Guide to the Human Genome
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Name: C1orf92 Sequence: fasta or formatted (559aa) NCBI GI: 163965441
Description:

hypothetical protein LOC149499

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         37           2
 C cysteine            1.4          8           1
 D aspartate           3.6         20           2
 E glutamate           8.4         47           3
 F phenylalanine       2.7         15           2
 G glycine             6.8         38           1
 H histidine           1.8         10           1
 I isoleucine          3.8         21           2
 K lysine              8.9         50           3
 L leucine            12.2         68           3
 M methionine          1.4          8           1
 N asparagine          3.2         18           3
 P proline             6.6         37           2
 Q glutamine           3.9         22           1
 R arginine            5.9         33           3
 S serine              8.9         50           3
 T threonine           5.7         32           2
 V valine              5.5         31           2
 W tryptophan          1.1          6           1
 Y tyrosine            1.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC149499 
NLRC3                 0.040   NOD3 protein 
NOD2                  0.036   nucleotide-binding oligomerization domain containing...
NLRP5                 0.028   NACHT, LRR and PYD containing protein 5 
LRRC68                0.025   PREDICTED: leucine rich repeat containing 68 
LRRC68                0.025   PREDICTED: leucine rich repeat containing 68 
LRRC68                0.025   PREDICTED: leucine rich repeat containing 68 
TCTE1                 0.023   t-complex-associated testis expressed 1 
C14orf166B            0.023   hypothetical protein LOC145497 
NLRP13                0.022   NACHT, leucine rich repeat and PYD containing 13 [H...
NLRP14                0.022   NLR family, pyrin domain containing 14 
NOD1                  0.021   nucleotide-binding oligomerization domain containing ...
NLRX1                 0.020   NLR family member X1 isoform 1 
LRRC45                0.020   leucine rich repeat containing 45 
LRRC34                0.019   leucine rich repeat containing 34 
NLRC5                 0.019   nucleotide-binding oligomerization domains 27 [Homo...
RNH1                  0.019   ribonuclease/angiogenin inhibitor 
RNH1                  0.019   ribonuclease/angiogenin inhibitor 
RNH1                  0.019   ribonuclease/angiogenin inhibitor 
RNH1                  0.019   ribonuclease/angiogenin inhibitor 
RNH1                  0.019   ribonuclease/angiogenin inhibitor 
RNH1                  0.019   ribonuclease/angiogenin inhibitor 
RNH1                  0.019   ribonuclease/angiogenin inhibitor 
RNH1                  0.019   ribonuclease/angiogenin inhibitor 
CIITA                 0.018   class II transactivator 
NLRP4                 0.018   NLR family, pyrin domain containing 4 
NLRX1                 0.017   NLR family member X1 isoform 2 
EPB41L2               0.015   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.015   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.015   erythrocyte membrane protein band 4.1-like 2 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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