Guide to the Human Genome
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Name: HSPA4 Sequence: fasta or formatted (840aa) NCBI GI: 38327039
Description:

heat shock 70kDa protein 4

Referenced in:

Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         61           3
 C cysteine            1.8         15           1
 D aspartate           6.0         50           2
 E glutamate          10.4         87           3
 F phenylalanine       3.7         31           2
 G glycine             4.4         37           2
 H histidine           1.0          8           1
 I isoleucine          4.3         36           2
 K lysine              9.6         81           2
 L leucine             7.4         62           2
 M methionine          2.9         24           1
 N asparagine          4.6         39           2
 P proline             5.1         43           2
 Q glutamine           5.1         43           4
 R arginine            3.5         29           2
 S serine              7.4         62           3
 T threonine           4.9         41           2
 V valine              7.6         64           2
 W tryptophan          0.5          4           1
 Y tyrosine            2.7         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock 70kDa protein 4 
HSPA4L                0.648   heat shock 70kDa protein 4-like 
HSPH1                 0.645   heat shock 105kD 
HYOU1                 0.176   hypoxia up-regulated 1 precursor 
HYOU1                 0.176   hypoxia up-regulated 1 precursor 
HSPA6                 0.168   heat shock 70kDa protein 6 (HSP70B') 
HSPA1B                0.164   heat shock 70kDa protein 1B 
HSPA1A                0.164   heat shock 70kDa protein 1A 
HSPA1L                0.163   heat shock 70kDa protein 1-like 
HSPA8                 0.160   heat shock 70kDa protein 8 isoform 1 
HSPA5                 0.158   heat shock 70kDa protein 5 
HSPA2                 0.150   heat shock 70kDa protein 2 
HSPA8                 0.149   heat shock 70kDa protein 8 isoform 2 
HSPA9                 0.118   heat shock 70kDa protein 9 precursor 
HSPA14                0.101   heat shock 70kDa protein 14 isoform 1 
HSPA13                0.084   heat shock protein 70kDa family member 13 precursor ...
WDR87                 0.021   NYD-SP11 protein 
LOC400352             0.021   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.021   PREDICTED: similar to Putative golgin subfamily A m...
LOC283685             0.021   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.020   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CALD1                 0.018   caldesmon 1 isoform 1 
LOC283767             0.018   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.018   PREDICTED: hypothetical protein LOC645202 
MYST4                 0.017   MYST histone acetyltransferase (monocytic leukemia)...
LOC100133758          0.016   PREDICTED: hypothetical protein, partial 
LOC651807             0.016   PREDICTED: hypothetical protein 
LOC440243             0.016   PREDICTED: Putative golgin subfamily A member 6-lik...
MNS1                  0.015   meiosis-specific nuclear structural 1 
LOC727832             0.015   golgi autoantigen, golgin subfamily a-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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