Guide to the Human Genome
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Name: TCEA1 Sequence: fasta or formatted (280aa) NCBI GI: 45439355
Description:

transcription elongation factor A 1 isoform 2

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt prot [301aa] transcription elongation factor A 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         21           3
 C cysteine            2.9          8           1
 D aspartate           6.4         18           2
 E glutamate           9.3         26           3
 F phenylalanine       2.1          6           1
 G glycine             3.9         11           2
 H histidine           0.4          1           1
 I isoleucine          4.3         12           1
 K lysine             10.7         30           3
 L leucine             5.7         16           2
 M methionine          3.9         11           1
 N asparagine          6.1         17           1
 P proline             3.2          9           2
 Q glutamine           3.2          9           1
 R arginine            7.1         20           1
 S serine              8.2         23           2
 T threonine           7.9         22           2
 V valine              4.6         13           2
 W tryptophan          0.7          2           1
 Y tyrosine            1.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription elongation factor A 1 isoform 2 
TCEA1                 0.976   transcription elongation factor A 1 isoform 1 
LOC100289899          0.925   PREDICTED: hypothetical protein XP_002347041 
TCEA2                 0.611   transcription elongation factor A protein 2 isoform a...
TCEA2                 0.589   transcription elongation factor A protein 2 isoform ...
TCEA3                 0.521   transcription elongation factor A (SII), 3 
TCEANC                0.172   TFIIS central domain-containing protein 1 
PHF3                  0.092   PHD finger protein 3 
DIDO1                 0.050   death inducer-obliterator 1 isoform c 
DIDO1                 0.050   death inducer-obliterator 1 isoform b 
SPOCD1                0.049   SPOC domain containing 1 
POLR3K                0.045   DNA directed RNA polymerase III polypeptide K 
MED26                 0.028   mediator complex subunit 26 
GCC2                  0.026   GRIP and coiled-coil domain-containing 2 
C1orf83               0.024   hypothetical protein LOC127428 
ZNF12                 0.019   zinc finger protein 12 isoform b 
ZNF12                 0.019   zinc finger protein 12 isoform a 
PHF14                 0.019   PHD finger protein 14 isoform 2 
PHF14                 0.019   PHD finger protein 14 isoform 1 
ZNF776                0.017   zinc finger protein 776 
ZNF383                0.017   zinc finger protein 383 
EPSTI1                0.017   epithelial stromal interaction 1 isoform 1 
MAGEB6                0.017   melanoma antigen family B, 6 
SFRS11                0.015   splicing factor, arginine/serine-rich 11 
ZNF248                0.015   zinc finger protein 248 
DNMT1                 0.015   DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho...
DNMT1                 0.015   DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo...
ATAD5                 0.015   ATPase family, AAA domain containing 5 
ZFC3H1                0.015   proline/serine-rich coiled-coil 2 
KIAA1107              0.015   hypothetical protein LOC23285 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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