Guide to the Human Genome
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Name: BNIP3 Sequence: fasta or formatted (194aa) NCBI GI: 7669481
Description:

BCL2/adenovirus E1B 19kD-interacting protein 3

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6          7           1
 C cysteine            0.5          1           1
 D aspartate           4.6          9           2
 E glutamate           7.7         15           2
 F phenylalanine       3.6          7           1
 G glycine             7.2         14           2
 H histidine           3.1          6           1
 I isoleucine          5.7         11           1
 K lysine              6.2         12           2
 L leucine             8.2         16           3
 M methionine          2.6          5           1
 N asparagine          5.2         10           2
 P proline             5.2         10           2
 Q glutamine           3.6          7           1
 R arginine            5.2         10           2
 S serine             16.0         31           3
 T threonine           5.7         11           2
 V valine              3.1          6           1
 W tryptophan          2.1          4           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   BCL2/adenovirus E1B 19kD-interacting protein 3 
BNIP3L                0.514   BCL2/adenovirus E1B 19kD-interacting protein 3-like [...
FLG                   0.022   filaggrin 
ERC2                  0.019   cytomatrix protein p110 
YTHDC1                0.019   splicing factor YT521-B isoform 2 
YTHDC1                0.019   splicing factor YT521-B isoform 1 
NOLC1                 0.016   nucleolar and coiled-body phosphoprotein 1 
USP26                 0.016   ubiquitin-specific protease 26 
ATG2B                 0.016   ATG2 autophagy related 2 homolog B 
TEX15                 0.016   testis expressed 15 
ACIN1                 0.014   apoptotic chromatin condensation inducer 1 
CLASP1                0.014   CLIP-associating protein 1 isoform 3 
CLASP1                0.014   CLIP-associating protein 1 isoform 2 
CLASP1                0.014   CLIP-associating protein 1 isoform 1 
TRIOBP                0.014   TRIO and F-actin binding protein isoform 6 
CHD9                  0.014   chromodomain helicase DNA binding protein 9 
HSPA4                 0.014   heat shock 70kDa protein 4 
BRD4                  0.014   bromodomain-containing protein 4 isoform short 
BRD4                  0.014   bromodomain-containing protein 4 isoform long 
HOMER2                0.014   homer 2 isoform 4 
AIM1                  0.014   absent in melanoma 1 
ZNF786                0.014   zinc finger protein 786 
KCNN1                 0.014   potassium intermediate/small conductance calcium-act...
ZCCHC10               0.014   zinc finger, CCHC domain containing 10 
REST                  0.014   RE1-silencing transcription factor 
ZFC3H1                0.014   proline/serine-rich coiled-coil 2 
DENND5B               0.011   DENN/MADD domain containing 5B 
GPATCH8               0.011   G patch domain containing 8 
C1orf92               0.011   hypothetical protein LOC149499 
SFRS2IP               0.011   splicing factor, arginine/serine-rich 2, interactin...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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