Guide to the Human Genome
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Name: IRX4 Sequence: fasta or formatted (519aa) NCBI GI: 7705555
Description:

iroquois homeobox 4

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.2         84           6
 C cysteine            1.7          9           2
 D aspartate           3.9         20           2
 E glutamate           7.3         38           4
 F phenylalanine       2.3         12           1
 G glycine             9.4         49           3
 H histidine           1.7          9           1
 I isoleucine          1.0          5           2
 K lysine              4.6         24           2
 L leucine             9.2         48           2
 M methionine          1.5          8           1
 N asparagine          2.5         13           1
 P proline             9.4         49           2
 Q glutamine           2.5         13           1
 R arginine            5.2         27           3
 S serine              8.3         43           2
 T threonine           5.0         26           2
 V valine              3.3         17           1
 W tryptophan          1.2          6           1
 Y tyrosine            3.7         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   iroquois homeobox 4 
IRX6                  0.255   iroquois homeobox protein 6 
IRX3                  0.185   iroquois homeobox 3 
IRX5                  0.174   iroquois homeobox protein 5 
IRX1                  0.169   iroquois homeobox protein 1 
IRX2                  0.153   iroquois homeobox 2 
IRX2                  0.153   iroquois homeobox 2 
MKX                   0.052   mohawk homeobox 
TGIF1                 0.035   TG-interacting factor isoform a 
TGIF1                 0.035   TG-interacting factor isoform c 
TGIF1                 0.035   TG-interacting factor isoform d 
TGIF1                 0.035   TG-interacting factor isoform d 
TGIF1                 0.035   TG-interacting factor isoform d 
TGIF1                 0.035   TG-interacting factor isoform d 
TGIF1                 0.035   TG-interacting factor isoform c 
TGIF1                 0.035   TG-interacting factor isoform b 
PKNOX2                0.033   PBX/knotted 1 homeobox 2 
HOXB7                 0.032   homeobox B7 
PKNOX1                0.031   PBX/knotted 1 homeobox 1 
TGIF2                 0.030   TGFB-induced factor homeobox 2 
TGIF2LX               0.029   TGFB-induced factor homeobox 2-like, X-linked 
MEIS3                 0.028   Meis1, myeloid ecotropic viral integration site 1 ho...
MEIS1                 0.028   Meis homeobox 1 
TGIF2LY               0.027   TGFB-induced factor homeobox 2-like, Y-linked 
PBX4                  0.026   pre-B-cell leukemia homeobox 4 
MEIS2                 0.026   Meis homeobox 2 isoform h 
MEIS2                 0.026   Meis homeobox 2 isoform g 
MEIS2                 0.026   Meis homeobox 2 isoform a 
MEIS2                 0.026   Meis homeobox 2 isoform d 
MEIS2                 0.026   Meis homeobox 2 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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