK 331
           P+P  P     A  P P      P  G  P   +  PGP G P     P  P  P     
Sbjct: 75  PNPEIPFGECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGS 134

Query: 332 PKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCP 391
           P    + E   +        G    SP        +G A+GG    P PA    P    P
Sbjct: 135 PGPPGICESCPT--------GPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGP----P 182

Query: 392 FPGGTVLSRPLYYTAPFYPGYTN-YGSFGHLHGHPGPGPGPTTGP 435
            P GT      +  +P  PGY    G  G       PGP    GP
Sbjct: 183 GPPGT----SGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGP 223



 Score = 29.3 bits (64), Expect = 8.3
 Identities = 30/100 (30%), Positives = 34/100 (34%), Gaps = 14/100 (14%)

Query: 207  PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE----TEGSLSDSDFKEPPSEGRLD 262
            P     P GP +G   +   SG     GPP P G      +EGS        PP      
Sbjct: 1135 PAGPRGPVGP-SGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPP------ 1187

Query: 263  ALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHP 302
               GPP   GP   G  AA +A          AP  G  P
Sbjct: 1188 ---GPPGAPGPCCGGVGAAAIAGIGGEKAGGFAPYYGDEP 1224


>gi|56549694 enabled homolog isoform a [Homo sapiens]
          Length = 591

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 52/176 (29%), Positives = 73/176 (41%), Gaps = 26/176 (14%)

Query: 168 RRRLKKENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPE----DKGDPEGPEAGGAEQ 223
           + RL+++ ++      R E  E +E +D E+ +  E ++ E    ++ + E  E    EQ
Sbjct: 201 QERLERQERL-----ERQERLERQERLDRERQERQERERLERLERERQERERQEQLEREQ 255

Query: 224 KAASGCERLQGPPTPAGKET--EGSLSDSDFKEPPSEGRLDALQGPPRTG---------- 271
                  R+     PA  ET     L DS   EP  +      + P + G          
Sbjct: 256 LEWERERRISSAAAPASVETPLNSVLGDSSASEPGLQAASQPAETPSQQGIVLGPLAPPP 315

Query: 272 -GPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPP 326
             P P GPA A +A  P P    G P P P P+ G  PP P  P     PPPPPPP
Sbjct: 316 PPPLPPGPAQASVALPPPP----GPPPPPPLPSTGPPPPPPPPPLPNQVPPPPPPP 367


>gi|39930375 enabled homolog isoform b [Homo sapiens]
          Length = 570

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 52/176 (29%), Positives = 73/176 (41%), Gaps = 26/176 (14%)

Query: 168 RRRLKKENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPE----DKGDPEGPEAGGAEQ 223
           + RL+++ ++      R E  E +E +D E+ +  E ++ E    ++ + E  E    EQ
Sbjct: 201 QERLERQERL-----ERQERLERQERLDRERQERQERERLERLERERQERERQEQLEREQ 255

Query: 224 KAASGCERLQGPPTPAGKET--EGSLSDSDFKEPPSEGRLDALQGPPRTG---------- 271
                  R+     PA  ET     L DS   EP  +      + P + G          
Sbjct: 256 LEWERERRISSAAAPASVETPLNSVLGDSSASEPGLQAASQPAETPSQQGIVLGPLAPPP 315

Query: 272 -GPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPP 326
             P P GPA A +A  P P    G P P P P+ G  PP P  P     PPPPPPP
Sbjct: 316 PPPLPPGPAQASVALPPPP----GPPPPPPLPSTGPPPPPPPPPLPNQVPPPPPPP 367


>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
           preproprotein [Homo sapiens]
          Length = 331

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 78/264 (29%), Positives = 95/264 (35%), Gaps = 47/264 (17%)

Query: 182 RNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEA--GGAEQKAASGCERLQGPPTPA 239
           +N +ED  +EE+  L   +   P  P+    P+GP    G  +     G  + QGPP P 
Sbjct: 17  QNLNEDVSQEESPSLIAGNPQGPS-PQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 75

Query: 240 ---GKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAP 296
              G   +G  S S  + PP +      QGPP  GG  P GP        P P  P G P
Sbjct: 76  KPQGPPPQGDKSRSP-RSPPGKP-----QGPPPQGGNQPQGP-------PPPPGKPQGPP 122

Query: 297 APGPHPAAGEVPPG-PGGP----SVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGG 351
             G +   G  PPG P GP        SP  PP       P+                  
Sbjct: 123 PQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQ------------------ 164

Query: 352 GGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPG 411
           GGN+    PP PG   G    G +    P P   P  Q P P G   SR          G
Sbjct: 165 GGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKP--QGPPPQGD-KSRSSQSPPGKPQG 221

Query: 412 YTNYGSFGHLHGHPGPGPGPTTGP 435
               G  G+    P P PG   GP
Sbjct: 222 PPPQG--GNQPQGPPPPPGKPQGP 243



 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 58/200 (29%), Positives = 65/200 (32%), Gaps = 37/200 (18%)

Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263
           P+ P  K     P+ G   Q       + QGPP   GK+ +G       + PP +G    
Sbjct: 151 PRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSR 210

Query: 264 L--------QGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPS 315
                    QGPP  GG  P GP             P G P  GP P  G  P GP    
Sbjct: 211 SSQSPPGKPQGPPPQGGNQPQGPPP-----------PPGKP-QGPPPQGGNKPQGP---- 254

Query: 316 VIHSPPP--PPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPG-------PI 366
               PPP  P  P      K  S               G N   P PP  G       P 
Sbjct: 255 ----PPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPP 310

Query: 367 AGQALGGSRASPAPAPSRSP 386
           AGQ  G  R      PSR P
Sbjct: 311 AGQPQGPPRPPQGGRPSRPP 330



 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 12/112 (10%)

Query: 202 DEPQ-KPEDKGDPEGPEA-GGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEG 259
           ++PQ  P   G P+GP   GG + +      + QGPP   G +++ + S     + P + 
Sbjct: 228 NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQ 287

Query: 260 RLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGP 311
             +  QGPP   G +P  P A           PAG P   P P  G  P  P
Sbjct: 288 EGNNPQGPPPPAGGNPQQPQAP----------PAGQPQGPPRPPQGGRPSRP 329


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 70/241 (29%), Positives = 79/241 (32%), Gaps = 31/241 (12%)

Query: 204  PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263
            P  P  KG P  P A     K        +  PTP                P       A
Sbjct: 931  PASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPA 990

Query: 264  LQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSP--- 320
               P   GGP+   P  A       P  P G+PA  P P     PP    PS   SP   
Sbjct: 991  ATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAAT 1050

Query: 321  -----PPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPC---PGPIAGQALG 372
                  P  P A L  PK       AT S K         G+P PP    P P  G A  
Sbjct: 1051 PLPKGAPTTPAATLPSPK----GGPATPSLK---------GAPTPPAATPPSPKGGPATP 1097

Query: 373  GSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPT 432
              + +P P     P+A  P P G  L+ P +  AP  P  T     G L   P P   PT
Sbjct: 1098 SPKGAPMP-----PAATPPSPKGG-LATPPHKGAPTTPAATPPSPKGGL-ATPPPKGAPT 1150

Query: 433  T 433
            T
Sbjct: 1151 T 1151



 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 62/189 (32%), Positives = 68/189 (35%), Gaps = 29/189 (15%)

Query: 207  PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQG 266
            P  KG P  P A     K        +G PTP                PPS      L  
Sbjct: 1235 PSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAAT------------PPS--LKGGLAT 1280

Query: 267  PPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPP---P 323
            PP  G P+PA          PA   P GAP P   PAA   PP P G     +PPP   P
Sbjct: 1281 PPHKGAPNPAVVTPPSPKGGPATSPPKGAPTP---PAA--TPPSPKGSP--GTPPPKGAP 1333

Query: 324  PPPAVL-AKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAP 382
             PPAV    PK        T S K   GG     S   P P P A  +  G  A   P+P
Sbjct: 1334 TPPAVTPPSPKGTPTLPATTPSSK---GGPTTPSSKEGPTP-PAATPSHKGGPAMTPPSP 1389

Query: 383  SRSPSAQCP 391
             R P+   P
Sbjct: 1390 KRGPAIPSP 1398



 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 69/238 (28%), Positives = 84/238 (35%), Gaps = 22/238 (9%)

Query: 207  PEDKGDPEG-PEAGGAEQKAASGCERLQGPPT----PAGKETEGSLSDSDFKEPPSEGRL 261
            P  KG P   P   GA    A+     +G P     P G  T  + +    K  P+   L
Sbjct: 1017 PSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSL 1076

Query: 262  DALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPG----PHPAAG-EVPPGPGGPSV 316
                 PP    PSP G         PA   P GAP P     P P  G   PP  G P+ 
Sbjct: 1077 KGAPTPPAATPPSPKG--------GPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTT 1128

Query: 317  IHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGG-SR 375
              + PP P   +   P   +    A +    K G         P  P        GG + 
Sbjct: 1129 PAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLAT 1188

Query: 376  ASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTT 433
             SP  AP+ +P+A  P P G  L+ P    AP  P  T     G L   P P   PTT
Sbjct: 1189 PSPKGAPT-TPAATPPSPKGG-LATPSPKGAPTTPAATPPSPKGGL-ATPSPKGAPTT 1243



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 72/251 (28%), Positives = 86/251 (34%), Gaps = 32/251 (12%)

Query: 204  PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPT-PAGK--ETEGSLSDSDFKEPPSEGR 260
            P  P  KG P  P A     K        +G PT PA      +G L+    K  P+   
Sbjct: 1094 PATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTT-- 1151

Query: 261  LDALQGPPRTGG---PSPAGPAAARLAEDPAPH------YPAGAP----APGPHPAAGEV 307
              A   P   GG   P P G      A  P+P        P GAP    A  P P  G  
Sbjct: 1152 -PAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLA 1210

Query: 308  PPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGN---EGSPCPPCPG 364
             P P G     +  PP P   LA P          ++     GG      +G+P PP   
Sbjct: 1211 TPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAAT 1270

Query: 365  PIA---GQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHL 421
            P +   G A    + +P PA    PS +    GG   S P    AP  P  T     G  
Sbjct: 1271 PPSLKGGLATPPHKGAPNPAVVTPPSPK----GGPATSPP--KGAPTPPAATPPSPKGS- 1323

Query: 422  HGHPGPGPGPT 432
             G P P   PT
Sbjct: 1324 PGTPPPKGAPT 1334



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 71/255 (27%), Positives = 85/255 (33%), Gaps = 36/255 (14%)

Query: 207  PEDKGDPEGPEAGGAEQKAASGCERLQGPPT-PAGK--ETEGSLSDSDFKEPPSEGRLDA 263
            P  KG P  P A     K        +G PT PA      +G L+    K  P+     A
Sbjct: 1143 PPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTT---PA 1199

Query: 264  LQGPPRTGG---PSPAGPAAARLAEDPAPH------YPAGAP----APGPHPAAGEVPPG 310
               P   GG   PSP G      A  P+P        P GAP    A  P P  G   P 
Sbjct: 1200 ATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPP 1259

Query: 311  PGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGN---EGSPCPPCPGPIA 367
            P G     +  PP     LA P        A  +     GG      +G+P PP   P +
Sbjct: 1260 PKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPS 1319

Query: 368  GQALGGSRASPAPAPSRSPSAQC-PFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPG 426
             +   GS  +P P  + +P A   P P GT          P  P  T     G       
Sbjct: 1320 PK---GSPGTPPPKGAPTPPAVTPPSPKGT----------PTLPATTPSSKGGPTTPSSK 1366

Query: 427  PGPGPTTGPGSHFNG 441
             GP P     SH  G
Sbjct: 1367 EGPTPPAATPSHKGG 1381



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 59/249 (23%), Positives = 74/249 (29%), Gaps = 54/249 (21%)

Query: 234  GPPTPAGK-ETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYP 292
            GP TP G   +  S  ++ F    S     +   P  T  P+P  P  A       P  P
Sbjct: 816  GPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPSAVTPLSP 875

Query: 293  AGAPAPG-----------PHPAAGEVPPGP----------GGPSVIHSPP---------- 321
             G   P            P P  G   P P            P    + P          
Sbjct: 876  KGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPS 935

Query: 322  ----PPPPPAVLAKPK--------LWSLAEIATSSDKVKDGGG--GNEGSPCPPC---PG 364
                P PP A    PK         W+    A +    K G      +G+P PP    P 
Sbjct: 936  PKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPS 995

Query: 365  PIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGH 424
            P  G A    + +P P     P+   P P G+  + P    A   P  T     G     
Sbjct: 996  PKGGPATPSPKGAPTP-----PAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAAT 1050

Query: 425  PGPGPGPTT 433
            P P   PTT
Sbjct: 1051 PLPKGAPTT 1059



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 54/202 (26%), Positives = 74/202 (36%), Gaps = 30/202 (14%)

Query: 204  PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263
            P  P  KGDP  P       K A        P TP  +E   + S  D   PP+   +  
Sbjct: 1393 PAIPSPKGDPTSPAVIPLSPKKA--------PATPVTREGAATPSKGDLT-PPAVTPVSL 1443

Query: 264  LQGPPRT---GGPS-------PAGPAAARLA--EDPAPHYPAGAPAPGPHPAAGEVPPGP 311
             + P  +   GGP+       P  PA    +  E PAP   A + +P   PA       P
Sbjct: 1444 KKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAP 1503

Query: 312  GGPSVIHSPPP--PPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPC---PGPI 366
              P+VI S P   P  P+    P    +A  AT   K        + +  PP    P P 
Sbjct: 1504 TLPAVIPSSPKEVPATPSSRRDP----IAPTATLLSKKTPATLAPKEALIPPAMTVPSPK 1559

Query: 367  AGQALGGSRASPAPAPSRSPSA 388
               A+   + +PA   S+  S+
Sbjct: 1560 KTPAIPTPKEAPATPSSKEASS 1581



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 46/173 (26%), Positives = 60/173 (34%), Gaps = 27/173 (15%)

Query: 233  QGPPTPAGKETEG--SLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPH 290
            + P TP+ KE     +++ S +K  PS   L     PP    PSP           P+P 
Sbjct: 1569 EAPATPSSKEASSPPAVTPSTYKGAPSPKELLI---PPAVTSPSPKEAPTPPAVTPPSPE 1625

Query: 291  YPAGAPAPGPHPAAGEVPP-----GPGGPSVIHS-------------PPPPPPPA---VL 329
                 PAP   P +  V P      P  P+ +               P    P A   VL
Sbjct: 1626 KGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPTALKEVL 1685

Query: 330  AKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAP 382
              P   S   I   + K       +  SP P CP P A     G  ++ APAP
Sbjct: 1686 VAPAPESTPIITAPTRKGPQTKKSSATSP-PICPDPSAKNGSKGPLSTVAPAP 1737



 Score = 38.1 bits (87), Expect = 0.018
 Identities = 43/192 (22%), Positives = 52/192 (27%), Gaps = 20/192 (10%)

Query: 204  PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263
            P     KG P  P A     K + G    +G PTP                PPS      
Sbjct: 1301 PATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVT------------PPSPKGTPT 1348

Query: 264  LQG--PPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPP 321
            L    P   GGP+              P +  G     P P  G   P P G     +  
Sbjct: 1349 LPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVI 1408

Query: 322  PPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPA-- 379
            P  P    A P     A   +  D              P    P  G A   S+  P   
Sbjct: 1409 PLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLP 1468

Query: 380  ----PAPSRSPS 387
                P+P   P+
Sbjct: 1469 AVTPPSPKEPPA 1480



 Score = 32.3 bits (72), Expect = 0.99
 Identities = 65/251 (25%), Positives = 77/251 (30%), Gaps = 49/251 (19%)

Query: 237 TPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTG-----GPSPAGPAAARLAEDPAPHY 291
           T A    EG++S +    P  EG L  L   P         PSP    A       AP  
Sbjct: 671 TTASPFLEGTVSLAPKNHPVKEGTLTTLPLVPTASENCPVAPSPQNTCAPLATLVLAPEI 730

Query: 292 PAGAPAPGPHPAAGEVPPG--------------PGGPSVIHSPPPPPPPAVLAKPK--LW 335
           P   P+P   PA    PPG              P   S    P      +  A  K  L 
Sbjct: 731 PKSVPSPSLPPAG--TPPGTKKVDGISHTSALAPVASSPKECPTEDSGASATASSKGTLT 788

Query: 336 SLAEI----------ATSSDKVKDGGG------GNEGSPCPPCPG---PIAGQALGGSRA 376
            LA+            T     K G        GN  SP  P      P    +  GS+ 
Sbjct: 789 YLADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKD 848

Query: 377 SPAPAPSRSPSAQ--CPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTG 434
           SPA   S +P +    P P       P   T P  P  T   S  +L   P P  GP T 
Sbjct: 849 SPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLP--PKETPTPSVVNL---PFPKEGPATP 903

Query: 435 PGSHFNGLNQT 445
                  L+ T
Sbjct: 904 APKQAPALSMT 914


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
            sapiens]
          Length = 1751

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 74/270 (27%), Positives = 93/270 (34%), Gaps = 49/270 (18%)

Query: 198  KNDEDEPQKPEDKGDPEG---PEAG--GAEQKAASGCERLQGPPTPAGKETEGSLSDSDF 252
            K +   P    +KG+P     P+ G  G  QK A G    +GPP P G+   G   +  F
Sbjct: 1165 KGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRP--GYKGEIGF 1222

Query: 253  KEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA--------------P 298
               P    ++ L+G     G +  G     +   P P  P G P               P
Sbjct: 1223 PGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRP 1282

Query: 299  GPHPAAG-EVPPGPGGPSVIHSPPPPPPPAVL--------AKPKLWSLAEIATSSDKVKD 349
            GP    G + PPGP G      PP PP              K +     +     ++ + 
Sbjct: 1283 GPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEP 1342

Query: 350  GGGGNEGSPCPPCPGPIAGQALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPLYYTAPF 408
            GGGG  GS  P  PGP       G R  P  P P        P P G           P 
Sbjct: 1343 GGGGFFGSSLPGPPGP------PGPRGYPGIPGPKGESIRGQPGPPG-----------PQ 1385

Query: 409  YPGYTNYGSFGHLHGHPGPGPGPTTGPGSH 438
             P    Y       G PGP PGP + PG H
Sbjct: 1386 GPPGIGYEGRQGPPGPPGP-PGPPSFPGPH 1414



 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 77/251 (30%), Positives = 88/251 (35%), Gaps = 40/251 (15%)

Query: 212  DPEGPEAGGAEQKAASGCERLQGPPTPAG------KETEGSLSDSDFKEPPSEGRLDALQ 265
            D EG   GG + +A  G     GPP P G      +     ++ SD   P     +   +
Sbjct: 885  DMEGSGFGG-DLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 943

Query: 266  GPPRTGG-PSPAGPAAAR-----------LAEDPAPHYPAGAPAPGPHPAAGEV----PP 309
            GPP   G P P GP               L E  AP +     APGP  A GE      P
Sbjct: 944  GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP 1003

Query: 310  GPGGPSVIHSPPPPPPPAVLA--------KPKLWSLAEIATSSDKVKDGGGGNEGSP-CP 360
            GP GP     PP PP P + A            WS A  A    +   G  G +G P  P
Sbjct: 1004 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSA-DGPQGPPGLPGLKGDPGVP 1062

Query: 361  PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420
              PG        G    P   P R   A    P G   SR         PG    G  G 
Sbjct: 1063 GLPGAKGEVGADGVPGFPG-LPGREGIAGPQGPKGDRGSR----GEKGDPGKDGVGQPG- 1116

Query: 421  LHGHPGPGPGP 431
            L G PGP PGP
Sbjct: 1117 LPGPPGP-PGP 1126



 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 80/332 (24%), Positives = 112/332 (33%), Gaps = 82/332 (24%)

Query: 30   GPRTDELGRSSSGSAFSPYAGSTA-----------FTAPS-----PGYNSHLQYGADPAA 73
            GP+ +   +   GS FSP  G+             F  P      PGY   + +   P  
Sbjct: 1172 GPKGE---KGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 1228

Query: 74   AAAAAFSSYVGSPYDHTPG--MAGSLGYHPYAAPLGSYPYGDPAYRKNATRDATATLKAW 131
                      G P D + G  M G  G  P   P    P G P Y  N   +++      
Sbjct: 1229 PGMNGLKGEKGEPGDASLGFGMRGMPG--PPGPPGPPGPPGTPVYDSNVFAESSRPGPPG 1286

Query: 132  LNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNRSEDEEEE 191
            L  ++  P P KG                      A+  +         P +  + E E 
Sbjct: 1287 LPGNQGPPGP-KG----------------------AKGEVGPPGPPGQFPFDFLQLEAEM 1323

Query: 192  ENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSD 251
            +    EK D  +  +  ++G+P G    G+          L GPP P G      +    
Sbjct: 1324 KG---EKGDRGDAGQKGERGEPGGGGFFGSS---------LPGPPGPPGPRGYPGI---- 1367

Query: 252  FKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA----PGPHPAAGEV 307
               P  +G  ++++G P  G P P GP          P  P G P     PGPH     V
Sbjct: 1368 ---PGPKG--ESIRGQP--GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISV 1420

Query: 308  PPGPGGPSVIHSPPPPPPPAVLAKP---KLWS 336
             PGP GP     P PP PP  +      +LW+
Sbjct: 1421 -PGPPGP-----PGPPGPPGTMGASSGVRLWA 1446



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 70/243 (28%), Positives = 78/243 (32%), Gaps = 63/243 (25%)

Query: 237 TPAGKETEGSLSDSDFKE--PPSEGRLD-----ALQGPPRTGGP-SPAGPAAARLAEDPA 288
           TP G+  EG L     +   P   GR        L GPP    P SP GPA   L   P 
Sbjct: 743 TPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPG 802

Query: 289 PHYPAGAPAPGPHPAA-GEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKV 347
           P  P G P     P   GE    PG P     P    P      P      ++    DK 
Sbjct: 803 PQGPPGPPGRDGTPGRDGE----PGDPGEDGKPGDTGPQGFPGTP-----GDVGPKGDKG 853

Query: 348 KDGGG-----GNEGSPCPPCPG---------PIAG-------QALGGSRASPA-PAPSRS 385
             G G     G +G P PP P           + G       +AL G R  P  P P   
Sbjct: 854 DPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGV 913

Query: 386 P------------SAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTT 433
           P            S+  P P G           P  PG      F  L G PGP PG   
Sbjct: 914 PGLPGEPGRFGVNSSDVPGPAG----------LPGVPGREGPPGFPGLPGPPGP-PGREG 962

Query: 434 GPG 436
            PG
Sbjct: 963 PPG 965



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 68/239 (28%), Positives = 78/239 (32%), Gaps = 34/239 (14%)

Query: 204  PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSD-SDFKEPPSEGRLD 262
            PQ P  KGD       G   K   G   L GPP P G     S  D S    P  EGR  
Sbjct: 1091 PQGP--KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR-- 1146

Query: 263  ALQGPPRTGGPSPAGPAAARLAE----DPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIH 318
                P   G P PAGP     ++     P P    G P     P  G +  GP       
Sbjct: 1147 ----PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGAL--GPAQKGAKG 1200

Query: 319  SPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALG-GSRAS 377
             P    PP    +P      EI       + G  G +G    P        +LG G R  
Sbjct: 1201 EPGFRGPPGPYGRPGY--KGEIGFPGRPGRPGMNGLKGEKGEP-----GDASLGFGMRGM 1253

Query: 378  PAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436
            P P     P    P P GT +     +     PG         L G+ GP PGP    G
Sbjct: 1254 PGPPGPPGP----PGPPGTPVYDSNVFAESSRPGPPG------LPGNQGP-PGPKGAKG 1301


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1336

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 74/270 (27%), Positives = 93/270 (34%), Gaps = 49/270 (18%)

Query: 198 KNDEDEPQKPEDKGDPEG---PEAG--GAEQKAASGCERLQGPPTPAGKETEGSLSDSDF 252
           K +   P    +KG+P     P+ G  G  QK A G    +GPP P G+   G   +  F
Sbjct: 750 KGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRP--GYKGEIGF 807

Query: 253 KEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA--------------P 298
              P    ++ L+G     G +  G     +   P P  P G P               P
Sbjct: 808 PGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRP 867

Query: 299 GPHPAAG-EVPPGPGGPSVIHSPPPPPPPAVL--------AKPKLWSLAEIATSSDKVKD 349
           GP    G + PPGP G      PP PP              K +     +     ++ + 
Sbjct: 868 GPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEP 927

Query: 350 GGGGNEGSPCPPCPGPIAGQALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPLYYTAPF 408
           GGGG  GS  P  PGP       G R  P  P P        P P G           P 
Sbjct: 928 GGGGFFGSSLPGPPGP------PGPRGYPGIPGPKGESIRGQPGPPG-----------PQ 970

Query: 409 YPGYTNYGSFGHLHGHPGPGPGPTTGPGSH 438
            P    Y       G PGP PGP + PG H
Sbjct: 971 GPPGIGYEGRQGPPGPPGP-PGPPSFPGPH 999



 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 77/251 (30%), Positives = 88/251 (35%), Gaps = 40/251 (15%)

Query: 212 DPEGPEAGGAEQKAASGCERLQGPPTPAG------KETEGSLSDSDFKEPPSEGRLDALQ 265
           D EG   GG + +A  G     GPP P G      +     ++ SD   P     +   +
Sbjct: 470 DMEGSGFGG-DLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 528

Query: 266 GPPRTGG-PSPAGPAAAR-----------LAEDPAPHYPAGAPAPGPHPAAGEV----PP 309
           GPP   G P P GP               L E  AP +     APGP  A GE      P
Sbjct: 529 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP 588

Query: 310 GPGGPSVIHSPPPPPPPAVLA--------KPKLWSLAEIATSSDKVKDGGGGNEGSP-CP 360
           GP GP     PP PP P + A            WS A  A    +   G  G +G P  P
Sbjct: 589 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSA-DGPQGPPGLPGLKGDPGVP 647

Query: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420
             PG        G    P   P R   A    P G   SR         PG    G  G 
Sbjct: 648 GLPGAKGEVGADGVPGFPG-LPGREGIAGPQGPKGDRGSR----GEKGDPGKDGVGQPG- 701

Query: 421 LHGHPGPGPGP 431
           L G PGP PGP
Sbjct: 702 LPGPPGP-PGP 711



 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 80/332 (24%), Positives = 112/332 (33%), Gaps = 82/332 (24%)

Query: 30   GPRTDELGRSSSGSAFSPYAGSTA-----------FTAPS-----PGYNSHLQYGADPAA 73
            GP+ +   +   GS FSP  G+             F  P      PGY   + +   P  
Sbjct: 757  GPKGE---KGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 813

Query: 74   AAAAAFSSYVGSPYDHTPG--MAGSLGYHPYAAPLGSYPYGDPAYRKNATRDATATLKAW 131
                      G P D + G  M G  G  P   P    P G P Y  N   +++      
Sbjct: 814  PGMNGLKGEKGEPGDASLGFGMRGMPG--PPGPPGPPGPPGTPVYDSNVFAESSRPGPPG 871

Query: 132  LNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNRSEDEEEE 191
            L  ++  P P KG                      A+  +         P +  + E E 
Sbjct: 872  LPGNQGPPGP-KG----------------------AKGEVGPPGPPGQFPFDFLQLEAEM 908

Query: 192  ENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSD 251
            +    EK D  +  +  ++G+P G    G+          L GPP P G      +    
Sbjct: 909  KG---EKGDRGDAGQKGERGEPGGGGFFGSS---------LPGPPGPPGPRGYPGI---- 952

Query: 252  FKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA----PGPHPAAGEV 307
               P  +G  ++++G P  G P P GP          P  P G P     PGPH     V
Sbjct: 953  ---PGPKG--ESIRGQP--GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISV 1005

Query: 308  PPGPGGPSVIHSPPPPPPPAVLAKP---KLWS 336
             PGP GP     P PP PP  +      +LW+
Sbjct: 1006 -PGPPGP-----PGPPGPPGTMGASSGVRLWA 1031



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 70/243 (28%), Positives = 78/243 (32%), Gaps = 63/243 (25%)

Query: 237 TPAGKETEGSLSDSDFKE--PPSEGRLD-----ALQGPPRTGGP-SPAGPAAARLAEDPA 288
           TP G+  EG L     +   P   GR        L GPP    P SP GPA   L   P 
Sbjct: 328 TPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPG 387

Query: 289 PHYPAGAPAPGPHPAA-GEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKV 347
           P  P G P     P   GE    PG P     P    P      P      ++    DK 
Sbjct: 388 PQGPPGPPGRDGTPGRDGE----PGDPGEDGKPGDTGPQGFPGTP-----GDVGPKGDKG 438

Query: 348 KDGGG-----GNEGSPCPPCPG---------PIAG-------QALGGSRASPA-PAPSRS 385
             G G     G +G P PP P           + G       +AL G R  P  P P   
Sbjct: 439 DPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGV 498

Query: 386 P------------SAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTT 433
           P            S+  P P G           P  PG      F  L G PGP PG   
Sbjct: 499 PGLPGEPGRFGVNSSDVPGPAG----------LPGVPGREGPPGFPGLPGPPGP-PGREG 547

Query: 434 GPG 436
            PG
Sbjct: 548 PPG 550



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 68/239 (28%), Positives = 78/239 (32%), Gaps = 34/239 (14%)

Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSD-SDFKEPPSEGRLD 262
           PQ P  KGD       G   K   G   L GPP P G     S  D S    P  EGR  
Sbjct: 676 PQGP--KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR-- 731

Query: 263 ALQGPPRTGGPSPAGPAAARLAE----DPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIH 318
               P   G P PAGP     ++     P P    G P     P  G +  GP       
Sbjct: 732 ----PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGAL--GPAQKGAKG 785

Query: 319 SPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALG-GSRAS 377
            P    PP    +P      EI       + G  G +G    P        +LG G R  
Sbjct: 786 EPGFRGPPGPYGRPGY--KGEIGFPGRPGRPGMNGLKGEKGEP-----GDASLGFGMRGM 838

Query: 378 PAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436
           P P     P    P P GT +     +     PG         L G+ GP PGP    G
Sbjct: 839 PGPPGPPGP----PGPPGTPVYDSNVFAESSRPGPPG------LPGNQGP-PGPKGAKG 886


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
            sapiens]
          Length = 1516

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 74/270 (27%), Positives = 93/270 (34%), Gaps = 49/270 (18%)

Query: 198  KNDEDEPQKPEDKGDPEG---PEAG--GAEQKAASGCERLQGPPTPAGKETEGSLSDSDF 252
            K +   P    +KG+P     P+ G  G  QK A G    +GPP P G+   G   +  F
Sbjct: 930  KGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRP--GYKGEIGF 987

Query: 253  KEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA--------------P 298
               P    ++ L+G     G +  G     +   P P  P G P               P
Sbjct: 988  PGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRP 1047

Query: 299  GPHPAAG-EVPPGPGGPSVIHSPPPPPPPAVL--------AKPKLWSLAEIATSSDKVKD 349
            GP    G + PPGP G      PP PP              K +     +     ++ + 
Sbjct: 1048 GPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEP 1107

Query: 350  GGGGNEGSPCPPCPGPIAGQALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPLYYTAPF 408
            GGGG  GS  P  PGP       G R  P  P P        P P G           P 
Sbjct: 1108 GGGGFFGSSLPGPPGP------PGPRGYPGIPGPKGESIRGQPGPPG-----------PQ 1150

Query: 409  YPGYTNYGSFGHLHGHPGPGPGPTTGPGSH 438
             P    Y       G PGP PGP + PG H
Sbjct: 1151 GPPGIGYEGRQGPPGPPGP-PGPPSFPGPH 1179



 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 77/251 (30%), Positives = 88/251 (35%), Gaps = 40/251 (15%)

Query: 212 DPEGPEAGGAEQKAASGCERLQGPPTPAG------KETEGSLSDSDFKEPPSEGRLDALQ 265
           D EG   GG + +A  G     GPP P G      +     ++ SD   P     +   +
Sbjct: 650 DMEGSGFGG-DLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGRE 708

Query: 266 GPPRTGG-PSPAGPAAAR-----------LAEDPAPHYPAGAPAPGPHPAAGEV----PP 309
           GPP   G P P GP               L E  AP +     APGP  A GE      P
Sbjct: 709 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAP 768

Query: 310 GPGGPSVIHSPPPPPPPAVLA--------KPKLWSLAEIATSSDKVKDGGGGNEGSP-CP 360
           GP GP     PP PP P + A            WS A  A    +   G  G +G P  P
Sbjct: 769 GPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSA-DGPQGPPGLPGLKGDPGVP 827

Query: 361 PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420
             PG        G    P   P R   A    P G   SR         PG    G  G 
Sbjct: 828 GLPGAKGEVGADGVPGFPG-LPGREGIAGPQGPKGDRGSR----GEKGDPGKDGVGQPG- 881

Query: 421 LHGHPGPGPGP 431
           L G PGP PGP
Sbjct: 882 LPGPPGP-PGP 891



 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 80/332 (24%), Positives = 112/332 (33%), Gaps = 82/332 (24%)

Query: 30   GPRTDELGRSSSGSAFSPYAGSTA-----------FTAPS-----PGYNSHLQYGADPAA 73
            GP+ +   +   GS FSP  G+             F  P      PGY   + +   P  
Sbjct: 937  GPKGE---KGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGR 993

Query: 74   AAAAAFSSYVGSPYDHTPG--MAGSLGYHPYAAPLGSYPYGDPAYRKNATRDATATLKAW 131
                      G P D + G  M G  G  P   P    P G P Y  N   +++      
Sbjct: 994  PGMNGLKGEKGEPGDASLGFGMRGMPG--PPGPPGPPGPPGTPVYDSNVFAESSRPGPPG 1051

Query: 132  LNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRNRSEDEEEE 191
            L  ++  P P KG                      A+  +         P +  + E E 
Sbjct: 1052 LPGNQGPPGP-KG----------------------AKGEVGPPGPPGQFPFDFLQLEAEM 1088

Query: 192  ENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSD 251
            +    EK D  +  +  ++G+P G    G+          L GPP P G      +    
Sbjct: 1089 KG---EKGDRGDAGQKGERGEPGGGGFFGSS---------LPGPPGPPGPRGYPGI---- 1132

Query: 252  FKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPA----PGPHPAAGEV 307
               P  +G  ++++G P  G P P GP          P  P G P     PGPH     V
Sbjct: 1133 ---PGPKG--ESIRGQP--GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISV 1185

Query: 308  PPGPGGPSVIHSPPPPPPPAVLAKP---KLWS 336
             PGP GP     P PP PP  +      +LW+
Sbjct: 1186 -PGPPGP-----PGPPGPPGTMGASSGVRLWA 1211



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 70/243 (28%), Positives = 78/243 (32%), Gaps = 63/243 (25%)

Query: 237 TPAGKETEGSLSDSDFKE--PPSEGRLD-----ALQGPPRTGGP-SPAGPAAARLAEDPA 288
           TP G+  EG L     +   P   GR        L GPP    P SP GPA   L   P 
Sbjct: 508 TPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPG 567

Query: 289 PHYPAGAPAPGPHPAA-GEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKV 347
           P  P G P     P   GE    PG P     P    P      P      ++    DK 
Sbjct: 568 PQGPPGPPGRDGTPGRDGE----PGDPGEDGKPGDTGPQGFPGTP-----GDVGPKGDKG 618

Query: 348 KDGGG-----GNEGSPCPPCPG---------PIAG-------QALGGSRASPA-PAPSRS 385
             G G     G +G P PP P           + G       +AL G R  P  P P   
Sbjct: 619 DPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGV 678

Query: 386 P------------SAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTT 433
           P            S+  P P G           P  PG      F  L G PGP PG   
Sbjct: 679 PGLPGEPGRFGVNSSDVPGPAG----------LPGVPGREGPPGFPGLPGPPGP-PGREG 727

Query: 434 GPG 436
            PG
Sbjct: 728 PPG 730



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 68/239 (28%), Positives = 78/239 (32%), Gaps = 34/239 (14%)

Query: 204  PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSD-SDFKEPPSEGRLD 262
            PQ P  KGD       G   K   G   L GPP P G     S  D S    P  EGR  
Sbjct: 856  PQGP--KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGR-- 911

Query: 263  ALQGPPRTGGPSPAGPAAARLAE----DPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIH 318
                P   G P PAGP     ++     P P    G P     P  G +  GP       
Sbjct: 912  ----PGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGAL--GPAQKGAKG 965

Query: 319  SPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALG-GSRAS 377
             P    PP    +P      EI       + G  G +G    P        +LG G R  
Sbjct: 966  EPGFRGPPGPYGRPGY--KGEIGFPGRPGRPGMNGLKGEKGEP-----GDASLGFGMRGM 1018

Query: 378  PAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436
            P P     P    P P GT +     +     PG         L G+ GP PGP    G
Sbjct: 1019 PGPPGPPGP----PGPPGTPVYDSNVFAESSRPGPPG------LPGNQGP-PGPKGAKG 1066


>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
           sapiens]
          Length = 309

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 60/212 (28%), Positives = 73/212 (34%), Gaps = 19/212 (8%)

Query: 207 PEDKGDPEG--PEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKE-PPSEGRLDA 263
           P   G PEG  P+ G   Q       + +GPP   G +++G        E PP +G   +
Sbjct: 93  PPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQS 152

Query: 264 LQGPPRTGGPSPAGPAAARLAEDPAPH--YPAGAP--------APGPHPAAGEVPPGPGG 313
              PPR G P    P     ++ P PH   P G P         P P P   E PP  GG
Sbjct: 153 QGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGG 212

Query: 314 PSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGG----GGNEGSPCPPCPGPIAGQ 369
                  PPP P      P               K  G     GN+    PP   P    
Sbjct: 213 NQ--SQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPP 270

Query: 370 ALGGSRASPAPAPSRSPSAQCPFPGGTVLSRP 401
             GG+   P P P+  P    P P G    RP
Sbjct: 271 PPGGNPQQPLPPPAGKPQGPPPPPQGGRPHRP 302



 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 75/266 (28%), Positives = 92/266 (34%), Gaps = 51/266 (19%)

Query: 185 SEDEEEEENIDLEKNDEDEPQKPEDKGDPEG--PEAGGAEQKAASGCERLQGPPTPAGKE 242
           +ED  +EE+  +    + E ++P+    P+   P  G  E +   G  + QGPP   GK 
Sbjct: 20  NEDVSQEESPSVISG-KPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKP 78

Query: 243 TEGSLSDSDFKEPPSEGRLDALQGP-PRTGGPSPAGPAAARLAEDPAPH--YPAGAP--- 296
            EG         PP +G   + QGP PR G P    P     ++ P P    P G P   
Sbjct: 79  -EG---------PPPQGGNQS-QGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQG 127

Query: 297 -----APGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGG 351
                 P P P   E PP  GG     S  PPP P     P                   
Sbjct: 128 GNQSQGPPPRPGKPEGPPPQGGN---QSQGPPPRPGKPEGP----------------PPQ 168

Query: 352 GGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPG 411
           GGN+    PP PG   G    G   S  P P        P  GG     P     P  PG
Sbjct: 169 GGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP-----PPRPG 223

Query: 412 YTN--YGSFGHLHGHPGPGPGPTTGP 435
                    G+    P P PG   GP
Sbjct: 224 KPEGPPSQGGNKPQGPPPHPGKPQGP 249



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 41/122 (33%), Positives = 46/122 (37%), Gaps = 34/122 (27%)

Query: 207 PEDKGDPEGP--EAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDAL 264
           P   G PEGP  + G   Q       + QGPP   G + +          PP  GR    
Sbjct: 219 PPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQ---------RPPPPGR---P 266

Query: 265 QGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPP 324
           QGPP  GG            + P P  PAG P  GP P     PP  G P   H PP   
Sbjct: 267 QGPPPPGGN----------PQQPLPP-PAGKP-QGPPP-----PPQGGRP---HRPPQGQ 306

Query: 325 PP 326
           PP
Sbjct: 307 PP 308



 Score = 30.0 bits (66), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 202 DEPQKPEDKGDPEG--PEAGGAEQKAASGCERLQGPPTP 238
           ++PQ+P   G P+G  P  G  +Q       + QGPP P
Sbjct: 255 NKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPP 293


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 75/292 (25%), Positives = 96/292 (32%), Gaps = 49/292 (16%)

Query: 185 SEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETE 244
           SE E EE N   +   E E  +P+   D +  +        +S    +        + T 
Sbjct: 77  SESESEETNAPKKTKTEQELPRPQSPSDLDSLDGRSLNDDGSSDPRDIDQD----NRSTS 132

Query: 245 GSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGA--PAPGPHP 302
            S+      E  S+      QGP R   P P  P + +   D  P  P  +  P P   P
Sbjct: 133 PSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFPPSPQ-PPDSTPRQPEASFEPHPSVTP 191

Query: 303 AAGEVPPGPGGPSVIHSPPPPPPP----------AVLAKPKLWSLAEIATSSDKVKDGGG 352
                P  P    +  +PP  PPP           VL+ P +      A SS      GG
Sbjct: 192 TGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSGPPMGPKGGGAASSV-----GG 246

Query: 353 GNEGSPCPPCPGPIAGQALGGSRASP---------------APAPSRSPSAQCPFPGGTV 397
            N G   PP   PI+  + G S A P               AP P+  P      P    
Sbjct: 247 PNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPA 306

Query: 398 LSRPLYYTAPFYPGYTNYGSFGHLHG-----------HPGPGPGPTTGPGSH 438
           L RPL   +   PG       GHL              PGP  GPT  P  H
Sbjct: 307 L-RPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPH 357



 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 76/258 (29%), Positives = 93/258 (36%), Gaps = 48/258 (18%)

Query: 211 GDPEGPEAGGAEQKAASGCERLQGPP--TPAGKETEGSLSDSDFKEPPSE---GRLDALQ 265
           G P GP+ GGA           Q PP  TP    + G+      K P +    G L +  
Sbjct: 230 GPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAP 289

Query: 266 GP---PRTGGPSPAGPAAARLAEDPAPHYPAGA-PAPG--PHPAA-----GEVPPGP-GG 313
            P   P      P  PA   L    A     GA P PG  P P A     G +PPGP  G
Sbjct: 290 PPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKG 349

Query: 314 PSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGG 373
           P++  SP   PP +  A          ++SS         +  S                
Sbjct: 350 PTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSS---------------- 393

Query: 374 SRASPAPAPSRSPSAQCPFPGGTVLS---RPLYYTAPFYPGYTNYGS-------FGHL-- 421
           S ASP PA    PS    FP  T LS   +P  YT P  P    +         +G L  
Sbjct: 394 SSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLA 453

Query: 422 --HGHPGPGPGPTTGPGS 437
             + HPGP P P+TG  S
Sbjct: 454 NSNAHPGPFP-PSTGAQS 470



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 42/155 (27%), Positives = 54/155 (34%), Gaps = 34/155 (21%)

Query: 235 PPTPAGKETEGSLSD--SDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPA---- 288
           PP P    +  +LS   +     P+  +  +  GPP  G  +P+ P A + A  P     
Sbjct: 602 PPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPS-PGAYKTATPPGYKPG 660

Query: 289 ----------PHYPAGAPAPGP------HPAAGEVPPGPGGPSVIHSPPPPP------PP 326
                     P Y   +P  GP       P  G  P  P GPS + S PPPP      PP
Sbjct: 661 SPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASGPP 720

Query: 327 AVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP 361
               + K     E  T    V         SP PP
Sbjct: 721 LSATQIKQEPAEEYETPESPVPPA-----RSPSPP 750



 Score = 34.3 bits (77), Expect = 0.26
 Identities = 50/228 (21%), Positives = 72/228 (31%), Gaps = 23/228 (10%)

Query: 218 AGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAG 277
           +  A   ++S        P PA +    +L       PP      + Q P  T    P+ 
Sbjct: 380 SSSAAASSSSSSSSSSASPFPASQ----ALPSYPHSFPPPTSLSVSNQPPKYT---QPSL 432

Query: 278 PAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSL 337
           P+ A  ++ P P  P G      +   G  PP  G  S  H      PP           
Sbjct: 433 PSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAH------PPVSTHHHHHQQQ 486

Query: 338 AEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAP-APSRSPSAQCPFPGGT 396
            +      + +     + G+  PP PG       GGS     P A S S  +  P+P G 
Sbjct: 487 QQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGP 546

Query: 397 VLSRPLYY---------TAPFYPGYTNYGSFGHLHGHPGPGPGPTTGP 435
               P +            P     +N  S      +P   P P+ GP
Sbjct: 547 AHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGP 594



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 13/75 (17%)

Query: 266 GPPRTG-GP-SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGP-SVIHSPPP 322
           G P  G GP  PAGP+       P+   P  APA GP  +A ++   P        SP P
Sbjct: 688 GSPTVGPGPLPPAGPSGL-----PSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVP 742

Query: 323 P-----PPPAVLAKP 332
           P     PPP V+  P
Sbjct: 743 PARSPSPPPKVVDVP 757


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 75/292 (25%), Positives = 96/292 (32%), Gaps = 49/292 (16%)

Query: 185 SEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETE 244
           SE E EE N   +   E E  +P+   D +  +        +S    +        + T 
Sbjct: 77  SESESEETNAPKKTKTEQELPRPQSPSDLDSLDGRSLNDDGSSDPRDIDQD----NRSTS 132

Query: 245 GSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGA--PAPGPHP 302
            S+      E  S+      QGP R   P P  P + +   D  P  P  +  P P   P
Sbjct: 133 PSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFPPSPQ-PPDSTPRQPEASFEPHPSVTP 191

Query: 303 AAGEVPPGPGGPSVIHSPPPPPPP----------AVLAKPKLWSLAEIATSSDKVKDGGG 352
                P  P    +  +PP  PPP           VL+ P +      A SS      GG
Sbjct: 192 TGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSGPPMGPKGGGAASSV-----GG 246

Query: 353 GNEGSPCPPCPGPIAGQALGGSRASP---------------APAPSRSPSAQCPFPGGTV 397
            N G   PP   PI+  + G S A P               AP P+  P      P    
Sbjct: 247 PNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPA 306

Query: 398 LSRPLYYTAPFYPGYTNYGSFGHLHG-----------HPGPGPGPTTGPGSH 438
           L RPL   +   PG       GHL              PGP  GPT  P  H
Sbjct: 307 L-RPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPH 357



 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 76/258 (29%), Positives = 93/258 (36%), Gaps = 48/258 (18%)

Query: 211 GDPEGPEAGGAEQKAASGCERLQGPP--TPAGKETEGSLSDSDFKEPPSE---GRLDALQ 265
           G P GP+ GGA           Q PP  TP    + G+      K P +    G L +  
Sbjct: 230 GPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAP 289

Query: 266 GP---PRTGGPSPAGPAAARLAEDPAPHYPAGA-PAPG--PHPAA-----GEVPPGP-GG 313
            P   P      P  PA   L    A     GA P PG  P P A     G +PPGP  G
Sbjct: 290 PPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKG 349

Query: 314 PSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGG 373
           P++  SP   PP +  A          ++SS         +  S                
Sbjct: 350 PTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSS---------------- 393

Query: 374 SRASPAPAPSRSPSAQCPFPGGTVLS---RPLYYTAPFYPGYTNYGS-------FGHL-- 421
           S ASP PA    PS    FP  T LS   +P  YT P  P    +         +G L  
Sbjct: 394 SSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLA 453

Query: 422 --HGHPGPGPGPTTGPGS 437
             + HPGP P P+TG  S
Sbjct: 454 NSNAHPGPFP-PSTGAQS 470



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 42/155 (27%), Positives = 54/155 (34%), Gaps = 34/155 (21%)

Query: 235 PPTPAGKETEGSLSD--SDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPA---- 288
           PP P    +  +LS   +     P+  +  +  GPP  G  +P+ P A + A  P     
Sbjct: 602 PPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPS-PGAYKTATPPGYKPG 660

Query: 289 ----------PHYPAGAPAPGP------HPAAGEVPPGPGGPSVIHSPPPPP------PP 326
                     P Y   +P  GP       P  G  P  P GPS + S PPPP      PP
Sbjct: 661 SPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASGPP 720

Query: 327 AVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP 361
               + K     E  T    V         SP PP
Sbjct: 721 LSATQIKQEPAEEYETPESPVPPA-----RSPSPP 750



 Score = 34.3 bits (77), Expect = 0.26
 Identities = 50/228 (21%), Positives = 72/228 (31%), Gaps = 23/228 (10%)

Query: 218 AGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAG 277
           +  A   ++S        P PA +    +L       PP      + Q P  T    P+ 
Sbjct: 380 SSSAAASSSSSSSSSSASPFPASQ----ALPSYPHSFPPPTSLSVSNQPPKYT---QPSL 432

Query: 278 PAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSL 337
           P+ A  ++ P P  P G      +   G  PP  G  S  H      PP           
Sbjct: 433 PSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQSTAH------PPVSTHHHHHQQQ 486

Query: 338 AEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAP-APSRSPSAQCPFPGGT 396
            +      + +     + G+  PP PG       GGS     P A S S  +  P+P G 
Sbjct: 487 QQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGP 546

Query: 397 VLSRPLYY---------TAPFYPGYTNYGSFGHLHGHPGPGPGPTTGP 435
               P +            P     +N  S      +P   P P+ GP
Sbjct: 547 AHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQGP 594



 Score = 31.2 bits (69), Expect = 2.2
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 13/75 (17%)

Query: 266 GPPRTG-GP-SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGP-SVIHSPPP 322
           G P  G GP  PAGP+       P+   P  APA GP  +A ++   P        SP P
Sbjct: 688 GSPTVGPGPLPPAGPSGL-----PSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVP 742

Query: 323 P-----PPPAVLAKP 332
           P     PPP V+  P
Sbjct: 743 PARSPSPPPKVVDVP 757


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 68/242 (28%), Positives = 84/242 (34%), Gaps = 58/242 (23%)

Query: 204 PQKPEDKGDPEGPEAGGAEQ-----------KAASGCERLQGPPTPAGKE----TEGSLS 248
           P  P+  G P GP+    E            K   G   +QGPP PAG+E      G   
Sbjct: 417 PSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPG 476

Query: 249 DSDFKEPPSEGRLDALQGPPRTGGPS-PAGPAAARLAEDPAPHYPAGAP----------- 296
            +    PP E      +G P   G + P GPA  R    P P  P G+P           
Sbjct: 477 PTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGER--GSPGPAGPKGSPGEAGRPGEAGL 534

Query: 297 -----------APGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSD 345
                      +PGP    G  PPGP G      P PP PP   A+ +   +        
Sbjct: 535 PGAKGLTGSPGSPGPDGKTG--PPGPAGQD--GRPGPPGPPG--ARGQAGVMGFPGPKGA 588

Query: 346 KVKDGGGGNEGSPCPP-CPGPIAGQALGGSRASPAPA----------PSRSPSAQ-CPFP 393
             + G  G  G P PP   GP       G++  P PA          P+ SP  Q  P P
Sbjct: 589 AGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGP 648

Query: 394 GG 395
            G
Sbjct: 649 AG 650



 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 80/280 (28%), Positives = 103/280 (36%), Gaps = 55/280 (19%)

Query: 198 KNDED----EPQKPEDKGDPEGPEA-----------GGAEQKAASGCERLQGPPTPAGKE 242
           KN +D    +P +P ++G P GP+            G    +  SG +  +G   PAG +
Sbjct: 228 KNGDDGEAGKPGRPGERGPP-GPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPK 286

Query: 243 TE-GSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAAR-------LAEDPAPHYPAG 294
            E GS  ++      + G++     P   G P   GPA AR        A  P P  PAG
Sbjct: 287 GEPGSPGENG-----APGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAG 341

Query: 295 APA-PGPHPAAGEVPP----GPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKD 349
            P  PG   A GE  P    G  GP  +   P PP PA  A P     A+      K  +
Sbjct: 342 PPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGAD-GQPGAKGAN 400

Query: 350 GGGGNEGSP-CPPCPGPIAGQALG------GSRASPAPAPSRSPSAQCPFPGGTVLSRPL 402
           G  G  G+P  P   GP   Q  G      G+   P    S+  +     PG   +  P 
Sbjct: 401 GAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGP- 459

Query: 403 YYTAPFYPGYTNYGSFGHLHGHPGP-----GPGPTTGPGS 437
                  PG           G PGP      PG   GPGS
Sbjct: 460 -------PGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS 492



 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 84/277 (30%), Positives = 96/277 (34%), Gaps = 68/277 (24%)

Query: 207  PEDKGD--PEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDAL 264
            P DKG+  P GP AG    + A G     GPP PAG           F  PP        
Sbjct: 778  PGDKGESGPSGP-AGPTGARGAPGDRGEPGPPGPAG-----------FAGPPGADGQPGA 825

Query: 265  QGPPRTGG-------PSPAGPAAARLAEDPAPHYPAGAP-APGPHPAAGEVPPG------ 310
            +G P   G       P PAGPA       P P    GAP A G   +AG  PPG      
Sbjct: 826  KGEPGDAGAKGDAGPPGPAGPAGP-----PGPIGNVGAPGAKGARGSAG--PPGATGFPG 878

Query: 311  ------PGGPSVIHSPPPPPPPA-------------VLAKP-KLWSLAEIATSSDKVKDG 350
                  P GPS    PP PP PA                +P ++        + +K   G
Sbjct: 879  AAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPG 938

Query: 351  GGGNEGSPCPPCPGPIAGQ-------ALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPL 402
              G  G+P  P P  IAGQ          G R  P  P PS  P  Q P  G +    P 
Sbjct: 939  ADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGP-SGASGERGPP 997

Query: 403  YYTAPFYPGYTNYGSFGHLHGHPGP--GPGPTTGPGS 437
                P  PG           G PG    PG    PG+
Sbjct: 998  GPMGP--PGLAGPPGESGREGAPGAEGSPGRDGSPGA 1032



 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 82/284 (28%), Positives = 96/284 (33%), Gaps = 67/284 (23%)

Query: 197 EKNDEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE-------TEGSLSD 249
           E     E   P D G P GP +G   ++   G   +QGPP PAG          +G+  D
Sbjct: 654 EAGKPGEQGVPGDLGAP-GP-SGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGD 711

Query: 250 SDFKEPPSEGRLDALQGPP----RTGGPSP------AGPAAA----------RLAEDPAP 289
           +     P       LQG P      G P P      AGP  A           L     P
Sbjct: 712 AGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGP 771

Query: 290 HYPAGAPA----PGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSD 345
             PAGAP      GP   AG  P G  G       P PP PA  A P             
Sbjct: 772 PGPAGAPGDKGESGPSGPAG--PTGARGAPGDRGEPGPPGPAGFAGPP----GADGQPGA 825

Query: 346 KVKDGGGGNEGSPCPP-------CPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVL 398
           K + G  G +G   PP        PGPI      G++ +     S  P     FPG    
Sbjct: 826 KGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARG---SAGPPGATGFPGAAGR 882

Query: 399 SRPLYYTAPFYPGYTNYGSFGHLHGHPGP-------GPGPTTGP 435
             P        PG +  G+ G   G PGP       GP   TGP
Sbjct: 883 VGP--------PGPS--GNAGP-PGPPGPAGKEGGKGPRGETGP 915



 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 74/251 (29%), Positives = 86/251 (34%), Gaps = 41/251 (16%)

Query: 223  QKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPP----RTGGPSPAG- 277
            Q+   G   L GP    GK+  G    S  + PP       L GPP    R G P   G 
Sbjct: 966  QRGERGFPGLPGPSGEPGKQ--GPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGS 1023

Query: 278  ------PAAARLAEDPAPHYPAGAP----APGPHPAAGEV----------PPGPGGPSVI 317
                  P A     +  P  P GAP    APGP   AG+           P GP GP   
Sbjct: 1024 PGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGA 1083

Query: 318  HSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRAS 377
              P  P  P            E     D+   G  G  G   PP P    G+   G   +
Sbjct: 1084 RGPAGPQGPR-------GDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQ--GPSGA 1134

Query: 378  PAPAPSRSPSAQCPFPGGTVLS-RPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPG 436
              PA  R P      PG   L+  P     P   G T  G  G + G PGP PGP   PG
Sbjct: 1135 SGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRT--GDAGPV-GPPGP-PGPPGPPG 1190

Query: 437  SHFNGLNQTVL 447
                G + + L
Sbjct: 1191 PPSAGFDFSFL 1201



 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 73/266 (27%), Positives = 87/266 (32%), Gaps = 56/266 (21%)

Query: 218  AGGAEQKAASGCERLQGPPTPAGKET-EGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPA 276
            AG       SG     GPP PAGKE  +G   ++     P E       GPP  G P PA
Sbjct: 880  AGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGE------VGPP--GPPGPA 931

Query: 277  GPAAARLAEDPA--PHYPA-----------------------GAPAP-------GPHPAA 304
            G   +  A+ PA  P  P                        G P P       GP  A+
Sbjct: 932  GEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGAS 991

Query: 305  GEV-PPGPGGPSVIHSPPPPP--PPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSP-CP 360
            GE  PPGP GP  +  PP       A  A+             D+ + G  G  G+P  P
Sbjct: 992  GERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAP 1051

Query: 361  PCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYP----GYTNYG 416
              PGP+      G R    PA    P       G      P             G   + 
Sbjct: 1052 GAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHR 1111

Query: 417  SFGHLHGHPGP-------GPGPTTGP 435
             F  L G PGP       GP   +GP
Sbjct: 1112 GFSGLQGPPGPPGSPGEQGPSGASGP 1137



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 78/273 (28%), Positives = 91/273 (33%), Gaps = 66/273 (24%)

Query: 214 EGPEAGGAEQKAASGCERLQGPPTPAGKETE----GSLSDSDFKEPPSEGRLDALQGPP- 268
           +GP  G   +  ASG    +GPP P GK  +    G       + PP       L G   
Sbjct: 202 QGPP-GEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAG 260

Query: 269 ---------------RTGGPSPAGPAA--ARLAEDPAPHY--PAGAP-------APGPHP 302
                            G   PAGP        E+ AP    P G P       APGP  
Sbjct: 261 LPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAG 320

Query: 303 AAGE-------VPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNE 355
           A G         PPGP GP    + PP  P AV AK       E      +  +G  G  
Sbjct: 321 ARGNDGATGAAGPPGPTGP----AGPPGFPGAVGAK------GEAGPQGPRGSEGPQGVR 370

Query: 356 GSPCPPCPGPIAGQA--------LGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAP 407
           G P PP P   AG A         G   A+ AP  + +P     FPG    S P     P
Sbjct: 371 GEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPG----FPGARGPSGPQGPGGP 426

Query: 408 FYPGYTN-----YGSFGHLHGHPGPGPGPTTGP 435
             P   +      GS G       PGP    GP
Sbjct: 427 PGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGP 459



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 43/126 (34%), Positives = 47/126 (37%), Gaps = 27/126 (21%)

Query: 204  PQKPE-DKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLD 262
            PQ P  DKG  E  E G    K   G   LQGPP P G   E                  
Sbjct: 1089 PQGPRGDKG--ETGEQGDRGIKGHRGFSGLQGPPGPPGSPGE------------------ 1128

Query: 263  ALQGPPRTGGPS-PAGP--AAARLAEDPAPHYPAGAPAPGPHPAAGEVPP-GPGGPSVIH 318
              QGP    GP+ P GP  +A    +D     P     PGP    G+  P GP GP    
Sbjct: 1129 --QGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPP 1186

Query: 319  SPPPPP 324
             PP PP
Sbjct: 1187 GPPGPP 1192



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 67/237 (28%), Positives = 80/237 (33%), Gaps = 48/237 (20%)

Query: 229 CERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPA 288
           C+  +  P     E E      D  E P++     ++GP    GP               
Sbjct: 75  CDETKNCPGAEVPEGECCPVCPDGSESPTDQETTGVEGPKGDTGPR-------------G 121

Query: 289 PHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAV---LAKPKLWSLAEIATSSD 345
           P  PAG P     P    +P GP GP     P PP PP +    A    +   E +T   
Sbjct: 122 PRGPAGPPGRDGIPGQPGLP-GPPGP-----PGPPGPPGLGGNFAPQLSYGYDEKSTGGI 175

Query: 346 KVKD--GGGGNEGSPCPP-CPGPIAGQ----------ALG--GSRASPAPAPSRSPSAQC 390
            V    G  G  G P PP  PGP   Q          A G  G R  P P        + 
Sbjct: 176 SVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEA 235

Query: 391 PFPG--------GTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPG-PGP-GPTTGPGS 437
             PG        G   +R L  TA   PG   +  F  L G  G  GP GP   PGS
Sbjct: 236 GKPGRPGERGPPGPQGARGLPGTAGL-PGMKGHRGFSGLDGAKGDAGPAGPKGEPGS 291



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 47/171 (27%), Positives = 53/171 (30%), Gaps = 57/171 (33%)

Query: 207  PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE------------------------ 242
            P  KGD    E G A    A G     GP  PAGK                         
Sbjct: 1030 PGAKGDRG--ETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPA 1087

Query: 243  -------TEGSLSDSDFKEPPSEGRLDALQGPP-RTGGPSPAGPAAARLAEDP-APHYPA 293
                    +G   +   +          LQGPP   G P   GP+ A     P  P   A
Sbjct: 1088 GPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSA 1147

Query: 294  GAPA-------------PGPHPAAGEV----PPGPGGPSVIHSPPPPPPPA 327
            GAP              PGP    G+     PPGP GP     P PP PP+
Sbjct: 1148 GAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGP-----PGPPGPPS 1193


>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
           preproprotein [Homo sapiens]
          Length = 198

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 67/220 (30%), Positives = 82/220 (37%), Gaps = 54/220 (24%)

Query: 182 RNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPEGPEA--GGAEQKAASGCERLQGPPTPA 239
           +N +ED  +EE+  L   +   P  P+    P+GP    G  +     G  + QGPP P 
Sbjct: 17  QNLNEDVSQEESPSLIAGNPQGPS-PQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 75

Query: 240 ---GKETEGSLSDSDFKEP------PSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPH 290
              G   +G  S S    P      P +G     QGPP  GG  P GP        P P 
Sbjct: 76  KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKP--QGPPPQGGNKPQGP--------PPPG 125

Query: 291 YPAGAPAPGPHPA-AGEVPPG-PGGP--SVIHSPPPPPPPAVLAKPKLWSLAEIATSSDK 346
            P G PA G   + +   PPG P GP     ++P  PPPPA                   
Sbjct: 126 KPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPA------------------- 166

Query: 347 VKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSP 386
                GGN   P      P AGQ  G  R      PSR P
Sbjct: 167 -----GGNPQQP----QAPPAGQPQGPPRPPQGGRPSRPP 197



 Score = 33.9 bits (76), Expect = 0.34
 Identities = 33/117 (28%), Positives = 40/117 (34%), Gaps = 19/117 (16%)

Query: 283 LAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPP-----PPPAVLAKPKLWSL 337
           ++++ +P   AG P  GP P  G  P GP        PPPP     PPP    KP+    
Sbjct: 23  VSQEESPSLIAGNPQ-GPSPQGGNKPQGP--------PPPPGKPQGPPPQGGNKPQ---- 69

Query: 338 AEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPG 394
                   +     G    SP  P   P      GG    P P     P    P PG
Sbjct: 70  GPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPP-PG 125


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 82/270 (30%), Positives = 94/270 (34%), Gaps = 35/270 (12%)

Query: 198 KNDEDEPQKPEDKGDPEGPEAGGAEQK-AASGCERLQGPPTPAGKETE-GSLSDSDFKE- 254
           K    EP K  +KG P  P   G   K   +G     GP  PAG+  E G+   S F+  
Sbjct: 608 KGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGL 667

Query: 255 -----PPSEGRLDALQGPP-RTGGPSPAGPAAAR--LAEDPAP-----HYPAGAPAP--- 298
                PP EG     QG P   G P   GP   R    E  +P       P G P     
Sbjct: 668 PGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGT 727

Query: 299 -GPHPAAGEV-PPGPGGPSVIHSPPPPPPPAVLAKPK--LWSLAEIATSSDKVKDGGGGN 354
            GP  A+G   PPG  GP  +   P     A +A PK     + E        KDGG G 
Sbjct: 728 DGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGL 787

Query: 355 EGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYT- 413
            G   P  PGP       G    P PA S          G T    P  +  P  PG   
Sbjct: 788 TGPIGP--PGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP--PGADG 843

Query: 414 ------NYGSFGHLHGHPGPGP-GPTTGPG 436
                   G  G       PGP GP+  PG
Sbjct: 844 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 873



 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 79/251 (31%), Positives = 92/251 (36%), Gaps = 34/251 (13%)

Query: 209  DKGD--PEGPEAGGAEQKAASGCERLQGPPTPAG-KETEGSLSDSDFKEPPSEGRLDALQ 265
            +KG+  P GP AG A  + A G     GPP PAG     G+      K    E       
Sbjct: 802  EKGEVGPPGP-AGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 860

Query: 266  GPPRTGGPSPA----------GPAAARLAEDP--APHYPAGAPAPGPHPAAGEV-PPGPG 312
            G P   GPS A          GP  AR A+ P  A  +P  A   GP  + G   PPGP 
Sbjct: 861  GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 920

Query: 313  GPSVIHSPP----PPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAG 368
            GPS    P        PP    +P L   A      +K + G  G  G+  PP P  +AG
Sbjct: 921  GPSGKDGPKGARGDSGPPGRAGEPGLQGPA--GPPGEKGEPGDDGPSGAEGPPGPQGLAG 978

Query: 369  Q-------ALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420
            Q          G R  P  P PS  P  Q   PG +    P     P  PG T       
Sbjct: 979  QRGIVGLPGQRGERGFPGLPGPSGEPGKQ-GAPGASGDRGPPGPVGP--PGLTGPAGEPG 1035

Query: 421  LHGHPGPGPGP 431
              G PG    P
Sbjct: 1036 REGSPGADGPP 1046



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 42/137 (30%), Positives = 51/137 (37%), Gaps = 16/137 (11%)

Query: 206  KPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETE-GSLSDSDFKEPPSEGRLDAL 264
            K  D+G  E    G       +G   +QGP  P G + E G   +   K       L  L
Sbjct: 1084 KQGDRG--EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGL 1141

Query: 265  QGPPRTGGPS----PAGPAAAR--------LAEDPAPHYPAGAPAPGPHPAAGEV-PPGP 311
             GPP   G      PAGP+  R          +D A   P     PGP   +GE  P GP
Sbjct: 1142 PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGP 1201

Query: 312  GGPSVIHSPPPPPPPAV 328
             G      PP PP P +
Sbjct: 1202 PGNPGPPGPPGPPGPGI 1218



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 61/213 (28%), Positives = 71/213 (33%), Gaps = 53/213 (24%)

Query: 209 DKGD--PEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQG 266
           D+GD   +GPE G   +    G     GPP PAG   E                      
Sbjct: 766 DRGDVGEKGPE-GAPGKDGGRGLTGPIGPPGPAGANGEKG-------------------- 804

Query: 267 PPRTGGPSPAGPAAARLAE-------DPAPHYPAGAPA----PGPHPAAGEV-------P 308
               G P PAG A AR A         P P   AG P     PG     GE         
Sbjct: 805 --EVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGA 862

Query: 309 PGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGG-----GNEGSPCPP-C 362
           PGP GPS     P P  P  +  PK    A+    +       G     G+ G+P PP  
Sbjct: 863 PGPQGPS---GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP 919

Query: 363 PGPIAGQALGGSRASPAPAPSRSPSAQCPFPGG 395
           PGP       G+R    P P R+       P G
Sbjct: 920 PGPSGKDGPKGARGDSGP-PGRAGEPGLQGPAG 951



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 66/252 (26%), Positives = 79/252 (31%), Gaps = 48/252 (19%)

Query: 209 DKGDPEGPEAGGAE-QKAASGCERLQGPPTPAGKETEG----SLSDSDFKEPPSEGRLDA 263
           DKG+   P   G + +    G     GPP P G    G    +     F E     +L  
Sbjct: 139 DKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGV 198

Query: 264 LQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPP 323
           +QGP   G   P GP             PAG  APGP    G  P  PG P V     P 
Sbjct: 199 MQGP--MGPMGPRGPPG-----------PAG--APGPQGFQGN-PGEPGEPGVSGPMGPR 242

Query: 324 PPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSP----------CPPCPGPIAGQALGG 373
            PP    KP            +  K G  G  G P           P  PG    +   G
Sbjct: 243 GPPGPPGKP--------GDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPG 294

Query: 374 SRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTA-PFYPGYTNYGSFGHLHGHPG-PGP-- 429
              +   A +     +   PG      P+     P   G T         G+ G PGP  
Sbjct: 295 LDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAG 354

Query: 430 -----GPTTGPG 436
                GP  GPG
Sbjct: 355 PPGPVGPAGGPG 366



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 65/239 (27%), Positives = 78/239 (32%), Gaps = 39/239 (16%)

Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE-TEGSLSDSDFKEPPSEGRLDALQ 265
           P     P GP AGG     A G +   GP    G E  +G   +     P S G   A  
Sbjct: 352 PAGPPGPVGP-AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPG--TPGSPGPAGASG 408

Query: 266 GPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPP 325
            P   G P   G A A      AP +P     PGP  A G  P GP G +          
Sbjct: 409 NPGTDGIPGAKGSAGAPGIAG-APGFPGPRGPPGPQGATG--PLGPKGQT---------- 455

Query: 326 PAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP-CPGPIAGQALGGSRASP------ 378
                        E   +  K + G  G  G   P   PGP   +   G+R  P      
Sbjct: 456 ------------GEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 503

Query: 379 APAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPGS 437
            P   R       FPG   L+ P    AP   G +        +G PG  PG    PG+
Sbjct: 504 GPPGERGAPGNRGFPGQDGLAGP--KGAPGERGPSGLAGPKGANGDPG-RPGEPGLPGA 559



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 48/182 (26%), Positives = 57/182 (31%), Gaps = 28/182 (15%)

Query: 217  EAGGAEQKAASGCERLQGPPTPAGKETE-GSLSDSDFKEPPSEGRLDALQGP--PRTGGP 273
            E G      A G     GP  P GK+ + G         P        +QGP  PR    
Sbjct: 1060 ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKG 1119

Query: 274  SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPK 333
                P    L          G P P P P+  +   GP GPS    PP P  P+      
Sbjct: 1120 EAGEPGERGLKGHRGFTGLQGLPGP-PGPSGDQGASGPAGPSGPRGPPGPVGPS------ 1172

Query: 334  LWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQ-ALGGSRASPAPAPSRSPSAQCPF 392
                          KDG  G  G   PP P   +G+    G   +P P     P    P 
Sbjct: 1173 -------------GKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP----PG 1215

Query: 393  PG 394
            PG
Sbjct: 1216 PG 1217



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 58/226 (25%), Positives = 72/226 (31%), Gaps = 67/226 (29%)

Query: 210 KGDP--EGPEAGGAEQKAASGCERLQGPP-TPAGKETEGSLSDSDFKEPPSEGRLDALQG 266
           KG P   GP +G A  K A+G     G P  P  +   G   D+       +G++     
Sbjct: 527 KGAPGERGP-SGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAG-----PQGKVGPSGA 580

Query: 267 PPRTGGPSPAGPAAAR----LAEDPAPHYPAGAP----------APGPHPAAGEV----- 307
           P   G P P GP  AR    +   P P    G P          APG     G+      
Sbjct: 581 PGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA 640

Query: 308 --PPGPGGPSVIHS-------------PPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGG 352
             PPGP GP+                 P PP PP    KP                    
Sbjct: 641 AGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKP-------------------- 680

Query: 353 GNEGSP----CPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPG 394
           G++G P     P   GP   +   G R SP     + P      PG
Sbjct: 681 GDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPG 726



 Score = 37.7 bits (86), Expect = 0.023
 Identities = 61/251 (24%), Positives = 76/251 (30%), Gaps = 39/251 (15%)

Query: 204  PQKPEDKGDPEGPEAGGAEQK-AASGCERLQGPPTPAGKETEGSLSDSDFKE-------P 255
            P +  ++G P  P   G   K  A G    +GPP P G       +    +E       P
Sbjct: 986  PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 1045

Query: 256  PSE----------GRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAG 305
            P            G   A+  P   G P   GPA            P G        A  
Sbjct: 1046 PGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG-----------PTGKQGDRGE-AGA 1093

Query: 306  EVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGP 365
            + P GP GP+       P  P    +       E      K   G  G +G P P  PGP
Sbjct: 1094 QGPMGPSGPAGARGIQGPQGP----RGDKGEAGEPGERGLKGHRGFTGLQGLPGP--PGP 1147

Query: 366  IAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHP 425
               Q   G      P     P       G   +  P+    P   G +         G+P
Sbjct: 1148 SGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGP--RGRSGETGPAGPPGNP 1205

Query: 426  GPGPGPTTGPG 436
            GP PGP   PG
Sbjct: 1206 GP-PGPPGPPG 1215



 Score = 33.9 bits (76), Expect = 0.34
 Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 281 ARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEI 340
           A  +  P P    G P         + PPGP GP+    P          +       E 
Sbjct: 94  ATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGP----------RGDRGDKGEK 143

Query: 341 ATSSDKVKDGGGGNEGSPCPP-CPGPIAGQALGGSRAS 377
                + +DG  G  G+P PP  PGP     LGG+ A+
Sbjct: 144 GAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA 181


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 82/270 (30%), Positives = 94/270 (34%), Gaps = 35/270 (12%)

Query: 198 KNDEDEPQKPEDKGDPEGPEAGGAEQK-AASGCERLQGPPTPAGKETE-GSLSDSDFKE- 254
           K    EP K  +KG P  P   G   K   +G     GP  PAG+  E G+   S F+  
Sbjct: 539 KGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGL 598

Query: 255 -----PPSEGRLDALQGPP-RTGGPSPAGPAAAR--LAEDPAP-----HYPAGAPAP--- 298
                PP EG     QG P   G P   GP   R    E  +P       P G P     
Sbjct: 599 PGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGT 658

Query: 299 -GPHPAAGEV-PPGPGGPSVIHSPPPPPPPAVLAKPK--LWSLAEIATSSDKVKDGGGGN 354
            GP  A+G   PPG  GP  +   P     A +A PK     + E        KDGG G 
Sbjct: 659 DGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGL 718

Query: 355 EGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYT- 413
            G   P  PGP       G    P PA S          G T    P  +  P  PG   
Sbjct: 719 TGPIGP--PGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP--PGADG 774

Query: 414 ------NYGSFGHLHGHPGPGP-GPTTGPG 436
                   G  G       PGP GP+  PG
Sbjct: 775 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 804



 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 79/251 (31%), Positives = 92/251 (36%), Gaps = 34/251 (13%)

Query: 209 DKGD--PEGPEAGGAEQKAASGCERLQGPPTPAG-KETEGSLSDSDFKEPPSEGRLDALQ 265
           +KG+  P GP AG A  + A G     GPP PAG     G+      K    E       
Sbjct: 733 EKGEVGPPGP-AGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 791

Query: 266 GPPRTGGPSPA----------GPAAARLAEDP--APHYPAGAPAPGPHPAAGEV-PPGPG 312
           G P   GPS A          GP  AR A+ P  A  +P  A   GP  + G   PPGP 
Sbjct: 792 GAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 851

Query: 313 GPSVIHSPP----PPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAG 368
           GPS    P        PP    +P L   A      +K + G  G  G+  PP P  +AG
Sbjct: 852 GPSGKDGPKGARGDSGPPGRAGEPGLQGPA--GPPGEKGEPGDDGPSGAEGPPGPQGLAG 909

Query: 369 Q-------ALGGSRASPA-PAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGH 420
           Q          G R  P  P PS  P  Q   PG +    P     P  PG T       
Sbjct: 910 QRGIVGLPGQRGERGFPGLPGPSGEPGKQ-GAPGASGDRGPPGPVGP--PGLTGPAGEPG 966

Query: 421 LHGHPGPGPGP 431
             G PG    P
Sbjct: 967 REGSPGADGPP 977



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 42/137 (30%), Positives = 51/137 (37%), Gaps = 16/137 (11%)

Query: 206  KPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETE-GSLSDSDFKEPPSEGRLDAL 264
            K  D+G  E    G       +G   +QGP  P G + E G   +   K       L  L
Sbjct: 1015 KQGDRG--EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGL 1072

Query: 265  QGPPRTGGPS----PAGPAAAR--------LAEDPAPHYPAGAPAPGPHPAAGEV-PPGP 311
             GPP   G      PAGP+  R          +D A   P     PGP   +GE  P GP
Sbjct: 1073 PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGP 1132

Query: 312  GGPSVIHSPPPPPPPAV 328
             G      PP PP P +
Sbjct: 1133 PGNPGPPGPPGPPGPGI 1149



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 61/213 (28%), Positives = 71/213 (33%), Gaps = 53/213 (24%)

Query: 209 DKGD--PEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQG 266
           D+GD   +GPE G   +    G     GPP PAG   E                      
Sbjct: 697 DRGDVGEKGPE-GAPGKDGGRGLTGPIGPPGPAGANGEKG-------------------- 735

Query: 267 PPRTGGPSPAGPAAARLAE-------DPAPHYPAGAPA----PGPHPAAGEV-------P 308
               G P PAG A AR A         P P   AG P     PG     GE         
Sbjct: 736 --EVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGA 793

Query: 309 PGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGG-----GNEGSPCPP-C 362
           PGP GPS     P P  P  +  PK    A+    +       G     G+ G+P PP  
Sbjct: 794 PGPQGPS---GAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGP 850

Query: 363 PGPIAGQALGGSRASPAPAPSRSPSAQCPFPGG 395
           PGP       G+R    P P R+       P G
Sbjct: 851 PGPSGKDGPKGARGDSGP-PGRAGEPGLQGPAG 882



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 66/252 (26%), Positives = 79/252 (31%), Gaps = 48/252 (19%)

Query: 209 DKGDPEGPEAGGAE-QKAASGCERLQGPPTPAGKETEG----SLSDSDFKEPPSEGRLDA 263
           DKG+   P   G + +    G     GPP P G    G    +     F E     +L  
Sbjct: 70  DKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGV 129

Query: 264 LQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPP 323
           +QGP   G   P GP             PAG  APGP    G  P  PG P V     P 
Sbjct: 130 MQGP--MGPMGPRGPPG-----------PAG--APGPQGFQGN-PGEPGEPGVSGPMGPR 173

Query: 324 PPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSP----------CPPCPGPIAGQALGG 373
            PP    KP            +  K G  G  G P           P  PG    +   G
Sbjct: 174 GPPGPPGKP--------GDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPG 225

Query: 374 SRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTA-PFYPGYTNYGSFGHLHGHPG-PGP-- 429
              +   A +     +   PG      P+     P   G T         G+ G PGP  
Sbjct: 226 LDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAG 285

Query: 430 -----GPTTGPG 436
                GP  GPG
Sbjct: 286 PPGPVGPAGGPG 297



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 65/239 (27%), Positives = 78/239 (32%), Gaps = 39/239 (16%)

Query: 207 PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE-TEGSLSDSDFKEPPSEGRLDALQ 265
           P     P GP AGG     A G +   GP    G E  +G   +     P S G   A  
Sbjct: 283 PAGPPGPVGP-AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPG--TPGSPGPAGASG 339

Query: 266 GPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPP 325
            P   G P   G A A      AP +P     PGP  A G  P GP G +          
Sbjct: 340 NPGTDGIPGAKGSAGAPGIAG-APGFPGPRGPPGPQGATG--PLGPKGQT---------- 386

Query: 326 PAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP-CPGPIAGQALGGSRASP------ 378
                        E   +  K + G  G  G   P   PGP   +   G+R  P      
Sbjct: 387 ------------GEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 434

Query: 379 APAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPGS 437
            P   R       FPG   L+ P    AP   G +        +G PG  PG    PG+
Sbjct: 435 GPPGERGAPGNRGFPGQDGLAGP--KGAPGERGPSGLAGPKGANGDPG-RPGEPGLPGA 490



 Score = 39.7 bits (91), Expect = 0.006
 Identities = 48/182 (26%), Positives = 57/182 (31%), Gaps = 28/182 (15%)

Query: 217  EAGGAEQKAASGCERLQGPPTPAGKETE-GSLSDSDFKEPPSEGRLDALQGP--PRTGGP 273
            E G      A G     GP  P GK+ + G         P        +QGP  PR    
Sbjct: 991  ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKG 1050

Query: 274  SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPK 333
                P    L          G P P P P+  +   GP GPS    PP P  P+      
Sbjct: 1051 EAGEPGERGLKGHRGFTGLQGLPGP-PGPSGDQGASGPAGPSGPRGPPGPVGPS------ 1103

Query: 334  LWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQ-ALGGSRASPAPAPSRSPSAQCPF 392
                          KDG  G  G   PP P   +G+    G   +P P     P    P 
Sbjct: 1104 -------------GKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP----PG 1146

Query: 393  PG 394
            PG
Sbjct: 1147 PG 1148



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 58/226 (25%), Positives = 72/226 (31%), Gaps = 67/226 (29%)

Query: 210 KGDP--EGPEAGGAEQKAASGCERLQGPP-TPAGKETEGSLSDSDFKEPPSEGRLDALQG 266
           KG P   GP +G A  K A+G     G P  P  +   G   D+       +G++     
Sbjct: 458 KGAPGERGP-SGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAG-----PQGKVGPSGA 511

Query: 267 PPRTGGPSPAGPAAAR----LAEDPAPHYPAGAP----------APGPHPAAGEV----- 307
           P   G P P GP  AR    +   P P    G P          APG     G+      
Sbjct: 512 PGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA 571

Query: 308 --PPGPGGPSVIHS-------------PPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGG 352
             PPGP GP+                 P PP PP    KP                    
Sbjct: 572 AGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKP-------------------- 611

Query: 353 GNEGSP----CPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFPG 394
           G++G P     P   GP   +   G R SP     + P      PG
Sbjct: 612 GDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPG 657



 Score = 37.7 bits (86), Expect = 0.023
 Identities = 61/251 (24%), Positives = 76/251 (30%), Gaps = 39/251 (15%)

Query: 204  PQKPEDKGDPEGPEAGGAEQK-AASGCERLQGPPTPAGKETEGSLSDSDFKE-------P 255
            P +  ++G P  P   G   K  A G    +GPP P G       +    +E       P
Sbjct: 917  PGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP 976

Query: 256  PSE----------GRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAG 305
            P            G   A+  P   G P   GPA            P G        A  
Sbjct: 977  PGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG-----------PTGKQGDRGE-AGA 1024

Query: 306  EVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGP 365
            + P GP GP+       P  P    +       E      K   G  G +G P P  PGP
Sbjct: 1025 QGPMGPSGPAGARGIQGPQGP----RGDKGEAGEPGERGLKGHRGFTGLQGLPGP--PGP 1078

Query: 366  IAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHP 425
               Q   G      P     P       G   +  P+    P   G +         G+P
Sbjct: 1079 SGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGP--RGRSGETGPAGPPGNP 1136

Query: 426  GPGPGPTTGPG 436
            GP PGP   PG
Sbjct: 1137 GP-PGPPGPPG 1146



 Score = 33.5 bits (75), Expect = 0.44
 Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 11/92 (11%)

Query: 287 PAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDK 346
           P P    G P         + PPGP GP+    P          +       E      +
Sbjct: 31  PGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGP----------RGDRGDKGEKGAPGPR 80

Query: 347 VKDGGGGNEGSPCPP-CPGPIAGQALGGSRAS 377
            +DG  G  G+P PP  PGP     LGG+ A+
Sbjct: 81  GRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA 112


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 62/232 (26%), Positives = 81/232 (34%), Gaps = 27/232 (11%)

Query: 211 GDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRT 270
           G P GP A      +A+                 G  +     +P + G +  +Q PP  
Sbjct: 187 GKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTV--IQTPPFV 244

Query: 271 GGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLA 330
           G  +P  PAA      PAP  PA AP           PP P  P+ +  PP  P     A
Sbjct: 245 GAAAPPAPAAPSPPAAPAPAAPAAAP-----------PPPPPAPATLARPPGHPAGPPTA 293

Query: 331 KPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGP--IAGQ-ALGGSRASPAP-----AP 382
            P       +   +     G  G   +P P   GP  ++GQ   G + A+PAP     +P
Sbjct: 294 AP------AVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESP 347

Query: 383 SRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTG 434
            R   A  P       S P    A    G T  G+       P P PG  TG
Sbjct: 348 KRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTG 399



 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 61/180 (33%), Positives = 67/180 (37%), Gaps = 41/180 (22%)

Query: 274 SPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPK 333
           SPAG A A  A  PA   P  AP P   P AG   PG GGP     PP P  P V A P 
Sbjct: 66  SPAGAAGAGPAA-PAEGAPGAAPEP---PPAGRARPGGGGPQR-PGPPSPRRPLVPAGP- 119

Query: 334 LWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASPAPAPSRSPSAQCPFP 393
                  A  + K++    G+ GS C P P   A  A G   A   PA    P+A     
Sbjct: 120 -------APPAAKLRPPPEGSAGS-CAPVPAA-AAVAAGPEPAPAGPAKPAGPAALAARA 170

Query: 394 GGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPGSHFNGLNQTVLNRADAL 453
           G               PG             PGPGPGP  GPG          LN + AL
Sbjct: 171 GPG-------------PG-------------PGPGPGPGPGPGKPAGPGAAQTLNGSAAL 204



 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 83/295 (28%), Positives = 102/295 (34%), Gaps = 69/295 (23%)

Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRL-D 262
           P+ PE +    G         + +G     GP  PA    EG+   +   EPP  GR   
Sbjct: 45  PRTPEVRAAAAGALGNHVVSGSPAGAAGA-GPAAPA----EGAPGAAP--EPPPAGRARP 97

Query: 263 ALQGPPRTGGPSP------AGPA--AARLAEDP---------APHYPAGAPAPGPHPAAG 305
              GP R G PSP      AGPA  AA+L   P          P   A A  P P PA  
Sbjct: 98  GGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGP 157

Query: 306 EVPPGPG--------GPSVIHSPPPPPPPAVLAKP-----------KLWSLAEIATSSDK 346
             P GP         GP     P P P P   A P            L S    A +   
Sbjct: 158 AKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSL 217

Query: 347 VKDGGGGNEGSPCPPCPG------PIAGQALGGSRASPAPAPSRSPSAQC-----PFPGG 395
           V +G       P P  PG      P  G A   + A+P+P  + +P+A       P P  
Sbjct: 218 VNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAP 277

Query: 396 TVLSRPLYY------TAPFYP---GYTNYGSFGHLHGHPGPGPGPTTGPGSHFNG 441
             L+RP  +       AP  P      N GS G       P P P  G  +  +G
Sbjct: 278 ATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAG-----AAPAPAPAAGGPAGVSG 327


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 62.4 bits (150), Expect = 9e-10
 Identities = 85/283 (30%), Positives = 102/283 (36%), Gaps = 59/283 (20%)

Query: 204  PQKPEDKGD-----PEGP--EAGGAEQKAASGCERLQGPPTPAGKETE----------GS 246
            P +P  KG      P GP  E G + +    G E  +GPP   G+  +          G 
Sbjct: 796  PGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGD 855

Query: 247  LSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYP-----------AGA 295
            +        P E  L  LQGPP  G P P GP   +  +D  P +P            G 
Sbjct: 856  VGQDGAPGIPGEKGLPGLQGPP--GFPGPKGPPGHQ-GKDGRPGHPGQRGELGFQGQTGP 912

Query: 296  PAP----GPHPAAGEVPP-GPGGPSVIHSPPPPPPPAVLAKPKL----WSLAEIATSSDK 346
            P P    GP    GEV P G  GP     P PP PP     P L     +  E+      
Sbjct: 913  PGPAGVLGPQGKTGEVGPLGERGP-----PGPPGPPGEQGLPGLEGREGAKGELGPPGPL 967

Query: 347  VKDGGGGNEGSPCPP-CPGPIAGQALGGSRASPAPAPSR-SPSAQCPF--PGGTVLSRPL 402
             K+G  G  G P P   PG      L G +  P P  +  SP  + P    GG  L    
Sbjct: 968  GKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQS 1027

Query: 403  YYTAPFYPGYTNYGSFGHLHGHPG-------PGP-GPTTGPGS 437
                P  P     GS G   G PG       PGP GP   PG+
Sbjct: 1028 GSEGPVGPA-GKKGSRGE-RGPPGPTGKDGIPGPLGPLGPPGA 1068



 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 76/268 (28%), Positives = 91/268 (33%), Gaps = 46/268 (17%)

Query: 207  PEDKGDPEGPEAGGAEQ-----KAASGCERLQGPPTPAGKETEGSLSDSDFKEP------ 255
            P  +  P GP     EQ     +   G +   GPP P GKE    L    F  P      
Sbjct: 930  PLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRG--FPGPKGGPGD 987

Query: 256  PSEGRLDALQGPP----RTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEV---- 307
            P    L   +GPP      G P   GP    L        P  + + GP   AG+     
Sbjct: 988  PGPTGLKGDKGPPGPVGANGSPGERGP----LGPAGGIGLPGQSGSEGPVGPAGKKGSRG 1043

Query: 308  ---PPGPGGPSVIHSP--PPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP- 361
               PPGP G   I  P  P  PP A     +     ++     K   G  G+ G P  P 
Sbjct: 1044 ERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPG 1103

Query: 362  ------CPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPG---- 411
                   PGP       G R  P     +       F G  V+  P     P  PG    
Sbjct: 1104 IRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVG--VIGPPGLQGLPGPPGEKGE 1161

Query: 412  YTNYGSFGHLHGHPGP-GP-GPTTGPGS 437
              + GS G  HG PGP GP GPT   G+
Sbjct: 1162 VGDVGSMGP-HGAPGPRGPQGPTGSEGT 1188



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 64/229 (27%), Positives = 77/229 (33%), Gaps = 28/229 (12%)

Query: 207  PEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKE----TEGSLSDSDFKEPPSEGRLD 262
            P +KGDP   + GG     ASG     GPP   G       EG   +   K  P      
Sbjct: 1282 PGEKGDPG--DVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGP---- 1335

Query: 263  ALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEV-PPGPGGPSVIHSPP 321
               GPP   GP  A     R+  +     P     PG   A G++ PPGP GPS +    
Sbjct: 1336 --DGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLK 1393

Query: 322  PPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPP-------CPGPIAGQALGGS 374
                P    K  +  +  I    +  + G  G  G   PP        PGPI      GS
Sbjct: 1394 GDTGPKG-EKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPI------GS 1446

Query: 375  RASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHG 423
               P P     P  Q    G      P   T P  P     G+   LHG
Sbjct: 1447 LGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAGPPGPP-GAPAELHG 1494



 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 69/269 (25%), Positives = 84/269 (31%), Gaps = 53/269 (19%)

Query: 204 PQKPEDKGDPEGP--EAGGAEQKAASGCERLQG-------------PPTPAGKETEGSLS 248
           PQ P     P GP    G   +  A G   L G             P  P  K   G   
Sbjct: 510 PQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFG 569

Query: 249 DSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHY---PAGAPAPGPHPAAG 305
                 PP E      +GPP      P G A      +P P     P G+P P   P   
Sbjct: 570 HVGQPGPPGEDGERGAEGPP-----GPTGQAG-----EPGPRGLLGPRGSPGPTGRPGVT 619

Query: 306 EVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSL----AEIATSSDKVKDGGGGNEGSP-CP 360
            +   PG    +  P  P PP          L      I T  +K   G  GN G P  P
Sbjct: 620 GIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEK---GPPGNPGIPGLP 676

Query: 361 PCPGPI---AGQALGGSRASPAPAPSRSPSAQCPFPG-----GTVLSRPLY-----YTAP 407
              GP+     +   G + +  P  S  P     +PG     GT  +R L          
Sbjct: 677 GSDGPLGHPGHEGPTGEKGAQGPPGSAGPPG---YPGPRGVKGTSGNRGLQGEKGEKGED 733

Query: 408 FYPGYTNYGSFGHLHGHPG-PGPGPTTGP 435
            +PG+          G PG PGP    GP
Sbjct: 734 GFPGFKGDVGLKGDQGKPGAPGPRGEDGP 762



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 48/182 (26%), Positives = 61/182 (33%), Gaps = 43/182 (23%)

Query: 172 KKENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKP---------------------EDK 210
           +K+NK  WT     +  E + + D+ K +   P  P                     E  
Sbjct: 264 RKKNKEIWTSSPPPDSAENQTSTDIPKTETPAPNLPPTPTPLVVTSTVTTGLNATILERS 323

Query: 211 GDPE-GPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFK--EPPSEGRLDALQGP 267
            DP+ G E G  E KAA   E           E + S    DF+  E PS  +     G 
Sbjct: 324 LDPDSGTELGTLETKAAREDE-----------EGDDSTMGPDFRAAEYPSRTQFQIFPGA 372

Query: 268 PRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIHSPPPPPPPA 327
              G      PA     +     +     APGP    G  P GP GP      P PP PA
Sbjct: 373 GEKGAKGE--PAVIEKGQQ----FEGPPGAPGPQGVVG--PSGPPGPPGFPGDPGPPGPA 424

Query: 328 VL 329
            L
Sbjct: 425 GL 426


>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
          Length = 1336

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 74/265 (27%), Positives = 97/265 (36%), Gaps = 45/265 (16%)

Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263
           P  P+    P+GP  G    +   G   +QGPP P G   +G       + P S+G L  
Sbjct: 722 PPGPQGHLGPQGPP-GTQGMQGPPGPRGMQGPPHPHG--IQGGPGSQGIQGPVSQGPLMG 778

Query: 264 LQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAP----GPHPAAGEVPPGPG---GPSV 316
           L   PR G   P GP   R  + PAP        P    GPHP  G +  GP    GP  
Sbjct: 779 LN--PR-GMQGPPGP---RENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQE 832

Query: 317 IHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRA 376
           I     PPP   +  P         + S +     G  +GS  PP  G + G      + 
Sbjct: 833 IRGMQGPPPQGSMLGPPQELRGPPGSQSQQ-----GPPQGSLGPPPQGGMQGPPGPQGQQ 887

Query: 377 SPA--PAPSRSP-------------SAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHL 421
           +PA  P PS+ P               + PF      + P     P  PG    G+ G +
Sbjct: 888 NPARGPHPSQGPIPFQQQKTPLLGDGPRAPFNQEGQSTGP----PPLIPGLGQQGAQGRI 943

Query: 422 HG-----HPGPGPGPTTGPGSHFNG 441
                   PGP  G + GP +H  G
Sbjct: 944 PPLNPGQGPGPNKGDSRGPPNHHMG 968



 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 69/261 (26%), Positives = 91/261 (34%), Gaps = 57/261 (21%)

Query: 204 PQKPEDKGDPEGP--EAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRL 261
           P  P+ +  P+GP    GG   +   G +  QGPP       +G     D   P      
Sbjct: 628 PPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPP-------QGLPRPQDMHGP------ 674

Query: 262 DALQGPPRTGGP-SPAGPAAARLAEDPAPHY-PAGAPAPGPHPAAGEVPPGPGGPSVIHS 319
             +Q  P   GP  P GP   + +  P  H  P G P P  H    + PPGP G      
Sbjct: 675 QGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGH-IGPQGPPGPQGHLGPQG 733

Query: 320 PP-------PPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALG 372
           PP       PP P  +   P    +            GG G++G   P   GP+ G    
Sbjct: 734 PPGTQGMQGPPGPRGMQGPPHPHGI-----------QGGPGSQGIQGPVSQGPLMGLNPR 782

Query: 373 GSRASPAPAPSRSPSAQCPFPGGTVLSR-PLYYTAPFYPGYTNYGSFGH----------L 421
           G +  P P  ++ P+     P G ++   P     P  PG    G  GH          +
Sbjct: 783 GMQGPPGPRENQGPA-----PQGMIMGHPPQEMRGPHPPG----GLLGHGPQEMRGPQEI 833

Query: 422 HGHPGPGP-GPTTGPGSHFNG 441
            G  GP P G   GP     G
Sbjct: 834 RGMQGPPPQGSMLGPPQELRG 854



 Score = 35.0 bits (79), Expect = 0.15
 Identities = 48/180 (26%), Positives = 61/180 (33%), Gaps = 29/180 (16%)

Query: 280 AARLAEDPAPHYPAGAPAPGPHPAAGEVP------------PGPGGPSVIHSPPPPPPPA 327
           A +  E   P   +G P  GP P  G+ P            P    P  +    PP P  
Sbjct: 565 AQKQVEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQG 624

Query: 328 VLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCP-GPIAG----QALGGSRASPA-PA 381
               P      ++      +  GGGG +G   P  P GP  G    Q + G +     P 
Sbjct: 625 QFRPP--GPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPG 682

Query: 382 PSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLHGHPGPGP----GPTTGPGS 437
           P      Q P PG    S P  +  P  P     G  GH+     PGP    GP   PG+
Sbjct: 683 PHGPLGPQGP-PGPQGSSGPQGHMGPQGPP----GPQGHIGPQGPPGPQGHLGPQGPPGT 737



 Score = 32.7 bits (73), Expect = 0.75
 Identities = 66/265 (24%), Positives = 85/265 (32%), Gaps = 49/265 (18%)

Query: 203  EPQKPEDKGDPEGPE----AGGAEQKAASGCE-RLQGPPTPAGK------ETEGSLSDSD 251
            E ++P D+  P  PE     G  E+    G   R +G   P G+      E  G   + D
Sbjct: 1078 EGRRPGDERFPRDPEDPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPGPEDFGPEENFD 1137

Query: 252  FKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGP 311
              E  + GR   L+G  R  G    G        D  P +  G     P    G   PGP
Sbjct: 1138 ASEEAARGR--DLRGRGR--GTPRGGRKGLLPTPDEFPRFEGGRK---PDSWDGNREPGP 1190

Query: 312  GGPSVIHSPPPPPPPAVLAKP---------KLWSLAEIATSSDKVKDGGGGNEGSPCPPC 362
            G      +P P  PP     P         +   +A +        DG G +E       
Sbjct: 1191 GHEHFRDTPRPDHPPHDGHSPASRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMEAP 1250

Query: 363  PGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAPFYPGYTNYGSFGHLH 422
             GP   +  G  R  P PA  R P +           R        + GY     FG   
Sbjct: 1251 GGPSEDRG-GKGRGGPGPA-QRVPKS----------GRSSSLDGEHHDGYHRDEPFG--- 1295

Query: 423  GHPGPG-------PGPTTGPGSHFN 440
            G PG G        G   G GS+ N
Sbjct: 1296 GPPGSGTPSRGGRSGSNWGRGSNMN 1320


>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
          Length = 1690

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 76/270 (28%), Positives = 86/270 (31%), Gaps = 44/270 (16%)

Query: 198  KNDEDEPQKPEDKGDPEGPEAGGAE----QKAASGCERLQ--GPPTPAG----KETEGSL 247
            + D   P  P  KG    P   G      QK   G   L   GPP P G    K   G  
Sbjct: 1156 QGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLKGERGDP 1215

Query: 248  SDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAED------------PAPHYPAGA 295
                   P   G+      P  +G P PAG A  R  +D            P P  P GA
Sbjct: 1216 GSPGISPPGPRGKKGPPGPPGSSGPPGPAG-ATGRAPKDIPDPGPPGDQGPPGPDGPRGA 1274

Query: 296  PAPGPHPAAGEVPPGPGGPSVIHSPP----PPPPPAVLAKPKLWSLAEIATSSDKVKDGG 351
            P P   P + ++  G  G   +  PP    PP PP     P               KDG 
Sbjct: 1275 PGPPGLPGSVDLLRGEPGDCGLPGPPGPPGPPGPPGYKGFP-----------GCDGKDGQ 1323

Query: 352  GGNEGSPCPP----CPGPIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTAP 407
             G  G P P      PGP   + L G      P     P  + P P   V   P     P
Sbjct: 1324 KGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRGE-PGPPADVDDCPRIPGLP 1382

Query: 408  FYPGYTNYGSFGHLHGHPGP-GPGPTTGPG 436
              PG         L G  GP GPG    PG
Sbjct: 1383 GAPGMRGPEGAMGLPGMRGPSGPGCKGEPG 1412



 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 70/261 (26%), Positives = 87/261 (33%), Gaps = 66/261 (25%)

Query: 209  DKGDPEGP---EAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQ 265
            ++GDP  P     G   +K   G     GPP PAG  T  +  D     PP +      Q
Sbjct: 1211 ERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGA-TGRAPKDIPDPGPPGD------Q 1263

Query: 266  GPPRTGGPSPA-GPAAARLAED-----------PAPHYPAGAPAP--------------- 298
            GPP   GP  A GP     + D           P P  P G P P               
Sbjct: 1264 GPPGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQ 1323

Query: 299  ----------GPHPAAGEV-------PPGPGGPSVIHSP--PPPPPPAVLAKPKLWSLAE 339
                      GPH   G         PPG  GP+ +  P   P PP  V   P++  L  
Sbjct: 1324 KGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLP- 1382

Query: 340  IATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSR------ASPAPAPSRSPSAQCPFP 393
                  +  +G  G  G   P  PG      L G R       SP P   +  + +  +P
Sbjct: 1383 -GAPGMRGPEGAMGLPGMRGPSGPGCKGEPGLDGRRGVDGVPGSPGPPGRKGDTGEDGYP 1441

Query: 394  GGTVLSRPLYYTAP--FYPGY 412
            GG     P+    P  F PGY
Sbjct: 1442 GGPGPPGPIGDPGPKGFGPGY 1462



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 67/258 (25%), Positives = 85/258 (32%), Gaps = 43/258 (16%)

Query: 200 DEDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEG 259
           D   P +  + GD   P   G   +    C  + GPP P G      L      E    G
Sbjct: 371 DPGFPGRYGETGDVGPPGPPGLLGRPGEACAGMIGPPGPQGFPGLPGLPG----EAGIPG 426

Query: 260 RLDALQGPP-RTGGPS-PAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEV-PPGPGGPS- 315
           R D+  G P + G P  P  P    L      +   G   PGP    G+V PPG  GP  
Sbjct: 427 RPDSAPGKPGKPGSPGLPGAPGLQGLPGSSVIYCSVG--NPGPQGIKGKVGPPGGRGPKG 484

Query: 316 -------VIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAG 368
                      P P  PP     P         +  D    G  G +G P P  PG    
Sbjct: 485 EKGNEGLCACEPGPMGPPGPPGLP-----GRQGSKGDLGLPGWLGTKGDPGP--PGAEGP 537

Query: 369 QALGGSRASPAPAPSRSPSAQCPFPGGTVLSRPLYYTA-------PFYPGYT-NYGSFGH 420
             L G   +  P  ++         G  V+SR   +         P +PG   ++G  GH
Sbjct: 538 PGLPGKHGASGPPGNKGAK------GDMVVSRVKGHKGERGPDGPPGFPGQPGSHGRDGH 591

Query: 421 LHGHPGPGPGPTTGPGSH 438
                 PGP     PG H
Sbjct: 592 AGEKGDPGP-----PGDH 604



 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 48/176 (27%), Positives = 58/176 (32%), Gaps = 16/176 (9%)

Query: 209 DKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDALQGPP 268
           +KGDP  P   G  + A  G +   GP  P GK          F  PP E     + G P
Sbjct: 594 EKGDPGPP---GDHEDATPGGKGFPGPLGPPGKAGPVGPPGLGFPGPPGERGHPGVPGHP 650

Query: 269 RTGGP----SPAGPAAARLAEDPAPHYPAGAPA-PGPHPAAG-EVPPGPGGPSVIHSPPP 322
              GP       G   +     P  H P G    PGP    G +  PG  G       P 
Sbjct: 651 GVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPGPQGAPGLSGSDGHKGRPG 710

Query: 323 PPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCPPCPGPIAGQALGGSRASP 378
            P  A +  P            D    G GG +GS     PGP     + G +  P
Sbjct: 711 TPGTAEIPGPP-------GFRGDMGDPGFGGEKGSSPVGPPGPPGSPGVNGQKGIP 759



 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 44/140 (31%), Positives = 53/140 (37%), Gaps = 21/140 (15%)

Query: 203  EPQKPEDKGD-PEGPEAGGAE-QKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGR 260
            EP  P D  D P  P   GA   +   G   L G   P+G   +G        EP  +GR
Sbjct: 1365 EPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSGPGCKG--------EPGLDGR 1416

Query: 261  LDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPS----V 316
               + G P  G P P G    R  +     YP G   PGP    G    GPG       V
Sbjct: 1417 R-GVDGVP--GSPGPPG----RKGDTGEDGYPGGPGPPGPIGDPGPKGFGPGYLGGFLLV 1469

Query: 317  IHSPPPPPPPAVLAKPKLWS 336
            +HS     P   L  P+LW+
Sbjct: 1470 LHSQTDQEPTCPLGMPRLWT 1489



 Score = 38.5 bits (88), Expect = 0.014
 Identities = 65/285 (22%), Positives = 81/285 (28%), Gaps = 59/285 (20%)

Query: 204 PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGRLDA 263
           P  P ++G P  P   G   +   G +  +G          G      F  PP       
Sbjct: 635 PGPPGERGHPGVPGHPGV--RGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPG 692

Query: 264 LQGPPRTGGPS-----PAGPAAARLAEDPA-------PHY-------PAGAPAPGPHPAA 304
            QG P   G       P  P  A +   P        P +       P G P P   P  
Sbjct: 693 PQGAPGLSGSDGHKGRPGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPPGSPGV 752

Query: 305 GEVPPGPGGPSVIHSPPP---------------PPPPAVLAKPKLWSLAEIATSSDKVKD 349
                 PG P+  H  PP                 P    A+        +     K ++
Sbjct: 753 NGQKGIPGDPAFGHLGPPGKRGLSGVPGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGRE 812

Query: 350 GGGGNEGSPCPP----------------CPGPIAGQALGGSRASPAPAPSRSPSAQCPFP 393
           G  G  G P PP                 PG        G +  P       P+     P
Sbjct: 813 GHAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLP 872

Query: 394 GGTVLSRPLYYTAPFYPGYTNYGSFGH--LHGHPGPGPGPTTGPG 436
           G  +  RP  +  P  PG    G FG   L G PGP  GP   PG
Sbjct: 873 G--LPGRPGAHGPPGLPGIP--GPFGDDGLPGPPGP-KGPRGLPG 912



 Score = 35.4 bits (80), Expect = 0.12
 Identities = 71/289 (24%), Positives = 88/289 (30%), Gaps = 71/289 (24%)

Query: 204  PQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAG-KETEGSLSDSDFKEPPSEGRLD 262
            P  P ++G P      GA  K   G + + G P   G +  +G++       P  EG + 
Sbjct: 914  PGFPGERGKPGAEGCPGA--KGEPGEKGMSGLPGDRGLRGAKGAIGP-----PGDEGEMA 966

Query: 263  ALQGPPRTGGPSPAG-------------PAAARLAEDPAPHYPAGAPAPGPHPAAGEVPP 309
             +      G P P G             P       +P  + P G     P       PP
Sbjct: 967  IISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEKGQPGPP 1026

Query: 310  GPGGP-------SVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPC--- 359
            GP GP         I  P  P        P     + I  +      G  GN+G P    
Sbjct: 1027 GPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGAR-----GPKGNKGDPASHF 1081

Query: 360  -----------PPCPGPIAG---------QALGGSRASPAPAPSRSPSAQCPFPGGTVLS 399
                       P CPG             Q   GS   P P  S  P   CP   G    
Sbjct: 1082 GPPGPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPG-CPGDHGMPGL 1140

Query: 400  RPLYYTAPFYPGYTNYGSFGHLHGHPG-PGP----GPTTGPGSHFNGLN 443
            R         PG         L G PG PGP    GP+  PG   NGL+
Sbjct: 1141 RG-------QPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPG--LNGLH 1180


>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
          Length = 663

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 63/224 (28%), Positives = 81/224 (36%), Gaps = 51/224 (22%)

Query: 237 TPAGKETEGSLSDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAP 296
           TP G E     S      PPS+        P     P+ A  AAA +A   A  YP G  
Sbjct: 89  TPLGPEHMAQASTLGLS-PPSQAF------PAHPEAPAAAARAAALVAHPGAGSYPCGGG 141

Query: 297 APGPHPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEG 356
           + G  P+A   P  P  P+    PPPPPPP         +L+   T++     GGGG+ G
Sbjct: 142 SSGAQPSAPPPPAPPLPPTPSPPPPPPPPPPP-------ALSGYTTTN----SGGGGSSG 190

Query: 357 ----------------SPCPPCPG-PIAGQALGGSRASPAPAPSRSPSAQCPFPGGTVLS 399
                           +P     G P+ G+   G+ +   PAP        P   G  +S
Sbjct: 191 KGHSRDFVLRRDLSATAPAAAMHGAPLGGEQRSGTGSPQHPAPP-------PHSAGMFIS 243

Query: 400 RPLYYTAPFYPGYTNYGSFGHLHGHPGPGPGPTTGPGSHFNGLN 443
               Y  P   G      F  LH  PG        PG H + LN
Sbjct: 244 ASGTYAGP--DGSGGPALFPALHDTPG-------APGGHPHPLN 278



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 46/159 (28%), Positives = 55/159 (34%), Gaps = 41/159 (25%)

Query: 273 PSPAGPAAARLAEDPAPHYPAGAPAPG--------------------PHPAAGEVPPGPG 312
           P PA P     A+ P  H+P    A G                    P   AG  PP P 
Sbjct: 356 PPPAPPPPPAPAQHPHQHHPHLPGAAGAFLRYMRQPIKQELICKWIDPDELAGLPPPPPP 415

Query: 313 GPSVIHSPPPPPPPAVLAKP--KLWSLAEIATSSDKVKDGGGGNEGS------PCPPCPG 364
            P     PPPPPPPA  AKP  K +       +   V+  GG  + S       CP    
Sbjct: 416 PP-----PPPPPPPAGGAKPCSKTFGTMHELVNHVTVEHVGGPEQSSHVCFWEDCPREGK 470

Query: 365 PIAG--QALGGSRASPAPAPSRSPSAQCPFPG-GTVLSR 400
           P     + +   R      P       CPFPG G V +R
Sbjct: 471 PFKAKYKLINHIRVHTGEKP-----FPCPFPGCGKVFAR 504



 Score = 33.9 bits (76), Expect = 0.34
 Identities = 47/153 (30%), Positives = 57/153 (37%), Gaps = 40/153 (26%)

Query: 220 GAEQKAASGCERLQGPP------------TPAGKETEG--SLSDSDFKEPPSEG-RLDAL 264
           G EQ++ +G  +   PP            T AG +  G  +L  +    P + G     L
Sbjct: 218 GGEQRSGTGSPQHPAPPPHSAGMFISASGTYAGPDGSGGPALFPALHDTPGAPGGHPHPL 277

Query: 265 QGPPRTGGPSPAGPAAARL---AEDP-AP-----HYPAGAPAPGPH-------------- 301
            G  R G  + A  AAA L   AE P AP     HY A A A                  
Sbjct: 278 NGQMRLGLAAAAAAAAAELYGRAEPPFAPRSGDAHYGAVAAAAAAALHGYGAVNLNLNLA 337

Query: 302 PAAGEVPPGPGGPSVIHSPP--PPPPPAVLAKP 332
            AA     GPG     H+PP  PPPPPA    P
Sbjct: 338 AAAAAAAAGPGPHLQHHAPPPAPPPPPAPAQHP 370


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.309    0.131    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,636,123
Number of Sequences: 37866
Number of extensions: 2327506
Number of successful extensions: 35874
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 2018
Number of HSP's that attempted gapping in prelim test: 14572
Number of HSP's gapped (non-prelim): 12081
length of query: 483
length of database: 18,247,518
effective HSP length: 106
effective length of query: 377
effective length of database: 14,233,722
effective search space: 5366113194
effective search space used: 5366113194
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press