Guide to the Human Genome
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Name: TCEA3 Sequence: fasta or formatted (348aa) NCBI GI: 41350335
Description:

transcription elongation factor A (SII), 3

Referenced in:

RNA Polymerase and General Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         24           2
 C cysteine            3.7         13           1
 D aspartate           5.7         20           3
 E glutamate           8.0         28           3
 F phenylalanine       1.1          4           1
 G glycine             4.9         17           2
 H histidine           1.1          4           1
 I isoleucine          2.9         10           1
 K lysine             11.8         41           3
 L leucine             8.6         30           2
 M methionine          3.4         12           1
 N asparagine          4.0         14           1
 P proline             4.9         17           2
 Q glutamine           2.9         10           1
 R arginine            7.2         25           2
 S serine             10.1         35           3
 T threonine           5.5         19           3
 V valine              4.6         16           2
 W tryptophan          0.9          3           1
 Y tyrosine            1.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription elongation factor A (SII), 3 
TCEA2                 0.470   transcription elongation factor A protein 2 isoform a...
TCEA1                 0.464   transcription elongation factor A 1 isoform 1 
LOC100289899          0.441   PREDICTED: hypothetical protein XP_002347041 
TCEA2                 0.420   transcription elongation factor A protein 2 isoform ...
TCEA1                 0.413   transcription elongation factor A 1 isoform 2 
TCEANC                0.166   TFIIS central domain-containing protein 1 
PHF3                  0.065   PHD finger protein 3 
DIDO1                 0.050   death inducer-obliterator 1 isoform c 
DIDO1                 0.050   death inducer-obliterator 1 isoform b 
MED26                 0.037   mediator complex subunit 26 
TCEB3                 0.037   elongin A 
POLR3K                0.036   DNA directed RNA polymerase III polypeptide K 
PLEKHG5               0.027   pleckstrin homology domain containing family G membe...
PLEKHG5               0.027   pleckstrin homology domain containing family G memb...
PLEKHG5               0.027   pleckstrin homology domain containing family G memb...
PLEKHG5               0.027   pleckstrin homology domain containing family G memb...
PLEKHG5               0.027   pleckstrin homology domain containing family G memb...
LOC643446             0.025   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.025   PREDICTED: similar to ribonucleic acid binding prot...
RNPS1                 0.025   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.025   RNA-binding protein S1, serine-rich domain 
C1orf83               0.024   hypothetical protein LOC127428 
SPOCD1                0.024   SPOC domain containing 1 
PPP1R10               0.022   protein phosphatase 1, regulatory subunit 10 
ZCCHC10               0.022   zinc finger, CCHC domain containing 10 
AEBP1                 0.022   adipocyte enhancer binding protein 1 precursor [Homo...
LOC643446             0.022   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.022   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.022   PREDICTED: similar to ribonucleic acid binding prot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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