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Search of human proteins with 7662274
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7662274 epidermal Langerhans cell protein LCP1 [Homo
sapiens]
(621 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens] 1240 0.0
gi|226246533 TOX high mobility group box family member 3 isoform... 344 2e-94
gi|226054295 TOX high mobility group box family member 3 isoform... 339 4e-93
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 287 2e-77
gi|149408144 TOX high mobility group box family member 2 isoform... 225 1e-58
gi|149408141 TOX high mobility group box family member 2 isoform... 222 9e-58
gi|14249636 TOX high mobility group box family member 2 isoform ... 222 9e-58
gi|149408146 TOX high mobility group box family member 2 isoform... 181 2e-45
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 75 2e-13
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 75 2e-13
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 75 2e-13
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 74 4e-13
gi|4504425 high-mobility group box 1 [Homo sapiens] 73 9e-13
gi|194688135 high-mobility group box 2 [Homo sapiens] 72 2e-12
gi|194688133 high-mobility group box 2 [Homo sapiens] 72 2e-12
gi|11321591 high-mobility group box 2 [Homo sapiens] 72 2e-12
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 71 3e-12
gi|169168166 PREDICTED: similar to high mobility group box 3 [Ho... 71 3e-12
gi|239742753 PREDICTED: similar to high mobility group box 3 iso... 71 3e-12
gi|113416897 PREDICTED: similar to high mobility group box 3 iso... 71 3e-12
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 70 6e-12
gi|71143137 high-mobility group box 3 [Homo sapiens] 69 1e-11
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 69 2e-11
gi|83715964 high-mobility group 20B [Homo sapiens] 67 5e-11
gi|116284392 mucin 2 precursor [Homo sapiens] 66 1e-10
gi|57232750 HMG2 like isoform 1 [Homo sapiens] 66 1e-10
gi|57232748 HMG2 like isoform 2 [Homo sapiens] 66 1e-10
gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens] 65 1e-10
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 64 5e-10
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 64 5e-10
>gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens]
Length = 621
Score = 1240 bits (3208), Expect = 0.0
Identities = 621/621 (100%), Positives = 621/621 (100%)
Query: 1 MEFPGGNDNYLTITGPSHPFLSGAETFHTPSLGDEEFEIPPISLDSDPSLAVSDVVGHFD 60
MEFPGGNDNYLTITGPSHPFLSGAETFHTPSLGDEEFEIPPISLDSDPSLAVSDVVGHFD
Sbjct: 1 MEFPGGNDNYLTITGPSHPFLSGAETFHTPSLGDEEFEIPPISLDSDPSLAVSDVVGHFD 60
Query: 61 DLADPSSSQDGSFSAQYGVQTLDMPVGMTHGLMEQGGGLLSGGLTMDLDHSIGTQYSANP 120
DLADPSSSQDGSFSAQYGVQTLDMPVGMTHGLMEQGGGLLSGGLTMDLDHSIGTQYSANP
Sbjct: 61 DLADPSSSQDGSFSAQYGVQTLDMPVGMTHGLMEQGGGLLSGGLTMDLDHSIGTQYSANP 120
Query: 121 PVTIDVPMTDMTSGLMGHSQLTTIDQSELSSQLGLSLGGGTILPPAQSPEDRLSTTPSPT 180
PVTIDVPMTDMTSGLMGHSQLTTIDQSELSSQLGLSLGGGTILPPAQSPEDRLSTTPSPT
Sbjct: 121 PVTIDVPMTDMTSGLMGHSQLTTIDQSELSSQLGLSLGGGTILPPAQSPEDRLSTTPSPT 180
Query: 181 SSLHEDGVEDFRRQLPSQKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAA 240
SSLHEDGVEDFRRQLPSQKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAA
Sbjct: 181 SSLHEDGVEDFRRQLPSQKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAA 240
Query: 241 IKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATV 300
IKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATV
Sbjct: 241 IKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATV 300
Query: 301 ETVELDPAPPSQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASSGAG 360
ETVELDPAPPSQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASSGAG
Sbjct: 301 ETVELDPAPPSQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASSGAG 360
Query: 361 GQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQIVT 420
GQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQIVT
Sbjct: 361 GQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQIVT 420
Query: 421 RSVLQAAAAAAAAASMQLPPPRLQPPPLQQMPQPPTQQQVTILQQPPPLQAMQQPPPQKV 480
RSVLQAAAAAAAAASMQLPPPRLQPPPLQQMPQPPTQQQVTILQQPPPLQAMQQPPPQKV
Sbjct: 421 RSVLQAAAAAAAAASMQLPPPRLQPPPLQQMPQPPTQQQVTILQQPPPLQAMQQPPPQKV 480
Query: 481 RINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTVEAPSPETICEM 540
RINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTVEAPSPETICEM
Sbjct: 481 RINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTVEAPSPETICEM 540
Query: 541 ITDVVPEVESPSQMDVELVSGSPVALSPQPRCVRSGCENPPIVSKDWDNEYCSNECVVKH 600
ITDVVPEVESPSQMDVELVSGSPVALSPQPRCVRSGCENPPIVSKDWDNEYCSNECVVKH
Sbjct: 541 ITDVVPEVESPSQMDVELVSGSPVALSPQPRCVRSGCENPPIVSKDWDNEYCSNECVVKH 600
Query: 601 CRDVFLAWVASRNSNTVVFVK 621
CRDVFLAWVASRNSNTVVFVK
Sbjct: 601 CRDVFLAWVASRNSNTVVFVK 621
>gi|226246533 TOX high mobility group box family member 3 isoform 2
[Homo sapiens]
Length = 571
Score = 344 bits (882), Expect = 2e-94
Identities = 224/540 (41%), Positives = 309/540 (57%), Gaps = 36/540 (6%)
Query: 5 GGNDNYLTITGPSHPFLSGAETFHTPSLGDEEFEIPPISL--DSDPSLAVSDVVGHFDDL 62
G N+NY+ + ++ F + +ETFHTPSLGDEEFEIPPI+ +SDP+L + DV+ F L
Sbjct: 27 GNNNNYMNMAEANNAFFAASETFHTPSLGDEEFEIPPITPPPESDPALGMPDVLLPFQAL 86
Query: 63 ADPSSSQDGSFSAQYGVQTLDMP-VGMTHGLMEQGGGLLSGGLTMDLDHSIGTQYSANPP 121
+DP SQ F+ Q+ Q+LD+P + ++ L+EQ G L S GL MD H+ +QY +P
Sbjct: 87 SDPLPSQGSEFTPQFPPQSLDLPSITISRNLVEQDGVLHSSGLHMDQSHTQVSQYRQDPS 146
Query: 122 VTID--VPMTDMT-SGLMGHSQLTTIDQSELSSQLGLSLGGGTILPPAQSPEDRLSTTPS 178
+ + V MTD SG+M +QLTTI+QS+LS+QLGL+LGG ++ + SP S TPS
Sbjct: 147 LIMRSIVHMTDAARSGVMPPAQLTTINQSQLSAQLGLNLGGASMPHTSPSPPASKSATPS 206
Query: 179 PTSSLHEDGVEDFRRQLPSQKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQ 238
P+SS++E+ ++ R + +K ++GKK K PKK+KKKDPNEPQKPVSAYALFFRDTQ
Sbjct: 207 PSSSINEEDADEANRAI-GEKRAAPDSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDTQ 265
Query: 239 AAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQA 298
AAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAY+ + +A
Sbjct: 266 AAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRASLVSKA 325
Query: 299 TVETVELDPAPPSQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASSG 358
E+ E T+ AS L+ S+++N+ LS + AS
Sbjct: 326 AAESAEAQ--------------TIRSVQQTLASTN---LTSSLLLNTPLSQHGTVSAS-- 366
Query: 359 AGGQPNITKLIITKQMLPSSIT----MSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQ 414
P + + + + P +T M+Q I A + ++ G L + T+ S
Sbjct: 367 ----PQTLQQSLPRSIAPKPLTMRLPMNQIVTSVTIAANMPSNIGAPLISSMGTTMVGSA 422
Query: 415 QAQIVTRSVLQAAAAAAAAASMQLPPPRLQPPPLQQMPQPPTQQQVTILQQPPPLQAMQQ 474
+ V+ SV Q ++Q QQ+ Q QQ+ Q Q Q
Sbjct: 423 PSTQVSPSVQTQQHQMQLQQQQQQQQQQMQQMQQQQLQQHQMHQQIQQQMQQQHFQHHMQ 482
Query: 475 PPPQKVRINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTVEAPSP 534
Q+ + +LQQQ Q++ L++Q + S P +SP A + +P P
Sbjct: 483 QHLQQQQQHLQQQINQQQLQQQLQQRLQLQQ--LQHMQHQSQPSPRQHSPVASQITSPIP 540
>gi|226054295 TOX high mobility group box family member 3 isoform 1
[Homo sapiens]
Length = 576
Score = 339 bits (870), Expect = 4e-93
Identities = 224/541 (41%), Positives = 309/541 (57%), Gaps = 37/541 (6%)
Query: 5 GGNDNYLTITGPSHPFLSGAE-TFHTPSLGDEEFEIPPISL--DSDPSLAVSDVVGHFDD 61
G N+NY+ + ++ F + +E TFHTPSLGDEEFEIPPI+ +SDP+L + DV+ F
Sbjct: 31 GNNNNYMNMAEANNAFFAASEQTFHTPSLGDEEFEIPPITPPPESDPALGMPDVLLPFQA 90
Query: 62 LADPSSSQDGSFSAQYGVQTLDMP-VGMTHGLMEQGGGLLSGGLTMDLDHSIGTQYSANP 120
L+DP SQ F+ Q+ Q+LD+P + ++ L+EQ G L S GL MD H+ +QY +P
Sbjct: 91 LSDPLPSQGSEFTPQFPPQSLDLPSITISRNLVEQDGVLHSSGLHMDQSHTQVSQYRQDP 150
Query: 121 PVTID--VPMTDMT-SGLMGHSQLTTIDQSELSSQLGLSLGGGTILPPAQSPEDRLSTTP 177
+ + V MTD SG+M +QLTTI+QS+LS+QLGL+LGG ++ + SP S TP
Sbjct: 151 SLIMRSIVHMTDAARSGVMPPAQLTTINQSQLSAQLGLNLGGASMPHTSPSPPASKSATP 210
Query: 178 SPTSSLHEDGVEDFRRQLPSQKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDT 237
SP+SS++E+ ++ R + +K ++GKK K PKK+KKKDPNEPQKPVSAYALFFRDT
Sbjct: 211 SPSSSINEEDADEANRAI-GEKRAAPDSGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDT 269
Query: 238 QAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQ 297
QAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAY+ + +
Sbjct: 270 QAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYRASLVSK 329
Query: 298 ATVETVELDPAPPSQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASS 357
A E+ E T+ AS L+ S+++N+ LS + AS
Sbjct: 330 AAAESAEAQ--------------TIRSVQQTLASTN---LTSSLLLNTPLSQHGTVSAS- 371
Query: 358 GAGGQPNITKLIITKQMLPSSIT----MSQGGMVTVIPATVVTSRGLQLGQTSTATIQPS 413
P + + + + P +T M+Q I A + ++ G L + T+ S
Sbjct: 372 -----PQTLQQSLPRSIAPKPLTMRLPMNQIVTSVTIAANMPSNIGAPLISSMGTTMVGS 426
Query: 414 QQAQIVTRSVLQAAAAAAAAASMQLPPPRLQPPPLQQMPQPPTQQQVTILQQPPPLQAMQ 473
+ V+ SV Q ++Q QQ+ Q QQ+ Q Q
Sbjct: 427 APSTQVSPSVQTQQHQMQLQQQQQQQQQQMQQMQQQQLQQHQMHQQIQQQMQQQHFQHHM 486
Query: 474 QPPPQKVRINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTVEAPS 533
Q Q+ + +LQQQ Q++ L++Q + S P +SP A + +P
Sbjct: 487 QQHLQQQQQHLQQQINQQQLQQQLQQRLQLQQ--LQHMQHQSQPSPRQHSPVASQITSPI 544
Query: 534 P 534
P
Sbjct: 545 P 545
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 287 bits (735), Expect = 2e-77
Identities = 208/600 (34%), Positives = 295/600 (49%), Gaps = 133/600 (22%)
Query: 6 GNDNYLTITGPSHPFLSGAETFHTPSLGDEEFEIPPISLDSDPS---LAVSDVVGHFDDL 62
G + Y+++T PS ++ ++++ PSL E+F IPPI+ S P + +++V + L
Sbjct: 37 GENMYMSMTEPSQDYVPASQSYPGPSLESEDFNIPPITPPSLPDHSLVHLNEVESGYHSL 96
Query: 63 ADPSSSQDGSFSAQYGVQTLDMPVGMTHGLMEQGGGLLSGGLTM--DLDHSIGTQYSANP 120
P + + Q +D+P ++ Q G LLS +++ D+ + GTQYS++P
Sbjct: 97 CHPMNHNG---LLPFHPQNMDLPEITVSNMLGQDGTLLSNSISVMPDIRNPEGTQYSSHP 153
Query: 121 PVTIDVPMTDMTS-----GLMGHSQLTTIDQSELSSQLGLSLGGGTILPPAQSPEDRLST 175
+ P G+M H QLTTI+QS+LS+QLGL++GG + + SP S
Sbjct: 154 QMAAMRPRGQPADIRQQPGMMPHGQLTTINQSQLSAQLGLNMGGSNVPHNSPSPPGSKSA 213
Query: 176 TPSPTSSLHEDGVEDFRRQLPSQKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFR 235
TPSP+SS+HED +D + +K + GKK K PKK+KKKDPNEPQKPVSAYALFFR
Sbjct: 214 TPSPSSSVHEDEGDDTSKINGGEKRPASDMGKKPKTPKKKKKKDPNEPQKPVSAYALFFR 273
Query: 236 DTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQE 295
DTQAAIKGQNPNATFGEVSKIVASMWD LGEEQKQVYK+KTEAAKKEYLK LAAY+ +
Sbjct: 274 DTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRASLV 333
Query: 296 CQATVETVELDPAPPSQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQA 355
++ E V++ + P Q + P P+ A Y+++
Sbjct: 334 SKSYSEPVDVKTSQPPQLINSKPSVFHGPSQAHSA------------------LYLSSHY 375
Query: 356 SSGAGGQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQ 415
G P++T + LP +I +P TV
Sbjct: 376 HQQPGMNPHLTAM---HPSLPRNIAPKPNNQ---MPVTV--------------------- 408
Query: 416 AQIVTRSVLQAAAAAAAAASMQLPPPRLQPPPLQQMPQPPTQQQVTILQQPPPLQAMQQP 475
+ A+M + P PPPLQ PP Q + +QQ PL MQQP
Sbjct: 409 ----------------SIANMAVSP----PPPLQ--ISPPLHQHLN-MQQHQPL-TMQQP 444
Query: 476 PPQKVRINLQQQPPPLQIKS-VPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTVEAPSP 534
++ P+Q++S + PT++ TL P+ T+ P+
Sbjct: 445 LGNQL---------PMQVQSALHSPTMQQGFTL---------------QPDYQTIINPT- 479
Query: 535 ETICEMITDVVPEVESPSQMDVELVSGSPVALSPQPRCVRSGCENPPIVSKDWDNEYCSN 594
T +++T + VRSGC NPP DW+N+YCS+
Sbjct: 480 STAAQVVTQAM-------------------------EYVRSGCRNPPPQPVDWNNDYCSS 514
>gi|149408144 TOX high mobility group box family member 2 isoform a
[Homo sapiens]
Length = 506
Score = 225 bits (573), Expect = 1e-58
Identities = 170/479 (35%), Positives = 236/479 (49%), Gaps = 50/479 (10%)
Query: 6 GNDNYLTITGPSHPFLSGAETFHTPSLGDEEFEIPPISLDSDPS---LAVSDVVGHFDDL 62
G+ Y+ ++ + LS ++T++ S +E++EIPPI+ + P L + D + L
Sbjct: 36 GDSAYVGMSDGNPELLSTSQTYNGQSENNEDYEIPPITPPNLPEPSLLHLGDHEASYHSL 95
Query: 63 ADPSSSQDGSFSAQYGVQTLDMPVGMTHGLMEQGGGLLSGGLT--MDLDHSIGTQYSANP 120
+ +G A Y Q +D+P M ++ Q LLSG L ++ HS Y +
Sbjct: 96 CH-GLTPNGLLPA-YSYQAMDLPAIMVSNMLAQDSHLLSGQLPTIQEMVHSEVAAYDSGR 153
Query: 121 PVTIDVPMTDMTSGLMGHSQLTTIDQSELSSQLGLSLGGGTILPPAQSPEDRLSTTPSPT 180
P P+ + L H ++ + QS+L SQ+G+ +I + SP S TPSP+
Sbjct: 154 PG----PLLGRPAMLASH--MSALSQSQLISQMGIR---SSIAHSSPSPPGSKSATPSPS 204
Query: 181 SSLHEDGVEDFRRQLPSQKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAA 240
SS E+ E ++ +K + GKK K PKK+KKKDPNEPQKPVSAYALFFRDTQAA
Sbjct: 205 SSTQEEESE-VHFKISGEKRPSADPGKKAKNPKKKKKKDPNEPQKPVSAYALFFRDTQAA 263
Query: 241 IKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATV 300
IKGQNP+ATFG+VSKIVASMWDSLGEEQKQ YKRKTEAAKKEYLKALAAY+ + V
Sbjct: 264 IKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTEAAKKEYLKALAAYR-----ASLV 318
Query: 301 ETVELDPAPPSQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASSGAG 360
D T + PP + P P A P L+ S + S L QA
Sbjct: 319 SKSSPDQGETKSTQANPPAKMLPPKQPMYAM---PGLA-SFLTPSDL------QAFRSGA 368
Query: 361 GQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQT--STATIQPSQQAQI 418
++ + + +K +LP + A+ L T ++ P Q +
Sbjct: 369 SPASLARTLGSKSLLPG------------LSASPPPPPSFPLSPTLHQQLSLPPHAQGAL 416
Query: 419 VTRSVLQAAAAAAAAASMQLPPPRLQPPPLQQMPQPPTQQQVTILQQPPPLQAMQQPPP 477
++ V + A LP P L P PP Q + + P P P
Sbjct: 417 LSPPVSMSPAPQPPV----LPTPMALQVQLAMSPSPPGPQDFPHISEFPSSSGSCSPGP 471
Score = 41.6 bits (96), Expect = 0.002
Identities = 55/195 (28%), Positives = 68/195 (34%), Gaps = 62/195 (31%)
Query: 416 AQIVTRSVLQAAAAAAAAASMQ--------LPPPRLQPPPLQQMPQPPTQQQVTILQQPP 467
A +T S LQA + A+ AS+ LP PPP P PT Q L PP
Sbjct: 353 ASFLTPSDLQAFRSGASPASLARTLGSKSLLPGLSASPPPPPSFPLSPTLHQQ--LSLPP 410
Query: 468 PLQAMQQPPPQKVRINLQQQPPPLQIKSVPLP-TLKMQTTLVPPTVESSPERPMNNSPEA 526
Q PP V ++ QPP L P P L++Q + P SP P +
Sbjct: 411 HAQGALLSPP--VSMSPAPQPPVL-----PTPMALQVQLAMSP-----SPPGPQDFP--- 455
Query: 527 HTVEAPSPETICEMITDVVPEVESPSQMDVELVSGSPVALSPQPRCVRSGCENPPIVSKD 586
H E PS C SP P + P S D
Sbjct: 456 HISEFPSSSGSC----------------------------SPGP--------SNPTSSGD 479
Query: 587 WDNEYCSNECVVKHC 601
WD+ Y S EC + C
Sbjct: 480 WDSSYPSGECGISTC 494
>gi|149408141 TOX high mobility group box family member 2 isoform c
[Homo sapiens]
Length = 464
Score = 222 bits (565), Expect = 9e-58
Identities = 168/464 (36%), Positives = 229/464 (49%), Gaps = 50/464 (10%)
Query: 21 LSGAETFHTPSLGDEEFEIPPISLDSDPS---LAVSDVVGHFDDLADPSSSQDGSFSAQY 77
LS ++T++ S +E++EIPPI+ + P L + D + L + +G A Y
Sbjct: 9 LSTSQTYNGQSENNEDYEIPPITPPNLPEPSLLHLGDHEASYHSLCH-GLTPNGLLPA-Y 66
Query: 78 GVQTLDMPVGMTHGLMEQGGGLLSGGLT--MDLDHSIGTQYSANPPVTIDVPMTDMTSGL 135
Q +D+P M ++ Q LLSG L ++ HS Y + P P+ + L
Sbjct: 67 SYQAMDLPAIMVSNMLAQDSHLLSGQLPTIQEMVHSEVAAYDSGRPG----PLLGRPAML 122
Query: 136 MGHSQLTTIDQSELSSQLGLSLGGGTILPPAQSPEDRLSTTPSPTSSLHEDGVEDFRRQL 195
H ++ + QS+L SQ+G+ +I + SP S TPSP+SS E+ E ++
Sbjct: 123 ASH--MSALSQSQLISQMGIR---SSIAHSSPSPPGSKSATPSPSSSTQEEESE-VHFKI 176
Query: 196 PSQKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSK 255
+K + GKK K PKK+KKKDPNEPQKPVSAYALFFRDTQAAIKGQNP+ATFG+VSK
Sbjct: 177 SGEKRPSADPGKKAKNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSK 236
Query: 256 IVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPS 315
IVASMWDSLGEEQKQ YKRKTEAAKKEYLKALAAY+ + V D T +
Sbjct: 237 IVASMWDSLGEEQKQAYKRKTEAAKKEYLKALAAYR-----ASLVSKSSPDQGETKSTQA 291
Query: 316 PPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASSGAGGQPNITKLIITKQML 375
PP + P P A P L+ S + S L QA ++ + + +K +L
Sbjct: 292 NPPAKMLPPKQPMYAM---PGLA-SFLTPSDL------QAFRSGASPASLARTLGSKSLL 341
Query: 376 PSSITMSQGGMVTVIPATVVTSRGLQLGQT--STATIQPSQQAQIVTRSVLQAAAAAAAA 433
P + A+ L T ++ P Q +++ V + A
Sbjct: 342 PG------------LSASPPPPPSFPLSPTLHQQLSLPPHAQGALLSPPVSMSPAPQPPV 389
Query: 434 ASMQLPPPRLQPPPLQQMPQPPTQQQVTILQQPPPLQAMQQPPP 477
LP P L P PP Q + + P P P
Sbjct: 390 ----LPTPMALQVQLAMSPSPPGPQDFPHISEFPSSSGSCSPGP 429
Score = 41.6 bits (96), Expect = 0.002
Identities = 55/195 (28%), Positives = 68/195 (34%), Gaps = 62/195 (31%)
Query: 416 AQIVTRSVLQAAAAAAAAASMQ--------LPPPRLQPPPLQQMPQPPTQQQVTILQQPP 467
A +T S LQA + A+ AS+ LP PPP P PT Q L PP
Sbjct: 311 ASFLTPSDLQAFRSGASPASLARTLGSKSLLPGLSASPPPPPSFPLSPTLHQQ--LSLPP 368
Query: 468 PLQAMQQPPPQKVRINLQQQPPPLQIKSVPLP-TLKMQTTLVPPTVESSPERPMNNSPEA 526
Q PP V ++ QPP L P P L++Q + P SP P +
Sbjct: 369 HAQGALLSPP--VSMSPAPQPPVL-----PTPMALQVQLAMSP-----SPPGPQDFP--- 413
Query: 527 HTVEAPSPETICEMITDVVPEVESPSQMDVELVSGSPVALSPQPRCVRSGCENPPIVSKD 586
H E PS C SP P + P S D
Sbjct: 414 HISEFPSSSGSC----------------------------SPGP--------SNPTSSGD 437
Query: 587 WDNEYCSNECVVKHC 601
WD+ Y S EC + C
Sbjct: 438 WDSSYPSGECGISTC 452
>gi|14249636 TOX high mobility group box family member 2 isoform c
[Homo sapiens]
Length = 464
Score = 222 bits (565), Expect = 9e-58
Identities = 168/464 (36%), Positives = 229/464 (49%), Gaps = 50/464 (10%)
Query: 21 LSGAETFHTPSLGDEEFEIPPISLDSDPS---LAVSDVVGHFDDLADPSSSQDGSFSAQY 77
LS ++T++ S +E++EIPPI+ + P L + D + L + +G A Y
Sbjct: 9 LSTSQTYNGQSENNEDYEIPPITPPNLPEPSLLHLGDHEASYHSLCH-GLTPNGLLPA-Y 66
Query: 78 GVQTLDMPVGMTHGLMEQGGGLLSGGLT--MDLDHSIGTQYSANPPVTIDVPMTDMTSGL 135
Q +D+P M ++ Q LLSG L ++ HS Y + P P+ + L
Sbjct: 67 SYQAMDLPAIMVSNMLAQDSHLLSGQLPTIQEMVHSEVAAYDSGRPG----PLLGRPAML 122
Query: 136 MGHSQLTTIDQSELSSQLGLSLGGGTILPPAQSPEDRLSTTPSPTSSLHEDGVEDFRRQL 195
H ++ + QS+L SQ+G+ +I + SP S TPSP+SS E+ E ++
Sbjct: 123 ASH--MSALSQSQLISQMGIR---SSIAHSSPSPPGSKSATPSPSSSTQEEESE-VHFKI 176
Query: 196 PSQKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSK 255
+K + GKK K PKK+KKKDPNEPQKPVSAYALFFRDTQAAIKGQNP+ATFG+VSK
Sbjct: 177 SGEKRPSADPGKKAKNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSK 236
Query: 256 IVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPS 315
IVASMWDSLGEEQKQ YKRKTEAAKKEYLKALAAY+ + V D T +
Sbjct: 237 IVASMWDSLGEEQKQAYKRKTEAAKKEYLKALAAYR-----ASLVSKSSPDQGETKSTQA 291
Query: 316 PPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASSGAGGQPNITKLIITKQML 375
PP + P P A P L+ S + S L QA ++ + + +K +L
Sbjct: 292 NPPAKMLPPKQPMYAM---PGLA-SFLTPSDL------QAFRSGASPASLARTLGSKSLL 341
Query: 376 PSSITMSQGGMVTVIPATVVTSRGLQLGQT--STATIQPSQQAQIVTRSVLQAAAAAAAA 433
P + A+ L T ++ P Q +++ V + A
Sbjct: 342 PG------------LSASPPPPPSFPLSPTLHQQLSLPPHAQGALLSPPVSMSPAPQPPV 389
Query: 434 ASMQLPPPRLQPPPLQQMPQPPTQQQVTILQQPPPLQAMQQPPP 477
LP P L P PP Q + + P P P
Sbjct: 390 ----LPTPMALQVQLAMSPSPPGPQDFPHISEFPSSSGSCSPGP 429
Score = 41.6 bits (96), Expect = 0.002
Identities = 55/195 (28%), Positives = 68/195 (34%), Gaps = 62/195 (31%)
Query: 416 AQIVTRSVLQAAAAAAAAASMQ--------LPPPRLQPPPLQQMPQPPTQQQVTILQQPP 467
A +T S LQA + A+ AS+ LP PPP P PT Q L PP
Sbjct: 311 ASFLTPSDLQAFRSGASPASLARTLGSKSLLPGLSASPPPPPSFPLSPTLHQQ--LSLPP 368
Query: 468 PLQAMQQPPPQKVRINLQQQPPPLQIKSVPLP-TLKMQTTLVPPTVESSPERPMNNSPEA 526
Q PP V ++ QPP L P P L++Q + P SP P +
Sbjct: 369 HAQGALLSPP--VSMSPAPQPPVL-----PTPMALQVQLAMSP-----SPPGPQDFP--- 413
Query: 527 HTVEAPSPETICEMITDVVPEVESPSQMDVELVSGSPVALSPQPRCVRSGCENPPIVSKD 586
H E PS C SP P + P S D
Sbjct: 414 HISEFPSSSGSC----------------------------SPGP--------SNPTSSGD 437
Query: 587 WDNEYCSNECVVKHC 601
WD+ Y S EC + C
Sbjct: 438 WDSSYPSGECGISTC 452
>gi|149408146 TOX high mobility group box family member 2 isoform b
[Homo sapiens]
Length = 488
Score = 181 bits (459), Expect = 2e-45
Identities = 135/372 (36%), Positives = 191/372 (51%), Gaps = 49/372 (13%)
Query: 6 GNDNYLTITGPSHPFLSGAETFHTPSLGDEEFEIPPISLDSDPS---LAVSDVVGHFDDL 62
G+ Y+ ++ + LS ++T++ S +E++EIPPI+ + P L + D + L
Sbjct: 45 GDSAYVGMSDGNPELLSTSQTYNGQSENNEDYEIPPITPPNLPEPSLLHLGDHEASYHSL 104
Query: 63 ADPSSSQDGSFSAQYGVQTLDMPVGMTHGLMEQGGGLLSGGLT--MDLDHSIGTQYSANP 120
+ +G A Y Q +D+P M ++ Q LLSG L ++ HS Y +
Sbjct: 105 CH-GLTPNGLLPA-YSYQAMDLPAIMVSNMLAQDSHLLSGQLPTIQEMVHSEVAAYDSGR 162
Query: 121 PVTIDVPMTDMTSGLMGHSQLTTIDQSELSSQLGLSLGGGTILPPAQSPEDRLSTTPSPT 180
P P+ + L H ++ + QS+L SQ+G+ +I + SP S TPSP+
Sbjct: 163 PG----PLLGRPAMLASH--MSALSQSQLISQMGIR---SSIAHSSPSPPGSKSATPSPS 213
Query: 181 SSLHEDGVEDFRRQLPSQKTVVVEAGKKQKAPKKRKKKDPNEPQKPVSAYALFFRDTQAA 240
SS E+ E ++ +K + GKK K PKK+KKKDPNEPQKPVSAYALFFRDTQAA
Sbjct: 214 SSTQEEESE-VHFKISGEKRPSADPGKKAKNPKKKKKKDPNEPQKPVSAYALFFRDTQAA 272
Query: 241 IKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKE---------------YLK 285
IKGQNP+ATFG+VSKIVASMWDSLGEEQKQ + E + +
Sbjct: 273 IKGQNPSATFGDVSKIVASMWDSLGEEQKQSSPDQGETKSTQANPPAKMLPPKQPMYAMP 332
Query: 286 ALAAYKDNQECQA------------TVETVELDPAPPSQTPSPPPMATVDPASPAPASIE 333
LA++ + QA T+ + L P S +P PPP + P S+
Sbjct: 333 GLASFLTPSDLQAFRSGASPASLARTLGSKSLLPG-LSASPPPPPSFPLSPTLHQQLSLP 391
Query: 334 PPA----LSPSI 341
P A LSP +
Sbjct: 392 PHAQGALLSPPV 403
Score = 41.6 bits (96), Expect = 0.002
Identities = 55/195 (28%), Positives = 68/195 (34%), Gaps = 62/195 (31%)
Query: 416 AQIVTRSVLQAAAAAAAAASMQ--------LPPPRLQPPPLQQMPQPPTQQQVTILQQPP 467
A +T S LQA + A+ AS+ LP PPP P PT Q L PP
Sbjct: 335 ASFLTPSDLQAFRSGASPASLARTLGSKSLLPGLSASPPPPPSFPLSPTLHQQ--LSLPP 392
Query: 468 PLQAMQQPPPQKVRINLQQQPPPLQIKSVPLP-TLKMQTTLVPPTVESSPERPMNNSPEA 526
Q PP V ++ QPP L P P L++Q + P SP P +
Sbjct: 393 HAQGALLSPP--VSMSPAPQPPVL-----PTPMALQVQLAMSP-----SPPGPQD---FP 437
Query: 527 HTVEAPSPETICEMITDVVPEVESPSQMDVELVSGSPVALSPQPRCVRSGCENPPIVSKD 586
H E PS C SP P + P S D
Sbjct: 438 HISEFPSSSGSC----------------------------SPGP--------SNPTSSGD 461
Query: 587 WDNEYCSNECVVKHC 601
WD+ Y S EC + C
Sbjct: 462 WDSSYPSGECGISTC 476
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 74.7 bits (182), Expect = 2e-13
Identities = 32/82 (39%), Positives = 54/82 (65%)
Query: 210 KAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 269
K K+K KDPN P++P SA+ L+F + IKG+ P +FG+V+K + MW++ + K
Sbjct: 218 KGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDK 277
Query: 270 QVYKRKTEAAKKEYLKALAAYK 291
Q Y++++ K++Y K +AAY+
Sbjct: 278 QPYEKRSAKLKEKYEKDIAAYR 299
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 74.7 bits (182), Expect = 2e-13
Identities = 32/82 (39%), Positives = 54/82 (65%)
Query: 210 KAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 269
K K+K KDPN P++P SA+ L+F + IKG+ P +FG+V+K + MW++ + K
Sbjct: 218 KGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDK 277
Query: 270 QVYKRKTEAAKKEYLKALAAYK 291
Q Y++++ K++Y K +AAY+
Sbjct: 278 QPYEKRSAKLKEKYEKDIAAYR 299
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 74.7 bits (182), Expect = 2e-13
Identities = 32/82 (39%), Positives = 54/82 (65%)
Query: 210 KAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 269
K K+K KDPN P++P SA+ L+F + IKG+ P +FG+V+K + MW++ + K
Sbjct: 218 KGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADDK 277
Query: 270 QVYKRKTEAAKKEYLKALAAYK 291
Q Y++++ K++Y K +AAY+
Sbjct: 278 QPYEKRSAKLKEKYEKDIAAYR 299
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 73.9 bits (180), Expect = 4e-13
Identities = 41/132 (31%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 165 PAQSPED---RLSTTPSPTSSLHE-DGVEDFRRQLPSQKTVVVEAGKKQKAPKKRKK-KD 219
P + ED + S +SS +E D D +++ +K + + K +K P + KK KD
Sbjct: 484 PGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKD 543
Query: 220 PNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAA 279
PN P++P+SAY L+ ++ IK +P + ++SK +W + +E+K+ + RK E A
Sbjct: 544 PNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDA 603
Query: 280 KKEYLKALAAYK 291
+++Y KA+ Y+
Sbjct: 604 RRDYEKAMKEYE 615
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 72.8 bits (177), Expect = 9e-13
Identities = 32/82 (39%), Positives = 53/82 (64%)
Query: 210 KAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 269
K K+K KDPN P++P SA+ LF + + IKG++P + G+V+K + MW++ + K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 270 QVYKRKTEAAKKEYLKALAAYK 291
Q Y++K K++Y K +AAY+
Sbjct: 142 QPYEKKAAKLKEKYEKDIAAYR 163
Score = 42.0 bits (97), Expect = 0.002
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 217 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT--FGEVSKIVASMWDSLGEEQKQVYKR 274
K DP +P+ +S+YA F + + K ++P+A+ F E SK + W ++ ++K ++
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 275 KTEAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPS 315
+A K Y + + Y + + DP P + PS
Sbjct: 63 MAKADKARYEREMKTYIPP---KGETKKKFKDPNAPKRPPS 100
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 71.6 bits (174), Expect = 2e-12
Identities = 33/89 (37%), Positives = 53/89 (59%)
Query: 210 KAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 269
K KK KKKDPN P++P SA+ LF + + IK ++P + G+ +K + MW + K
Sbjct: 82 KGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDK 141
Query: 270 QVYKRKTEAAKKEYLKALAAYKDNQECQA 298
Q Y++K K++Y K +AAY+ + +A
Sbjct: 142 QPYEQKAAKLKEKYEKDIAAYRAKGKSEA 170
Score = 42.4 bits (98), Expect = 0.001
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 217 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT--FGEVSKIVASMWDSLGEEQKQVYKR 274
K DPN+P+ +S+YA F + + K ++P+++ F E SK + W ++ ++K ++
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 275 KTEAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPS 315
++ K Y + + Y + + + DP P + PS
Sbjct: 63 MAKSDKARYDREMKNYVPP---KGDKKGKKKDPNAPKRPPS 100
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 71.6 bits (174), Expect = 2e-12
Identities = 33/89 (37%), Positives = 53/89 (59%)
Query: 210 KAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 269
K KK KKKDPN P++P SA+ LF + + IK ++P + G+ +K + MW + K
Sbjct: 82 KGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDK 141
Query: 270 QVYKRKTEAAKKEYLKALAAYKDNQECQA 298
Q Y++K K++Y K +AAY+ + +A
Sbjct: 142 QPYEQKAAKLKEKYEKDIAAYRAKGKSEA 170
Score = 42.4 bits (98), Expect = 0.001
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 217 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT--FGEVSKIVASMWDSLGEEQKQVYKR 274
K DPN+P+ +S+YA F + + K ++P+++ F E SK + W ++ ++K ++
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 275 KTEAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPS 315
++ K Y + + Y + + + DP P + PS
Sbjct: 63 MAKSDKARYDREMKNYVPP---KGDKKGKKKDPNAPKRPPS 100
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 71.6 bits (174), Expect = 2e-12
Identities = 33/89 (37%), Positives = 53/89 (59%)
Query: 210 KAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 269
K KK KKKDPN P++P SA+ LF + + IK ++P + G+ +K + MW + K
Sbjct: 82 KGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDK 141
Query: 270 QVYKRKTEAAKKEYLKALAAYKDNQECQA 298
Q Y++K K++Y K +AAY+ + +A
Sbjct: 142 QPYEQKAAKLKEKYEKDIAAYRAKGKSEA 170
Score = 42.4 bits (98), Expect = 0.001
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 217 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT--FGEVSKIVASMWDSLGEEQKQVYKR 274
K DPN+P+ +S+YA F + + K ++P+++ F E SK + W ++ ++K ++
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 275 KTEAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPS 315
++ K Y + + Y + + + DP P + PS
Sbjct: 63 MAKSDKARYDREMKNYVPP---KGDKKGKKKDPNAPKRPPS 100
>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 70.9 bits (172), Expect = 3e-12
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 199 KTVVVEAGKKQKAPKK--RKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKI 256
KT V ++ K P K +KKKDP+ P++P S + LF + + IK NP + G+V+K
Sbjct: 62 KTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKK 121
Query: 257 VASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYK 291
+ MW++L + +KQ Y KT K++Y K +A K
Sbjct: 122 LGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSK 156
Score = 36.6 bits (83), Expect = 0.071
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 217 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKT 276
K DP +P+ +SAY F + + K +NP F E SK + W ++ ++K +
Sbjct: 3 KGDPKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKF---D 58
Query: 277 EAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPS 315
E AK + + K A + DP+ P + PS
Sbjct: 59 EMAKTDKVHCDREMKG----PAKGGKKKKDPSAPKRPPS 93
>gi|169168166 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 70.9 bits (172), Expect = 3e-12
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 199 KTVVVEAGKKQKAPKK--RKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKI 256
KT V ++ K P K +KKKDP+ P++P S + LF + + IK NP + G+V+K
Sbjct: 62 KTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKK 121
Query: 257 VASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYK 291
+ MW++L + +KQ Y KT K++Y K +A K
Sbjct: 122 LGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSK 156
Score = 36.6 bits (83), Expect = 0.071
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 217 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKT 276
K DP +P+ +SAY F + + K +NP F E SK + W ++ ++K +
Sbjct: 3 KGDPKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKF---D 58
Query: 277 EAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPS 315
E AK + + K A + DP+ P + PS
Sbjct: 59 EMAKTDKVHCDREMKG----PAKGGKKKKDPSAPKRPPS 93
>gi|239742753 PREDICTED: similar to high mobility group box 3
isoform 2 [Homo sapiens]
Length = 183
Score = 70.9 bits (172), Expect = 3e-12
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 199 KTVVVEAGKKQKAPKK--RKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKI 256
KT V ++ K P K +KKKDP+ P++P S + LF + + IK NP + G+V+K
Sbjct: 44 KTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKK 103
Query: 257 VASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYK 291
+ MW++L + +KQ Y KT K++Y K +A K
Sbjct: 104 LGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSK 138
>gi|113416897 PREDICTED: similar to high mobility group box 3
isoform 1 [Homo sapiens]
Length = 201
Score = 70.9 bits (172), Expect = 3e-12
Identities = 36/95 (37%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 199 KTVVVEAGKKQKAPKK--RKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKI 256
KT V ++ K P K +KKKDP+ P++P S + LF + + IK NP + G+V+K
Sbjct: 62 KTDKVHCDREMKGPAKGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKK 121
Query: 257 VASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYK 291
+ MW++L + +KQ Y KT K++Y K +A K
Sbjct: 122 LGEMWNNLNDSEKQPYITKTAKLKEKYEKDVADSK 156
Score = 36.6 bits (83), Expect = 0.071
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 217 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKT 276
K DP +P+ +SAY F + + K +NP F E SK + W ++ ++K +
Sbjct: 3 KGDPKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKF---D 58
Query: 277 EAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPS 315
E AK + + K A + DP+ P + PS
Sbjct: 59 EMAKTDKVHCDREMKG----PAKGGKKKKDPSAPKRPPS 93
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 70.1 bits (170), Expect = 6e-12
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 210 KAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 269
K KK+K KDPN P++P A+ LF + + IKG++P + +V K +A MW++ K
Sbjct: 756 KGEKKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADK 815
Query: 270 QVYKRKTEAAKKEYLKALAAYK 291
Q Y++K K++Y K +AAY+
Sbjct: 816 QFYEKKAAKLKEKYKKDIAAYR 837
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 68.9 bits (167), Expect = 1e-11
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 208 KQKAPKK--RKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLG 265
K P K +KKKDPN P++P S + LF + + IK NP + G+V+K + MW++L
Sbjct: 76 KDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLN 135
Query: 266 EEQKQVYKRKTEAAKKEYLKALAAYK 291
+ +KQ Y K K++Y K +A YK
Sbjct: 136 DSEKQPYITKAAKLKEKYEKDVADYK 161
Score = 42.4 bits (98), Expect = 0.001
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 217 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPN--ATFGEVSKIVASMWDSLGEEQKQVYKR 274
K DP +P+ +SAYA F + + K +NP F E SK + W ++ ++K +
Sbjct: 3 KGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDE 62
Query: 275 KTEAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPS 315
+A K Y + + Y A + DP P + PS
Sbjct: 63 MAKADKVRYDREMKDYG-----PAKGGKKKKDPNAPKRPPS 98
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 68.6 bits (166), Expect = 2e-11
Identities = 33/94 (35%), Positives = 56/94 (59%)
Query: 210 KAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 269
K K+K KDPN P++P SA+ LF + IKG++P + G+V+K + MW++ + K
Sbjct: 82 KGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 141
Query: 270 QVYKRKTEAAKKEYLKALAAYKDNQECQATVETV 303
Q ++K K++Y K +AAY+ + +A + V
Sbjct: 142 QPGEKKAAKLKEKYEKDIAAYQAKGKPEAAKKGV 175
Score = 37.0 bits (84), Expect = 0.054
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 217 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT--FGEVSKIVASMWDSLGEEQKQVYKR 274
K DP +P+ +S+YA F + + K ++ +A+ F E S + W ++ ++K ++
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFED 62
Query: 275 KTEAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPS 315
+A K Y + + Y + + DP P + PS
Sbjct: 63 MAKADKTHYERQMKTYIPP---KGETKKKFKDPNAPKRPPS 100
>gi|83715964 high-mobility group 20B [Homo sapiens]
Length = 317
Score = 67.0 bits (162), Expect = 5e-11
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 204 EAGKKQKAPK--KRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMW 261
E KK+ PK KRKK PN P+ PV+ Y F + + I+ ++P+ F E++K++ + W
Sbjct: 49 EPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEW 108
Query: 262 DSLGEEQKQVYKRKTEAAKKEYLKALAAYKDNQECQATVETVE 304
L +KQ Y + E K++Y+K L AY+ ++ + E ++
Sbjct: 109 SKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQ 151
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 65.9 bits (159), Expect = 1e-10
Identities = 66/289 (22%), Positives = 98/289 (33%), Gaps = 28/289 (9%)
Query: 307 PAPPSQTPSPP------PMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASSGAG 360
P+PP+ TPSPP P T P+ P I PPA + ++ +T S +
Sbjct: 1477 PSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPT 1536
Query: 361 GQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQIVT 420
P+ T + P + T + T P T+ S T I T
Sbjct: 1537 TTPSPPT---TTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITT 1593
Query: 421 RSVLQAAAAAAAAASMQLPPPRLQPPPLQQMP-QPPTQQQV---TILQQPPPLQAMQQPP 476
+ + + PPP P P P PPT T PPP PP
Sbjct: 1594 TTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPP 1653
Query: 477 PQKVR----------INLQQQPPPLQIKSVPLPTLKMQ--TTLVPPTVESSPERPM--NN 522
I PPP S P+ T TT+ P+ ++P P+
Sbjct: 1654 TTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTT 1713
Query: 523 SPEAHTVEAPSPETICEMITDVVPEVESPSQMDV-ELVSGSPVALSPQP 570
+P + T +P P T+ P + + + + SP+ +P P
Sbjct: 1714 TPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTTPLP 1762
Score = 63.9 bits (154), Expect = 4e-10
Identities = 75/314 (23%), Positives = 108/314 (34%), Gaps = 43/314 (13%)
Query: 290 YKDNQECQATVETVELDPAPPSQTPSPPPMATV---DPASPAP----ASIEPPALSPSIV 342
YK C ++ P+PP+ TPSPPP +T +P+P + PP +PS
Sbjct: 1382 YKIRVNCCWPMDKCITTPSPPTTTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPP 1441
Query: 343 VNSTL----SSYVANQASSGAGGQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSR 398
+ +T ++ + S+ P T T P + T S T P T
Sbjct: 1442 ITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPS 1501
Query: 399 GLQLGQTSTATIQPSQQAQIVTRSVLQAAAAAAAAASMQLPPPRLQPPPLQQMPQPPTQQ 458
T+T P+ T ++ + + PPP P P P P
Sbjct: 1502 ----PPTTTPITPPAS-----TTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTS 1552
Query: 459 QVTILQQPPPLQAMQQPPPQKVRINLQQQPPPLQIKSVPLPTL----KMQTTLVPPTVES 514
T+ PP PP PPP S P T + TT PPT
Sbjct: 1553 TTTL----PPTTTPSPPP------TTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTP 1602
Query: 515 SPERPMNNSPEAHTVEAPSPETICEMI----TDVVPEVESPSQMDVELVSGSPVALSPQP 570
SP +P T PSP T + T +P +PS + P +P P
Sbjct: 1603 SPPTTTTTTPPPTT--TPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTT-TPSP 1659
Query: 571 RCVRSGCENPPIVS 584
+ +PPI +
Sbjct: 1660 PTTTT--PSPPITT 1671
Score = 62.8 bits (151), Expect = 9e-10
Identities = 71/279 (25%), Positives = 90/279 (32%), Gaps = 36/279 (12%)
Query: 309 PPSQTPSPPPMATVDPA-----SPAPASIEPPALSPSIVVNSTLSSYVANQASSGAGGQP 363
PP+ TPSPP T P SP + PP +PS +T + S P
Sbjct: 1449 PPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSP-----P 1503
Query: 364 NITKLI--ITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQIVTR 421
T + + LP + T S T P T T+T P+ T
Sbjct: 1504 TTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSP----PTTTPITPPTS-----TT 1554
Query: 422 SVLQAAAAAAAAASMQLPPPRLQP-PPLQQMPQPPTQQQVT---ILQQPPPLQAMQQPPP 477
++ + + PPP P PP P PPT T PP PPP
Sbjct: 1555 TLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPP 1614
Query: 478 QKVRINLQQQP--PPLQIKSVPLPTLKMQ----TTLVPPTVESSPERPMNNSPEAHTVEA 531
P PP ++P T TT PPT SP SP T
Sbjct: 1615 TTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTT 1674
Query: 532 PSPETICEMITDVVPEVESPSQMDVELVSGSPVALSPQP 570
P P T T P +PS + + SP P
Sbjct: 1675 PPPTT-----TPSSPITTTPSPPTTTMTTPSPTTTPSSP 1708
Score = 50.1 bits (118), Expect = 6e-06
Identities = 55/264 (20%), Positives = 87/264 (32%), Gaps = 26/264 (9%)
Query: 299 TVETVELDPAPP-SQTPSPPPMATVDPASPAPA--SIEPPALSPSIVVNSTLSSYVANQA 355
T TV P P +QTP+ P+ T +P P + P +P I +T++
Sbjct: 4065 TTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTP-ITTTTTVTPTPTPTG 4123
Query: 356 SSGAGGQPNITKLIITKQ------MLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTAT 409
+ P T +T P++ ++ VT P T T+T T
Sbjct: 4124 TQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTT 4183
Query: 410 IQPSQQAQ-IVTRSVLQAAAAAAAAASMQLPPPRLQPPPLQQMPQPPTQQQVTILQQ-PP 467
+ P+ T + A A + PPP P + P + T+L PP
Sbjct: 4184 VTPTPTPTGTQTGPPTHTSTAPIAELTTSNPPPESSTPQTSRSTSSPLTESTTLLSTLPP 4243
Query: 468 PLQAMQQPPPQKVRINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAH 527
++ PP + P T T PP+ +SP
Sbjct: 4244 AIEMTSTAPP--------------STPTAPTTTSGGHTLSPPPSTTTSPPGTPTRGTTTG 4289
Query: 528 TVEAPSPETICEMITDVVPEVESP 551
+ AP+P T+ T +P
Sbjct: 4290 SSSAPTPSTVQTTTTSAWTPTPTP 4313
Score = 43.1 bits (100), Expect = 8e-04
Identities = 64/295 (21%), Positives = 95/295 (32%), Gaps = 26/295 (8%)
Query: 299 TVETVELDPAPP-SQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASS 357
T TV P P +QTP+ P+ T +P P P T ++ V +
Sbjct: 3973 TTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPT---PTGTQTPTTTPITTTTTVTPTPTP 4029
Query: 358 GAGGQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQ 417
P T + T + P T + G T + T+ + T T T P+
Sbjct: 4030 TGTQTPTTTPITTTTTVTP---TPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPI 4086
Query: 418 IVTRSVLQAAAAAAAAASMQLP---PPRLQPPPLQQMPQPPTQQQVTILQ--QPPPLQAM 472
T +V P + P P Q PT +T P P
Sbjct: 4087 TTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTG 4146
Query: 473 QQPP---PQKVRINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTV 529
Q P P + P P ++ + TT+ P + + P HT
Sbjct: 4147 TQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQ----TGPPTHTS 4202
Query: 530 EAPSPETICEMIT-DVVPEVESP--SQMDVELVSGSPVALSPQPRCVRSGCENPP 581
AP I E+ T + PE +P S+ ++ S LS P + PP
Sbjct: 4203 TAP----IAELTTSNPPPESSTPQTSRSTSSPLTESTTLLSTLPPAIEMTSTAPP 4253
Score = 41.2 bits (95), Expect = 0.003
Identities = 45/211 (21%), Positives = 67/211 (31%), Gaps = 21/211 (9%)
Query: 302 TVELDPAPPSQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASSGAGG 361
T+ PP+ TPSPP T P P + PP +P + T ++ + +
Sbjct: 1590 TITTTTPPPTTTPSPPTTTTTTP--PPTTTPSPPTTTP--ITPPTSTTTLPPTTTPSPPP 1645
Query: 362 QPNITKLIITKQMLPSSITMSQGGMVTVIPATVVT-SRGLQLGQTSTATIQPSQQAQIVT 420
T T P++ T S T P T S + + T +
Sbjct: 1646 TTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTP 1705
Query: 421 RSVLQAAAAAAAAASMQLPPPRLQPPPLQQMPQPPTQQQVTILQQPPPLQAMQQPPPQKV 480
S + ++ + PP + P P PPT T+ PP
Sbjct: 1706 SSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTL-------------PPTTT 1752
Query: 481 RINLQQQPPPLQIKSVPLPTLKMQTTLVPPT 511
L P P S+ PT +T P T
Sbjct: 1753 SSPLTTTPLP---PSITPPTFSPFSTTTPTT 1780
Score = 40.8 bits (94), Expect = 0.004
Identities = 50/245 (20%), Positives = 75/245 (30%), Gaps = 15/245 (6%)
Query: 299 TVETVELDPAPP-SQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASS 357
T TV P P +QTP+ P+ T +P P P T ++ V +
Sbjct: 1903 TTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPT---PTGTQTPTTTPITTTTTVTPTPTP 1959
Query: 358 GAGGQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQ 417
P T + T + P T + G T + T+ + T T T P+
Sbjct: 1960 TGTQTPTTTPITTTTTVTP---TPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPI 2016
Query: 418 IVTRSVLQAAAAAAAAASMQLP---PPRLQPPPLQQMPQPPTQQQVTILQ--QPPPLQAM 472
T +V P + P P Q PT +T P P
Sbjct: 2017 TTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTG 2076
Query: 473 QQPP---PQKVRINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTV 529
Q P P + P P ++ + TT+ P + + P T
Sbjct: 2077 TQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTT 2136
Query: 530 EAPSP 534
P+P
Sbjct: 2137 VTPTP 2141
Score = 40.8 bits (94), Expect = 0.004
Identities = 50/245 (20%), Positives = 75/245 (30%), Gaps = 15/245 (6%)
Query: 299 TVETVELDPAPP-SQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASS 357
T TV P P +QTP+ P+ T +P P P T ++ V +
Sbjct: 2133 TTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPT---PTGTQTPTTTPITTTTTVTPTPTP 2189
Query: 358 GAGGQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQ 417
P T + T + P T + G T + T+ + T T T P+
Sbjct: 2190 TGTQTPTTTPITTTTTVTP---TPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPI 2246
Query: 418 IVTRSVLQAAAAAAAAASMQLP---PPRLQPPPLQQMPQPPTQQQVTILQ--QPPPLQAM 472
T +V P + P P Q PT +T P P
Sbjct: 2247 TTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTG 2306
Query: 473 QQPP---PQKVRINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTV 529
Q P P + P P ++ + TT+ P + + P T
Sbjct: 2307 TQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTT 2366
Query: 530 EAPSP 534
P+P
Sbjct: 2367 VTPTP 2371
Score = 40.8 bits (94), Expect = 0.004
Identities = 50/245 (20%), Positives = 75/245 (30%), Gaps = 15/245 (6%)
Query: 299 TVETVELDPAPP-SQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASS 357
T TV P P +QTP+ P+ T +P P P T ++ V +
Sbjct: 2363 TTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPT---PTGTQTPTTTPITTTTTVTPTPTP 2419
Query: 358 GAGGQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQ 417
P T + T + P T + G T + T+ + T T T P+
Sbjct: 2420 TGTQTPTTTPITTTTTVTP---TPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPI 2476
Query: 418 IVTRSVLQAAAAAAAAASMQLP---PPRLQPPPLQQMPQPPTQQQVTILQ--QPPPLQAM 472
T +V P + P P Q PT +T P P
Sbjct: 2477 TTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTG 2536
Query: 473 QQPP---PQKVRINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTV 529
Q P P + P P ++ + TT+ P + + P T
Sbjct: 2537 TQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTT 2596
Query: 530 EAPSP 534
P+P
Sbjct: 2597 VTPTP 2601
Score = 40.8 bits (94), Expect = 0.004
Identities = 50/245 (20%), Positives = 75/245 (30%), Gaps = 15/245 (6%)
Query: 299 TVETVELDPAPP-SQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASS 357
T TV P P +QTP+ P+ T +P P P T ++ V +
Sbjct: 2593 TTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPT---PTGTQTPTTTPITTTTTVTPTPTP 2649
Query: 358 GAGGQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQ 417
P T + T + P T + G T + T+ + T T T P+
Sbjct: 2650 TGTQTPTTTPITTTTTVTP---TPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPI 2706
Query: 418 IVTRSVLQAAAAAAAAASMQLP---PPRLQPPPLQQMPQPPTQQQVTILQ--QPPPLQAM 472
T +V P + P P Q PT +T P P
Sbjct: 2707 TTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTG 2766
Query: 473 QQPP---PQKVRINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTV 529
Q P P + P P ++ + TT+ P + + P T
Sbjct: 2767 TQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTT 2826
Query: 530 EAPSP 534
P+P
Sbjct: 2827 VTPTP 2831
Score = 40.8 bits (94), Expect = 0.004
Identities = 50/245 (20%), Positives = 75/245 (30%), Gaps = 15/245 (6%)
Query: 299 TVETVELDPAPP-SQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASS 357
T TV P P +QTP+ P+ T +P P P T ++ V +
Sbjct: 2823 TTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPT---PTGTQTPTTTPITTTTTVTPTPTP 2879
Query: 358 GAGGQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQ 417
P T + T + P T + G T + T+ + T T T P+
Sbjct: 2880 TGTQTPTTTPITTTTTVTP---TPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPI 2936
Query: 418 IVTRSVLQAAAAAAAAASMQLP---PPRLQPPPLQQMPQPPTQQQVTILQ--QPPPLQAM 472
T +V P + P P Q PT +T P P
Sbjct: 2937 TTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTG 2996
Query: 473 QQPP---PQKVRINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTV 529
Q P P + P P ++ + TT+ P + + P T
Sbjct: 2997 TQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTT 3056
Query: 530 EAPSP 534
P+P
Sbjct: 3057 VTPTP 3061
Score = 40.8 bits (94), Expect = 0.004
Identities = 50/245 (20%), Positives = 75/245 (30%), Gaps = 15/245 (6%)
Query: 299 TVETVELDPAPP-SQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASS 357
T TV P P +QTP+ P+ T +P P P T ++ V +
Sbjct: 3053 TTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPT---PTGTQTPTTTPITTTTTVTPTPTP 3109
Query: 358 GAGGQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQ 417
P T + T + P T + G T + T+ + T T T P+
Sbjct: 3110 TGTQTPTTTPITTTTTVTP---TPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPI 3166
Query: 418 IVTRSVLQAAAAAAAAASMQLP---PPRLQPPPLQQMPQPPTQQQVTILQ--QPPPLQAM 472
T +V P + P P Q PT +T P P
Sbjct: 3167 TTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTG 3226
Query: 473 QQPP---PQKVRINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTV 529
Q P P + P P ++ + TT+ P + + P T
Sbjct: 3227 TQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTT 3286
Query: 530 EAPSP 534
P+P
Sbjct: 3287 VTPTP 3291
Score = 40.8 bits (94), Expect = 0.004
Identities = 50/245 (20%), Positives = 75/245 (30%), Gaps = 15/245 (6%)
Query: 299 TVETVELDPAPP-SQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASS 357
T TV P P +QTP+ P+ T +P P P T ++ V +
Sbjct: 3283 TTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPT---PTGTQTPTTTPITTTTTVTPTPTP 3339
Query: 358 GAGGQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQ 417
P T + T + P T + G T + T+ + T T T P+
Sbjct: 3340 TGTQTPTTTPITTTTTVTP---TPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPI 3396
Query: 418 IVTRSVLQAAAAAAAAASMQLP---PPRLQPPPLQQMPQPPTQQQVTILQ--QPPPLQAM 472
T +V P + P P Q PT +T P P
Sbjct: 3397 TTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTG 3456
Query: 473 QQPP---PQKVRINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTV 529
Q P P + P P ++ + TT+ P + + P T
Sbjct: 3457 TQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTT 3516
Query: 530 EAPSP 534
P+P
Sbjct: 3517 VTPTP 3521
Score = 40.8 bits (94), Expect = 0.004
Identities = 50/245 (20%), Positives = 75/245 (30%), Gaps = 15/245 (6%)
Query: 299 TVETVELDPAPP-SQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASS 357
T TV P P +QTP+ P+ T +P P P T ++ V +
Sbjct: 3513 TTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPT---PTGTQTPTTTPITTTTTVTPTPTP 3569
Query: 358 GAGGQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQ 417
P T + T + P T + G T + T+ + T T T P+
Sbjct: 3570 TGTQTPTTTPITTTTTVTP---TPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPI 3626
Query: 418 IVTRSVLQAAAAAAAAASMQLP---PPRLQPPPLQQMPQPPTQQQVTILQ--QPPPLQAM 472
T +V P + P P Q PT +T P P
Sbjct: 3627 TTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTG 3686
Query: 473 QQPP---PQKVRINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTV 529
Q P P + P P ++ + TT+ P + + P T
Sbjct: 3687 TQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTT 3746
Query: 530 EAPSP 534
P+P
Sbjct: 3747 VTPTP 3751
Score = 40.8 bits (94), Expect = 0.004
Identities = 50/245 (20%), Positives = 75/245 (30%), Gaps = 15/245 (6%)
Query: 299 TVETVELDPAPP-SQTPSPPPMATVDPASPAPASIEPPALSPSIVVNSTLSSYVANQASS 357
T TV P P +QTP+ P+ T +P P P T ++ V +
Sbjct: 3743 TTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPT---PTGTQTPTTTPITTTTTVTPTPTP 3799
Query: 358 GAGGQPNITKLIITKQMLPSSITMSQGGMVTVIPATVVTSRGLQLGQTSTATIQPSQQAQ 417
P T + T + P T + G T + T+ + T T T P+
Sbjct: 3800 TGTQTPTTTPITTTTTVTP---TPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPI 3856
Query: 418 IVTRSVLQAAAAAAAAASMQLP---PPRLQPPPLQQMPQPPTQQQVTILQ--QPPPLQAM 472
T +V P + P P Q PT +T P P
Sbjct: 3857 TTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTG 3916
Query: 473 QQPP---PQKVRINLQQQPPPLQIKSVPLPTLKMQTTLVPPTVESSPERPMNNSPEAHTV 529
Q P P + P P ++ + TT+ P + + P T
Sbjct: 3917 TQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTT 3976
Query: 530 EAPSP 534
P+P
Sbjct: 3977 VTPTP 3981
>gi|57232750 HMG2 like isoform 1 [Homo sapiens]
Length = 186
Score = 65.9 bits (159), Expect = 1e-10
Identities = 29/86 (33%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 213 KKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 272
KKR+K+DP EP++P S++ LF +D A +K +NPN + +V+K MW + + +K Y
Sbjct: 83 KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPY 142
Query: 273 KRKTEAAKKEYLKALAAYKDNQECQA 298
+++ + +Y + L Y+ ++C A
Sbjct: 143 EQRVALLRAKYFEELELYR--KQCNA 166
Score = 36.2 bits (82), Expect = 0.092
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 222 EPQKPVSAYALFFRDTQAAIKGQNPNATFG--EVSKIVASMWDSLGEEQKQVYKRKTEAA 279
+P+ VS+Y F + + K Q PN G E S+ + W S+ + +K Y+ +
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 280 KKEYLKALAAYKDNQECQATVETVELDPAPPSQTPS 315
K Y + + Y ++ + + DP P + PS
Sbjct: 68 KARYQEEMMNYVGKRK-----KRRKRDPQEPRRPPS 98
>gi|57232748 HMG2 like isoform 2 [Homo sapiens]
Length = 112
Score = 65.9 bits (159), Expect = 1e-10
Identities = 29/86 (33%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 213 KKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 272
KKR+K+DP EP++P S++ LF +D A +K +NPN + +V+K MW + + +K Y
Sbjct: 9 KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPY 68
Query: 273 KRKTEAAKKEYLKALAAYKDNQECQA 298
+++ + +Y + L Y+ ++C A
Sbjct: 69 EQRVALLRAKYFEELELYR--KQCNA 92
>gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens]
Length = 601
Score = 65.5 bits (158), Expect = 1e-10
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 25/198 (12%)
Query: 147 SELSSQLGLS---LGGGTIL--PPAQSPEDRLSTTPSPTSSLHEDGVEDFRRQLPSQKTV 201
S+ LGLS +G T+ PP P + P P LH DG +
Sbjct: 340 SKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSE----------- 388
Query: 202 VVEAGKKQKAPKKRKKKDPNEP--QKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVAS 259
KK+K +K K+++ E +K +SAY +F ++ + I +P FGE+SK +A
Sbjct: 389 -----KKKKKEEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAE 443
Query: 260 MWDSLGEEQKQVYKRKTE--AAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPSPP 317
+W L E+ K ++K+K + K+ +A + + +++ S P
Sbjct: 444 VWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSP 503
Query: 318 PMATVDPASPAPASIEPP 335
P + PASPA A P
Sbjct: 504 PTTMLLPASPAKAPETEP 521
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 63.5 bits (153), Expect = 5e-10
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 213 KKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 272
K KKKDPN P++P S + LF + + IK NP + G+V+K + MW++L + +KQ Y
Sbjct: 82 KGGKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPY 141
Query: 273 KRKTEAAKKEYLK 285
K K++Y K
Sbjct: 142 VTKAAKLKEKYEK 154
Score = 35.0 bits (79), Expect = 0.21
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 217 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPN--ATFGEVSKIVASMWDSLGEEQKQVYKR 274
K DP +PQ +SAYA + K +NP F E SK + W ++ ++K +
Sbjct: 3 KGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVLVNFAEFSKKCSGRWKTMSSKEKFKFGE 62
Query: 275 KTEAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPS 315
+A + Y + + Y + + + DP P + PS
Sbjct: 63 MAKADEVCYDREMKDYGPAKGGK------KKDPNAPKRPPS 97
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 63.5 bits (153), Expect = 5e-10
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 213 KKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVY 272
K KKKDPN P++P S + LF + + IK NP + G+V+K + MW++L + +KQ Y
Sbjct: 82 KGGKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPY 141
Query: 273 KRKTEAAKKEYLK 285
K K++Y K
Sbjct: 142 VTKAAKLKEKYEK 154
Score = 35.0 bits (79), Expect = 0.21
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 217 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPN--ATFGEVSKIVASMWDSLGEEQKQVYKR 274
K DP +PQ +SAYA + K +NP F E SK + W ++ ++K +
Sbjct: 3 KGDPKKPQGKMSAYAFSVQTCCKEHKKKNPEVPVNFAEFSKKCSGRWKTMSSKEKFKFGE 62
Query: 275 KTEAAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPS 315
+A + Y + + Y + + + DP P + PS
Sbjct: 63 MAKADEVCYDREMKDYGPAKGGK------KKDPNAPKRPPS 97
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.127 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,698,115
Number of Sequences: 37866
Number of extensions: 1790139
Number of successful extensions: 22694
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 932
Number of HSP's that attempted gapping in prelim test: 11875
Number of HSP's gapped (non-prelim): 7077
length of query: 621
length of database: 18,247,518
effective HSP length: 108
effective length of query: 513
effective length of database: 14,157,990
effective search space: 7263048870
effective search space used: 7263048870
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.