Guide to the Human Genome
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Name: LOC100131202 Sequence: fasta or formatted (290aa) NCBI GI: 239757964
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {202aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.0          3           1
 C cysteine            0.3          1           1
 D aspartate          10.0         29           2
 E glutamate          18.6         54           2
 F phenylalanine       0.3          1           1
 G glycine             5.9         17           2
 H histidine           1.0          3           1
 I isoleucine          1.0          3           1
 K lysine             11.0         32           3
 L leucine             3.4         10           2
 M methionine          0.3          1           1
 N asparagine          1.0          3           1
 P proline             2.4          7           1
 Q glutamine           5.2         15           1
 R arginine           24.8         72           3
 S serine              4.1         12           2
 T threonine           5.9         17           1
 V valine              1.7          5           1
 W tryptophan          1.4          4           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100286959          0.430   PREDICTED: hypothetical protein XP_002343921 
LOC100131202          0.368   PREDICTED: hypothetical protein 
LOC100288837          0.304   PREDICTED: hypothetical protein XP_002343931, parti...
ZC3H13                0.283   zinc finger CCCH-type containing 13 
LOC100134067          0.281   PREDICTED: hypothetical protein 
RBM25                 0.278   RNA binding motif protein 25 
SFRS12                0.219   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.219   splicing factor, arginine/serine-rich 12 isoform b [...
LOC100133599          0.216   PREDICTED: hypothetical protein 
LOC100133599          0.205   PREDICTED: hypothetical protein 
PRPF38B               0.184   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
TCHH                  0.172   trichohyalin 
CROP                  0.163   cisplatin resistance-associated overexpressed protei...
CROP                  0.163   cisplatin resistance-associated overexpressed protei...
BAT2D1                0.159   HBxAg transactivated protein 2 
ACIN1                 0.158   apoptotic chromatin condensation inducer 1 
DIDO1                 0.150   death inducer-obliterator 1 isoform c 
PPIG                  0.145   peptidylprolyl isomerase G 
CALD1                 0.140   caldesmon 1 isoform 1 
RSRC2                 0.140   arginine/serine-rich coiled-coil 2 isoform a 
LOC100170229          0.138   hypothetical protein LOC100170229 
LOC283767             0.138   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.138   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.138   PREDICTED: golgi autoantigen, golgin subfamily a-li...
TRAF3IP1              0.136   TNF receptor-associated factor 3 interacting protein...
TRAF3IP1              0.133   TNF receptor-associated factor 3 interacting protei...
DDX46                 0.133   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
LOC727832             0.131   golgi autoantigen, golgin subfamily a-like 
DDX23                 0.131   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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