Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZCCHC10 Sequence: fasta or formatted (170aa) NCBI GI: 8923106
Description:

zinc finger, CCHC domain containing 10

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3          9           1
 C cysteine            1.8          3           1
 D aspartate           6.5         11           2
 E glutamate           8.2         14           2
 F phenylalanine       0.6          1           1
 G glycine             1.8          3           1
 H histidine           2.4          4           1
 I isoleucine          1.2          2           1
 K lysine             11.2         19           6
 L leucine             4.7          8           3
 M methionine          1.2          2           1
 N asparagine          1.8          3           1
 P proline             2.4          4           2
 Q glutamine           2.9          5           2
 R arginine            5.9         10           2
 S serine             31.2         53           8
 T threonine           7.6         13           2
 V valine              1.8          3           1
 W tryptophan          0.6          1           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, CCHC domain containing 10 
TNRC18                0.186   trinucleotide repeat containing 18 
DSPP                  0.176   dentin sialophosphoprotein preproprotein 
CHD9                  0.173   chromodomain helicase DNA binding protein 9 
SRRM2                 0.169   splicing coactivator subunit SRm300 
LOC643446             0.136   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.136   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.136   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.136   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.136   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.136   PREDICTED: similar to ribonucleic acid binding prote...
RNPS1                 0.136   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.136   RNA-binding protein S1, serine-rich domain 
PNN                   0.133   pinin, desmosome associated protein 
SETD1A                0.130   SET domain containing 1A 
MUC21                 0.130   mucin 21 
PPRC1                 0.123   peroxisome proliferator-activated receptor gamma, co...
FAM133A               0.123   hypothetical protein LOC286499 
MLLT3                 0.116   myeloid/lymphoid or mixed-lineage leukemia (trithor...
CWC22                 0.110   CWC22 spliceosome-associated protein homolog 
ARL6IP4               0.106   SRp25 nuclear protein isoform 1 
AP3B2                 0.106   adaptor-related protein complex 3, beta 2 subunit [H...
FAM133B               0.106   hypothetical protein LOC257415 isoform 2 
FAM133B               0.106   hypothetical protein LOC257415 isoform 1 
ARL6IP4               0.106   SRp25 nuclear protein isoform 4 
ARL6IP4               0.106   SRp25 nuclear protein isoform 2 
PPIG                  0.103   peptidylprolyl isomerase G 
ARL6IP4               0.103   SRp25 nuclear protein isoform 3 
ZRANB2                0.100   zinc finger protein 265 isoform 1 
ZRANB2                0.100   zinc finger protein 265 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press