Guide to the Human Genome
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Name: IRX6 Sequence: fasta or formatted (446aa) NCBI GI: 42544241
Description:

iroquois homeobox protein 6

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         59           6
 C cysteine            3.1         14           2
 D aspartate           2.7         12           1
 E glutamate          10.1         45           9
 F phenylalanine       2.7         12           1
 G glycine             7.8         35           2
 H histidine           1.1          5           1
 I isoleucine          1.6          7           2
 K lysine              4.0         18           2
 L leucine             7.8         35           2
 M methionine          1.3          6           1
 N asparagine          2.2         10           1
 P proline             9.2         41           2
 Q glutamine           3.1         14           1
 R arginine            7.6         34           3
 S serine              9.2         41           3
 T threonine           5.6         25           2
 V valine              2.5         11           2
 W tryptophan          0.9          4           1
 Y tyrosine            4.0         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   iroquois homeobox protein 6 
IRX4                  0.296   iroquois homeobox 4 
IRX3                  0.199   iroquois homeobox 3 
IRX1                  0.194   iroquois homeobox protein 1 
IRX2                  0.171   iroquois homeobox 2 
IRX2                  0.171   iroquois homeobox 2 
IRX5                  0.170   iroquois homeobox protein 5 
MKX                   0.063   mohawk homeobox 
PKNOX2                0.048   PBX/knotted 1 homeobox 2 
MNX1                  0.039   homeo box HB9 
TGIF1                 0.038   TG-interacting factor isoform a 
TGIF1                 0.038   TG-interacting factor isoform c 
TGIF1                 0.038   TG-interacting factor isoform d 
TGIF1                 0.038   TG-interacting factor isoform d 
TGIF1                 0.038   TG-interacting factor isoform d 
TGIF1                 0.038   TG-interacting factor isoform d 
TGIF1                 0.038   TG-interacting factor isoform c 
TGIF1                 0.038   TG-interacting factor isoform b 
PKNOX1                0.038   PBX/knotted 1 homeobox 1 
TGIF2                 0.036   TGFB-induced factor homeobox 2 
ZFHX2                 0.034   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.034   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.034   PREDICTED: zinc finger homeobox 2 
TGIF2LX               0.033   TGFB-induced factor homeobox 2-like, X-linked 
MEIS3                 0.033   Meis1, myeloid ecotropic viral integration site 1 ho...
TGIF2LY               0.032   TGFB-induced factor homeobox 2-like, Y-linked 
MEIS1                 0.030   Meis homeobox 1 
MEIS2                 0.030   Meis homeobox 2 isoform h 
MEIS2                 0.030   Meis homeobox 2 isoform g 
MEIS2                 0.030   Meis homeobox 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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