Guide to the Human Genome
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Name: TCEA2 Sequence: fasta or formatted (272aa) NCBI GI: 38505156
Description:

transcription elongation factor A protein 2 isoform b

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt prot [299aa] transcription elongation factor A protein 2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         23           2
 C cysteine            4.0         11           1
 D aspartate           6.2         17           1
 E glutamate           6.6         18           2
 F phenylalanine       1.8          5           1
 G glycine             3.7         10           2
 H histidine           1.5          4           1
 I isoleucine          4.4         12           1
 K lysine              7.4         20           2
 L leucine             7.7         21           2
 M methionine          4.0         11           1
 N asparagine          3.7         10           1
 P proline             5.5         15           2
 Q glutamine           3.7         10           2
 R arginine            9.6         26           2
 S serine              7.0         19           2
 T threonine           8.1         22           2
 V valine              5.1         14           2
 W tryptophan          0.7          2           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription elongation factor A protein 2 isoform ... 
TCEA2                 1.000   transcription elongation factor A protein 2 isoform a...
LOC100289899          0.645   PREDICTED: hypothetical protein XP_002347041 
TCEA1                 0.645   transcription elongation factor A 1 isoform 1 
TCEA1                 0.601   transcription elongation factor A 1 isoform 2 
TCEA3                 0.542   transcription elongation factor A (SII), 3 
TCEANC                0.185   TFIIS central domain-containing protein 1 
PHF3                  0.071   PHD finger protein 3 
DIDO1                 0.048   death inducer-obliterator 1 isoform c 
DIDO1                 0.048   death inducer-obliterator 1 isoform b 
MED26                 0.048   mediator complex subunit 26 
SPOCD1                0.046   SPOC domain containing 1 
POLR3K                0.044   DNA directed RNA polymerase III polypeptide K 
TCEB3                 0.036   elongin A 
C1orf83               0.031   hypothetical protein LOC127428 
PPP1R10               0.027   protein phosphatase 1, regulatory subunit 10 
CCDC80                0.027   steroid-sensitive protein 1 
CCDC80                0.027   steroid-sensitive protein 1 
ZNF383                0.023   zinc finger protein 383 
TCEB3CL               0.021   transcription elongation factor B polypeptide 3C-li...
TCEB3C                0.021   transcription elongation factor B polypeptide 3C [H...
ZNF12                 0.021   zinc finger protein 12 isoform b 
ZNF12                 0.021   zinc finger protein 12 isoform a 
ZNF567                0.019   zinc finger protein 567 
ZNF776                0.019   zinc finger protein 776 
TCEB3B                0.019   elongin A2 
ZFP2                  0.017   zinc finger protein 2 homolog 
ZNF248                0.017   zinc finger protein 248 
ZNF570                0.015   zinc finger protein 570 
ZNF529                0.015   zinc finger protein 529 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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