Guide to the Human Genome
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Name: LOC100289899 Sequence: fasta or formatted (287aa) NCBI GI: 239749424
Description:

PREDICTED: hypothetical protein XP_002347041

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         22           3
 C cysteine            2.8          8           1
 D aspartate           5.9         17           2
 E glutamate           9.1         26           3
 F phenylalanine       1.7          5           1
 G glycine             4.2         12           2
 H histidine           0.3          1           1
 I isoleucine          4.5         13           1
 K lysine             10.1         29           3
 L leucine             8.0         23           2
 M methionine          3.5         10           1
 N asparagine          6.3         18           1
 P proline             3.5         10           2
 Q glutamine           3.5         10           1
 R arginine            6.6         19           1
 S serine              8.0         23           2
 T threonine           8.0         23           2
 V valine              3.8         11           2
 W tryptophan          0.7          2           1
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347041 
TCEA1                 1.000   transcription elongation factor A 1 isoform 1 
TCEA1                 0.907   transcription elongation factor A 1 isoform 2 
TCEA2                 0.643   transcription elongation factor A protein 2 isoform a...
TCEA2                 0.619   transcription elongation factor A protein 2 isoform ...
TCEA3                 0.546   transcription elongation factor A (SII), 3 
TCEANC                0.183   TFIIS central domain-containing protein 1 
PHF3                  0.090   PHD finger protein 3 
MED26                 0.057   mediator complex subunit 26 
DIDO1                 0.049   death inducer-obliterator 1 isoform c 
DIDO1                 0.049   death inducer-obliterator 1 isoform b 
TCEB3                 0.048   elongin A 
SPOCD1                0.048   SPOC domain containing 1 
POLR3K                0.044   DNA directed RNA polymerase III polypeptide K 
C1orf83               0.038   hypothetical protein LOC127428 
PPP1R10               0.029   protein phosphatase 1, regulatory subunit 10 
ATAD5                 0.020   ATPase family, AAA domain containing 5 
TCEB3CL               0.018   transcription elongation factor B polypeptide 3C-li...
TCEB3C                0.018   transcription elongation factor B polypeptide 3C [H...
ZNF12                 0.018   zinc finger protein 12 isoform b 
ZNF12                 0.018   zinc finger protein 12 isoform a 
PDE4DIP               0.018   phosphodiesterase 4D interacting protein isoform 2 [...
PDE4DIP               0.018   phosphodiesterase 4D interacting protein isoform 1 ...
PHF14                 0.018   PHD finger protein 14 isoform 2 
PHF14                 0.018   PHD finger protein 14 isoform 1 
PDE4DIP               0.018   phosphodiesterase 4D interacting protein isoform 5 [...
TCEB3B                0.018   elongin A2 
ZNF776                0.016   zinc finger protein 776 
ZNF383                0.016   zinc finger protein 383 
EPSTI1                0.016   epithelial stromal interaction 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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