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Search of human proteins with 7662002
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7662002 ER degradation enhancer, mannosidase alpha-like 1
[Homo sapiens]
(657 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7662002 ER degradation enhancer, mannosidase alpha-like 1 [Ho... 1358 0.0
gi|163310725 ER degradation enhancer, mannosidase alpha-like 3 [... 384 e-106
gi|222537737 ER degradation enhancer, mannosidase alpha-like 2 i... 355 7e-98
gi|222537739 ER degradation enhancer, mannosidase alpha-like 2 i... 328 7e-90
gi|218749883 alpha 1,2-mannosidase [Homo sapiens] 188 2e-47
gi|5729913 mannosidase, alpha, class 1A, member 2 [Homo sapiens] 175 1e-43
gi|24497519 mannosidase, alpha, class 1A, member 1 [Homo sapiens] 164 2e-40
gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens] 157 2e-38
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 45 2e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 39 0.015
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 39 0.015
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 38 0.026
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 37 0.058
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 37 0.058
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 37 0.058
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 37 0.075
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 37 0.075
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 36 0.098
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 36 0.098
gi|48762934 alpha 2 type I collagen [Homo sapiens] 36 0.13
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 36 0.13
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 36 0.13
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 36 0.13
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 35 0.22
gi|33286446 opioid growth factor receptor [Homo sapiens] 35 0.29
gi|118498339 EMI domain containing 2 [Homo sapiens] 35 0.29
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 34 0.37
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 34 0.37
gi|38373671 SEC24-related protein C [Homo sapiens] 34 0.37
gi|38373669 SEC24-related protein C [Homo sapiens] 34 0.37
>gi|7662002 ER degradation enhancer, mannosidase alpha-like 1 [Homo
sapiens]
Length = 657
Score = 1358 bits (3515), Expect = 0.0
Identities = 657/657 (100%), Positives = 657/657 (100%)
Query: 1 MQWRALVLGLVLLRLGLHGVLWLVFGLGPSMGFYQRFPLSFGFQRLRSPDGPASPTSGPV 60
MQWRALVLGLVLLRLGLHGVLWLVFGLGPSMGFYQRFPLSFGFQRLRSPDGPASPTSGPV
Sbjct: 1 MQWRALVLGLVLLRLGLHGVLWLVFGLGPSMGFYQRFPLSFGFQRLRSPDGPASPTSGPV 60
Query: 61 GRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPANWGYVLGGRGRGPDEYEKRYSG 120
GRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPANWGYVLGGRGRGPDEYEKRYSG
Sbjct: 61 GRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPANWGYVLGGRGRGPDEYEKRYSG 120
Query: 121 AFPPQLRAQMRDLARGMFVFGYDNYMAHAFPQDELNPIHCRGRGPDRGDPSNLNINDVLG 180
AFPPQLRAQMRDLARGMFVFGYDNYMAHAFPQDELNPIHCRGRGPDRGDPSNLNINDVLG
Sbjct: 121 AFPPQLRAQMRDLARGMFVFGYDNYMAHAFPQDELNPIHCRGRGPDRGDPSNLNINDVLG 180
Query: 181 NYSLTLVDALDTLAIMGNSSEFQKAVKLVINTVSFDKDSTVQVFEATIRVLGSLLSAHRI 240
NYSLTLVDALDTLAIMGNSSEFQKAVKLVINTVSFDKDSTVQVFEATIRVLGSLLSAHRI
Sbjct: 181 NYSLTLVDALDTLAIMGNSSEFQKAVKLVINTVSFDKDSTVQVFEATIRVLGSLLSAHRI 240
Query: 241 ITDSKQPFGDMTIKDYDNELLYMAHDLAVRLLPAFENTKTGIPYPRVNLKTGVPPDTNNE 300
ITDSKQPFGDMTIKDYDNELLYMAHDLAVRLLPAFENTKTGIPYPRVNLKTGVPPDTNNE
Sbjct: 241 ITDSKQPFGDMTIKDYDNELLYMAHDLAVRLLPAFENTKTGIPYPRVNLKTGVPPDTNNE 300
Query: 301 TCTAGAGSLLVEFGILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTGHWVG 360
TCTAGAGSLLVEFGILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTGHWVG
Sbjct: 301 TCTAGAGSLLVEFGILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTGHWVG 360
Query: 361 KQSGLGAGLDSFYEYLLKSYILFGEKEDLEMFNAAYQSIQNYLRRGREACNEGEGDPPLY 420
KQSGLGAGLDSFYEYLLKSYILFGEKEDLEMFNAAYQSIQNYLRRGREACNEGEGDPPLY
Sbjct: 361 KQSGLGAGLDSFYEYLLKSYILFGEKEDLEMFNAAYQSIQNYLRRGREACNEGEGDPPLY 420
Query: 421 VNVNMFSGQLMNTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYNWQL 480
VNVNMFSGQLMNTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYNWQL
Sbjct: 421 VNVNMFSGQLMNTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYNWQL 480
Query: 481 QAPDVLFYPLRPELVESTYLLYQATKNPFYLHVGMDILQSLEKYTKVKCGYATLHHVIDK 540
QAPDVLFYPLRPELVESTYLLYQATKNPFYLHVGMDILQSLEKYTKVKCGYATLHHVIDK
Sbjct: 481 QAPDVLFYPLRPELVESTYLLYQATKNPFYLHVGMDILQSLEKYTKVKCGYATLHHVIDK 540
Query: 541 STEDRMESFFLSETCKYLYLLFDEDNPVHKSGTRYMFTTEGHIVSVDEHLRELPWKEFFS 600
STEDRMESFFLSETCKYLYLLFDEDNPVHKSGTRYMFTTEGHIVSVDEHLRELPWKEFFS
Sbjct: 541 STEDRMESFFLSETCKYLYLLFDEDNPVHKSGTRYMFTTEGHIVSVDEHLRELPWKEFFS 600
Query: 601 EEGGQDQGGKSVHRPKPHELKVINSSSNCNRVPDERRYSLPLKSIYMRQIDQMVGLI 657
EEGGQDQGGKSVHRPKPHELKVINSSSNCNRVPDERRYSLPLKSIYMRQIDQMVGLI
Sbjct: 601 EEGGQDQGGKSVHRPKPHELKVINSSSNCNRVPDERRYSLPLKSIYMRQIDQMVGLI 657
>gi|163310725 ER degradation enhancer, mannosidase alpha-like 3
[Homo sapiens]
Length = 932
Score = 384 bits (986), Expect = e-106
Identities = 208/454 (45%), Positives = 284/454 (62%), Gaps = 22/454 (4%)
Query: 137 MFVFGYDNYMAHAFPQDELNPIHCRGRGPDRGDPSNLNINDVLGNYSLTLVDALDTLAIM 196
MF Y NYM HA+P DEL P+ CRGR + +PS +++D LG +SLTL+D+LDTL ++
Sbjct: 59 MFDHAYGNYMEHAYPADELMPLTCRGRVRGQ-EPSRGDVDDALGKFSLTLIDSLDTLVVL 117
Query: 197 GNSSEFQKAVKLVINTVSFDKDSTVQVFEATIRVLGSLLSAHRIITDSKQPFGDMTIKDY 256
+ EF+ AV+ V+ V+ D D V VFE IRVLG LL H + K+ M + Y
Sbjct: 118 NKTKEFEDAVRKVLRDVNLDNDVVVSVFETNIRVLGGLLGGHSLAIMLKEKGEYM--QWY 175
Query: 257 DNELLYMAHDLAVRLLPAFENTKTGIPYPRVNLKTGV-PPD----TNNETCTAGAGSLLV 311
++ELL MA L +LLPAF NT +G+PYPR+NLK G+ P+ T +TCTA AG+L++
Sbjct: 176 NDELLQMAKQLGYKLLPAF-NTTSGLPYPRINLKFGIRKPEARTGTETDTCTACAGTLIL 234
Query: 312 EFGILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTGHWVGKQSGLGAGLDS 371
EF LSR G + FE AR+A+ LW R + L+G +NI TG WV K SG+GAG+DS
Sbjct: 235 EFAALSRFTGATIFEEYARKALDFLWEKRQRSSNLVGVTINIHTGDWVRKDSGVGAGIDS 294
Query: 372 FYEYLLKSYILFGEKEDLEMFNAAYQSIQNYLRRGREACNEGEGDPPLYVNVNMFSGQL- 430
+YEYLLK+Y+L G+ LE FN Y +I Y+ PPL ++V++ L
Sbjct: 295 YYEYLLKAYVLLGDDSFLERFNTHYDAIMRYI-----------SQPPLLLDVHIHKPMLN 343
Query: 431 MNTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYNWQLQAPDVLFYPL 490
TW+D+L AFFPGLQVL GD+ AI H Y + K++ LPE + + +PL
Sbjct: 344 ARTWMDALLAFFPGLQVLKGDIRPAIETHEMLYQVIKKHNFLPEAFTTDFRV-HWAQHPL 402
Query: 491 RPELVESTYLLYQATKNPFYLHVGMDILQSLEKYTKVKCGYATLHHVIDKSTEDRMESFF 550
RPE ESTY LY+AT +P+YL VG ++++L KY +V CG+A + V S EDRM+SFF
Sbjct: 403 RPEFAESTYFLYKATGDPYYLEVGKTLIENLNKYARVPCGFAAMKDVRTGSHEDRMDSFF 462
Query: 551 LSETCKYLYLLFDEDNPVHKSGTRYMFTTEGHIV 584
L+E KYLYLLF + + Y+FTTE H++
Sbjct: 463 LAEMFKYLYLLFADKEDIIFDIEDYIFTTEAHLL 496
>gi|222537737 ER degradation enhancer, mannosidase alpha-like 2
isoform 1 [Homo sapiens]
Length = 578
Score = 355 bits (911), Expect = 7e-98
Identities = 214/525 (40%), Positives = 305/525 (58%), Gaps = 64/525 (12%)
Query: 128 AQMRDLARGMFVFGYDNYMAHAFPQDELNPIHCRGRGPDRGDPSNLNINDVLGNYSLTLV 187
A R+ + MF YD+Y+ +AFP DEL P+ C G +D G++SLTL+
Sbjct: 33 AHYRERVKAMFYHAYDSYLENAFPFDELRPLTCDG-------------HDTWGSFSLTLI 79
Query: 188 DALDTLAIMGNSSEFQKAVKLVINTVSFDKDSTVQVFEATIRVLGSLLSAHRIITDSKQP 247
DALDTL I+GN SEFQ+ V+++ ++V FD D VFE IRV+G LLSAH + SK+
Sbjct: 80 DALDTLLILGNVSEFQRVVEVLQDSVDFDIDVNASVFETNIRVVGGLLSAHLL---SKKA 136
Query: 248 FGDMTIK-DYDNELLYMAHDLAVRLLPAFENTKTGIPYPRVNLKTGVPPDTNNETCTAGA 306
++ LL MA + A +LLPAF+ T TG+PY VNL GV P TCTAG
Sbjct: 137 GVEVEAGWPCSGPLLRMAEEAARKLLPAFQ-TPTGMPYGTVNLLHGVNPGETPVTCTAGI 195
Query: 307 GSLLVEFGILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTGHWVGKQSGLG 366
G+ +VEF LS L GD FE VAR A+ LW RS D GL+GN +++ TG WV + +G+G
Sbjct: 196 GTFIVEFATLSSLTGDPVFEDVARVALMRLWESRS-DIGLVGNHIDVLTGKWVAQDAGIG 254
Query: 367 AGLDSFYEYLLKSYILFGEKEDLEMFNAAYQSIQNYLRRGREACNEGEGDPPLYVNVNMF 426
AG+DS++EYL+K IL +K+ + MF ++I+NY R Y+ V M+
Sbjct: 255 AGVDSYFEYLVKGAILLQDKKLMAMFLEYNKAIRNYTRFD-----------DWYLWVQMY 303
Query: 427 SGQLMNTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYN----WQLQA 482
G + SL+A++PGLQ LIGD+++A+ YY +WK++G LPE YN + ++
Sbjct: 304 KGTVSMPVFQSLEAYWPGLQSLIGDIDNAMRTFLNYYTVWKQFGGLPEFYNIPQGYTVEK 363
Query: 483 PDVLFYPLRPELVESTYLLYQATKNPFYLHVGMDILQSLEKYTKVKCGYATLHHVIDKST 542
+ YPLRPEL+ES LY+AT +P L +G D ++S+EK +KV+CG+AT+ + D
Sbjct: 364 REG--YPLRPELIESAMYLYRATGDPTLLELGRDAVESIEKISKVECGFATIKDLRDHKL 421
Query: 543 EDRMESFFLSETCKYLYLLFDEDNPVHKSGTR-----------------YMFTTEGHIVS 585
++RMESFFL+ET KYLYLLFD N +H +G+ Y+F TE H +
Sbjct: 422 DNRMESFFLAETVKYLYLLFDPTNFIHNNGSTFDAVITPYGECILGAGGYIFNTEAHPID 481
Query: 586 -----VDEHLRELPW------KEFFSEEGGQDQGGKSVHRPKPHE 619
+ L+E W +EF+S + + + K+ P E
Sbjct: 482 PAALHCCQRLKEEQWEVEDLMREFYSLKRSRSKFQKNTVSSGPWE 526
>gi|222537739 ER degradation enhancer, mannosidase alpha-like 2
isoform 2 [Homo sapiens]
Length = 541
Score = 328 bits (842), Expect = 7e-90
Identities = 203/498 (40%), Positives = 288/498 (57%), Gaps = 56/498 (11%)
Query: 155 LNPIHCRGRGPDRGDPSNLNINDVLGNYSLTLVDALDTLAIMGNSSEFQKAVKLVINTVS 214
L P H GPD P + + +SLTL+DALDTL I+GN SEFQ+ V+++ ++V
Sbjct: 15 LLPQHHGAPGPDGSAPDPAHYS-----FSLTLIDALDTLLILGNVSEFQRVVEVLQDSVD 69
Query: 215 FDKDSTVQVFEATIRVLGSLLSAHRIITDSKQPFGDMTIK-DYDNELLYMAHDLAVRLLP 273
FD D VFE IRV+G LLSAH + SK+ ++ LL MA + A +LLP
Sbjct: 70 FDIDVNASVFETNIRVVGGLLSAHLL---SKKAGVEVEAGWPCSGPLLRMAEEAARKLLP 126
Query: 274 AFENTKTGIPYPRVNLKTGVPPDTNNETCTAGAGSLLVEFGILSRLLGDSTFEWVARRAV 333
AF+ T TG+PY VNL GV P TCTAG G+ +VEF LS L GD FE VAR A+
Sbjct: 127 AFQ-TPTGMPYGTVNLLHGVNPGETPVTCTAGIGTFIVEFATLSSLTGDPVFEDVARVAL 185
Query: 334 KALWNLRSNDTGLLGNVVNIQTGHWVGKQSGLGAGLDSFYEYLLKSYILFGEKEDLEMFN 393
LW RS D GL+GN +++ TG WV + +G+GAG+DS++EYL+K IL +K+ + MF
Sbjct: 186 MRLWESRS-DIGLVGNHIDVLTGKWVAQDAGIGAGVDSYFEYLVKGAILLQDKKLMAMFL 244
Query: 394 AAYQSIQNYLRRGREACNEGEGDPPLYVNVNMFSGQLMNTWIDSLQAFFPGLQVLIGDVE 453
++I+NY R Y+ V M+ G + SL+A++PGLQ LIGD++
Sbjct: 245 EYNKAIRNYTRFD-----------DWYLWVQMYKGTVSMPVFQSLEAYWPGLQSLIGDID 293
Query: 454 DAICLHAFYYAIWKRYGALPERYN----WQLQAPDVLFYPLRPELVESTYLLYQATKNPF 509
+A+ YY +WK++G LPE YN + ++ + YPLRPEL+ES LY+AT +P
Sbjct: 294 NAMRTFLNYYTVWKQFGGLPEFYNIPQGYTVEKREG--YPLRPELIESAMYLYRATGDPT 351
Query: 510 YLHVGMDILQSLEKYTKVKCGYATLHHVIDKSTEDRMESFFLSETCKYLYLLFDEDNPVH 569
L +G D ++S+EK +KV+CG+AT+ + D ++RMESFFL+ET KYLYLLFD N +H
Sbjct: 352 LLELGRDAVESIEKISKVECGFATIKDLRDHKLDNRMESFFLAETVKYLYLLFDPTNFIH 411
Query: 570 KSGTR-----------------YMFTTEGHIVS-----VDEHLRELPW------KEFFSE 601
+G+ Y+F TE H + + L+E W +EF+S
Sbjct: 412 NNGSTFDAVITPYGECILGAGGYIFNTEAHPIDPAALHCCQRLKEEQWEVEDLMREFYSL 471
Query: 602 EGGQDQGGKSVHRPKPHE 619
+ + + K+ P E
Sbjct: 472 KRSRSKFQKNTVSSGPWE 489
>gi|218749883 alpha 1,2-mannosidase [Homo sapiens]
Length = 699
Score = 188 bits (477), Expect = 2e-47
Identities = 158/474 (33%), Positives = 230/474 (48%), Gaps = 66/474 (13%)
Query: 137 MFVFGYDNYMAHAFPQDELNPIHCRGRGPDRGDPSNLNINDVLGNYSLTLVDALDTLAIM 196
+F+ + Y A+ DEL P+ + + ++ G LTL+DALDT+ I+
Sbjct: 256 VFLHAWKGYRKFAWGHDELKPV-------------SRSFSEWFG-LGLTLIDALDTMWIL 301
Query: 197 GNSSEFQKAVKLVINTVSFDKDSTVQVFEATIRVLGSLLSAHRIITDSKQPFGDMTIKDY 256
G EF++A K V + F+KD V +FE+TIR+LG LLSA+ + DS
Sbjct: 302 GLRKEFEEARKWVSKKLHFEKDVDVNLFESTIRILGGLLSAYHLSGDSL----------- 350
Query: 257 DNELLYMAHDLAVRLLPAFENTKTGIPYPRVNLKTGV--PPDTNNETCTAGAGSLLVEFG 314
L A D RL+PAF T + IPY VN+ TGV PP +++ A S+ +EF
Sbjct: 351 ---FLRKAEDFGNRLMPAF-RTPSKIPYSDVNIGTGVAHPPRWTSDSTVAEVTSIQLEFR 406
Query: 315 ILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTGHWVG-KQSGLGAGLDSFY 373
LSRL GD F+ + + + L GL+ +N +G + LGA DS+Y
Sbjct: 407 ELSRLTGDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYY 466
Query: 374 EYLLKSYILFGEKED--LEMFNAAYQSIQNYLRRGREACNEGEGDPPLYVNVNMFSGQLM 431
EYLLK +I G++E LE + A + ++ +L R +P V +
Sbjct: 467 EYLLKQWIQGGKQETQLLEDYVEAIEGVRTHLLR--------HSEPSKLTFVGELAHGRF 518
Query: 432 NTWIDSLQAFFPGLQVL-------IGDVEDAICLHAFYYAIWKRY--GALPERYNWQLQA 482
+ +D L F PG L +E A L Y + ++ G PE ++ L
Sbjct: 519 SAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHFNLYP 578
Query: 483 P----DVLFYP------LRPELVESTYLLYQATKNPFYLHVGMDILQSLEKYTKVKC-GY 531
DV P LRPE VES + LY+ T + Y G +ILQS ++T+V GY
Sbjct: 579 QPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGY 638
Query: 532 ATLHHVID---KSTEDRMESFFLSETCKYLYLLFDEDNPVHKSGTRYMFTTEGH 582
+++++V D D+MESFFL ET KYL+LLF +D P S Y+F TE H
Sbjct: 639 SSINNVQDPQKPEPRDKMESFFLGETLKYLFLLFSDD-PNLLSLDAYVFNTEAH 691
>gi|5729913 mannosidase, alpha, class 1A, member 2 [Homo sapiens]
Length = 641
Score = 175 bits (444), Expect = 1e-43
Identities = 154/503 (30%), Positives = 243/503 (48%), Gaps = 59/503 (11%)
Query: 103 VLGGRGRGPDEYEKRYSGAFPPQLRAQMRDLARGMFVFGYDNYMAHAFPQDELNPIHCRG 162
++G RG P++ + R + R+ + M +DNY + + +EL PI +G
Sbjct: 164 LVGIRGGDPEDNDIR-----------EKREKIKEMMKHAWDNYRTYGWGHNELRPIARKG 212
Query: 163 RGPDRGDPSNLNINDVLGNYSLTLVDALDTLAIMGNSSEFQKAVKLVINTVSFDKDSTVQ 222
P+ S + T+VDALDTL IMG EF + + + + F +S V
Sbjct: 213 HSPNIFGSSQMGA---------TIVDALDTLYIMGLHDEFLDGQRWIEDNLDFSVNSEVS 263
Query: 223 VFEATIRVLGSLLSAHRIITDSKQPFGDMTIKDYDNELLYMAHDLAVRLLPAFENTKTGI 282
VFE IR +G LL+A+ + G+ K A LA +LLPAF NT TGI
Sbjct: 264 VFEVNIRFIGGLLAAYYL-------SGEEIFK-------IKAVQLAEKLLPAF-NTPTGI 308
Query: 283 PYPRVNLKTGVPPD----TNNETCTAGAGSLLVEFGILSRLLGDSTFEWVARRAVKALWN 338
P+ VNLK+GV + + + A G+L +EF LS L GD T+ + ++ L
Sbjct: 309 PWAMVNLKSGVGRNWGWASAGSSILAEFGTLHMEFIHLSYLTGDLTY-YKKVMHIRKLLQ 367
Query: 339 LRSNDTGLLGNVVNIQTGHWVGKQSGLGAGLDSFYEYLLKSYILFGEKEDLE---MFNAA 395
GL N +N +TG W + +G DSFYEYLLK++ L +K D E M++ A
Sbjct: 368 KMDRPNGLYPNYLNPRTGRWGQYHTSVGGLGDSFYEYLLKAW-LMSDKTDHEARKMYDDA 426
Query: 396 YQSIQNYL----RRGREACNEGEGD--PPLYVNVNMFSGQLMNTWIDSLQAFFPGLQVLI 449
++I+ +L R G E + ++ F+G + D +A G + +
Sbjct: 427 IEAIEKHLIKKSRGGLTFIGEWKNGHLEKKMGHLACFAGGMFALGADGSRADKAGHYLEL 486
Query: 450 GDVEDAICLHAFYYAIWKRYGALPERYNWQLQAPDV----LFYPLRPELVESTYLLYQAT 505
G E A H Y + G +++ ++A V +Y LRPE++E+ + L++ T
Sbjct: 487 G-AEIARTCHESYDRTALKLGPESFKFDGAVEAVAVRQAEKYYILRPEVIETYWYLWRFT 545
Query: 506 KNPFYLHVGMDILQSLEKYTKVKCGYATLHHVIDKST--EDRMESFFLSETCKYLYLLFD 563
+P Y G + ++EKY +V G++ + V + +D +SFFL+ET KYLYLLF
Sbjct: 546 HDPRYRQWGWEAALAIEKYCRVNGGFSGVKDVYSSTPTHDDVQQSFFLAETLKYLYLLFS 605
Query: 564 EDNPVHKSGTRYMFTTEGHIVSV 586
D+ + ++F TE H + V
Sbjct: 606 GDDLLPLD--HWVFNTEAHPLPV 626
>gi|24497519 mannosidase, alpha, class 1A, member 1 [Homo sapiens]
Length = 653
Score = 164 bits (415), Expect = 2e-40
Identities = 138/485 (28%), Positives = 235/485 (48%), Gaps = 65/485 (13%)
Query: 129 QMRDLARGMFVFGYDNYMAHAFPQDELNPIHCRGRGPDRGDPSNLNINDVLGNYSLTLVD 188
+ R + M ++NY +A+ +EL PI +G S+ ++ G T+VD
Sbjct: 194 EKRAKIKEMMKHAWNNYKGYAWGLNELKPI-------SKGGHSSSLFGNIKG---ATIVD 243
Query: 189 ALDTLAIMGNSSEFQKAVKLVINTVSFDKDSTVQVFEATIRVLGSLLSAHRIITDSKQPF 248
ALDTL IM EF++A V + F+ ++ + VFE IR +G LLSA+ + ++ F
Sbjct: 244 ALDTLFIMEMKHEFEEAKSWVEENLDFNVNAEISVFEVNIRFVGGLLSAYYL--SGEEIF 301
Query: 249 GDMTIKDYDNELLYMAHDLAVRLLPAFENTKTGIPYPRVNLKTGV----PPDTNNETCTA 304
+ +L V+LLPAF +T +GIP+ +N+K+G+ P + + A
Sbjct: 302 RKKAV------------ELGVKLLPAF-HTPSGIPWALLNMKSGIGRNWPWASGGSSILA 348
Query: 305 GAGSLLVEFGILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTGHWVGKQSG 364
G+L +EF LS L G+ F ++ + N GL N +N +G W
Sbjct: 349 EFGTLHLEFMHLSHLSGNPIFAEKVMN-IRTVLNKLEKPQGLYPNYLNPSSGQWGQHHVS 407
Query: 365 LGAGLDSFYEYLLKSYILFGEKEDLE---MFNAAYQSIQNYLRRGREACNEGEGDPPLYV 421
+G DSFYEYLLK++ L +K DLE M+ A Q+I+ +L R +
Sbjct: 408 VGGLGDSFYEYLLKAW-LMSDKTDLEAKKMYFDAVQAIETHLIRKSSSG---------LT 457
Query: 422 NVNMFSGQLMNTWIDSLQAFFPGLQVLIGD--------------VEDAICLHAFYYAIWK 467
+ + G L+ + L F G+ L D E A H Y +
Sbjct: 458 YIAEWKGGLLEHKMGHLTCFAGGMFALGADAAPEGMAQHYLELGAEIARTCHESYNRTFM 517
Query: 468 RYGALPERYNWQLQA----PDVLFYPLRPELVESTYLLYQATKNPFYLHVGMDILQSLEK 523
+ G R++ ++A + +Y LRPE++E+ +++ T +P Y + +++LE
Sbjct: 518 KLGPEAFRFDGGVEAIATRQNEKYYILRPEVMETYMYMWRLTHDPKYRKWAWEAVEALEN 577
Query: 524 YTKVKCGYATLH--HVIDKSTEDRMESFFLSETCKYLYLLFDEDNPVHKSGTRYMFTTEG 581
+ +V GY+ L +++ +S +D +SFFL+ET KYLYL+F +D+ + ++F +E
Sbjct: 578 HCRVNGGYSGLRDVYLLHESYDDVQQSFFLAETLKYLYLIFSDDDLLPLE--HWIFNSEA 635
Query: 582 HIVSV 586
H++ +
Sbjct: 636 HLLPI 640
>gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens]
Length = 630
Score = 157 bits (398), Expect = 2e-38
Identities = 150/499 (30%), Positives = 232/499 (46%), Gaps = 86/499 (17%)
Query: 125 QLRAQMRDLARGMFVFGYDNYMAHAFPQDELNPIHCRGRGPDRGDPSNLNINDVLGNYS- 183
Q+RAQ R+ + M F + +Y +A ++EL P+ G ++ G S
Sbjct: 170 QVRAQ-REKIKEMMQFAWQSYKRYAMGKNELRPLTKDGYE-----------GNMFGGLSG 217
Query: 184 LTLVDALDTLAIMGNSSEFQKAVKLVINTVSFDKDSTVQVFEATIRVLGSLLSAHRIITD 243
T++D+LDTL +M EFQ+A V + + +FE IR +G LLSA +
Sbjct: 218 ATVIDSLDTLYLMELKEEFQEAKAWVGESFHLNVSGEASLFEVNIRYIGGLLSAFYL--T 275
Query: 244 SKQPFGDMTIKDYDNELLYMAHDLAVRLLPAFENTKTGIPYPRVNLKTGVPPDTNNETCT 303
++ F I+ L +LLPAF NT TGIP V+ K+G N T
Sbjct: 276 GEEVFRIKAIR------------LGEKLLPAF-NTPTGIPKGVVSFKSG-----NWGWAT 317
Query: 304 AGAGSLLVEFGI-------LSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTG 356
AG+ S+L EFG L+ L G+ F R K L + GL N ++ +G
Sbjct: 318 AGSSSILAEFGSLHLEFLHLTELSGNQVFAEKVRNIRKVLRKI-EKPFGLYPNFLSPVSG 376
Query: 357 HWVGKQSGLGAGLDSFYEYLLKSYILFGEKEDLE---MFNAAYQSIQNYLRRGREACNEG 413
+WV +G DSFYEYL+KS+++ G K D+E M+ A ++I+ YL
Sbjct: 377 NWVQHHVSVGGLGDSFYEYLIKSWLMSG-KTDMEAKNMYYEALEAIETYLL--------- 426
Query: 414 EGDPPLYVNVNMFSGQLMNTWIDSLQAFFPGLQVLIGDVEDA----------------IC 457
P + + G +++ + L F G+ L EDA
Sbjct: 427 NVSPGGLTYIAEWRGGILDHKMGHLACFSGGMIAL--GAEDAKEEKRAHYRELAAQITKT 484
Query: 458 LHAFYYAIWKRYGALPERYNWQLQAPDVL-------FYPLRPELVESTYLLYQATKNPFY 510
H Y + G PE + W + + +Y LRPE+VES L++ T NP Y
Sbjct: 485 CHESYARSDTKLG--PEAF-WFNSGREAVATQLSESYYILRPEVVESYMYLWRQTHNPIY 541
Query: 511 LHVGMDILQSLEKYTKVKCGYATLHHVIDKST--EDRMESFFLSETCKYLYLLFDEDNPV 568
G +++ +LEKY + + G++ + V + +++ +SFFL+ET KYLYLLF ED+ +
Sbjct: 542 REWGWEVVLALEKYCRTEAGFSGIQDVYSSTPNHDNKQQSFFLAETLKYLYLLFSEDDLL 601
Query: 569 HKSGTRYMFTTEGHIVSVD 587
S ++F TE H + V+
Sbjct: 602 --SLEDWVFNTEAHPLPVN 618
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 45.4 bits (106), Expect = 2e-04
Identities = 30/73 (41%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 49 PDGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKA-PRRPGPGMCGPANWGYVLGGR 107
P GP P GP G PGG GP L PP PR P GPG P G + GG
Sbjct: 644 PPGPGGPMPGPHGGPGGPVGPRLLGPP-----PPPRGGDPFWDGPG--DPMRGGPMRGGP 696
Query: 108 GRGPDEYEKRYSG 120
G GP Y + G
Sbjct: 697 GPGPGPYHRGRGG 709
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 38.9 bits (89), Expect = 0.015
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 20/79 (25%)
Query: 47 RSPDGPASPTS--------GPVGRPG-----GVSGPSWLQPPGTGAAQSPRKAPRRPGPG 93
R P GP P+ GP+G PG G +GP+ PPG P P PGPG
Sbjct: 1163 RGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG--PPGNPGPPGP---PGPPGPG 1217
Query: 94 MCGPANWGYVLGGRGRGPD 112
+ A G LG R +GPD
Sbjct: 1218 IDMSAFAG--LGPREKGPD 1234
Score = 36.2 bits (82), Expect = 0.098
Identities = 32/99 (32%), Positives = 36/99 (36%), Gaps = 18/99 (18%)
Query: 47 RSPDGPASPT--SGPVGRPGGVSGPSWLQPPGTGAAQSPR---------KAPRRPG-PGM 94
R P GP P +GP G PG P PPG A + AP PG PG
Sbjct: 1016 RGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGS 1075
Query: 95 CGPANWGYVLGGRGRGPDEYEKRYSGAFPPQLRAQMRDL 133
GPA G G+ D E G P A R +
Sbjct: 1076 PGPA------GPTGKQGDRGEAGAQGPMGPSGPAGARGI 1108
Score = 34.3 bits (77), Expect = 0.37
Identities = 39/136 (28%), Positives = 46/136 (33%), Gaps = 15/136 (11%)
Query: 47 RSPDGPASPT-----SGPVGRPGGVSGPSWLQPPGTGAAQSPRKA------PRRPG-PGM 94
R GP T +G VG PG P PPG P+ A P R G PG+
Sbjct: 887 RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGL 946
Query: 95 CGPANWGYVLGGRGRGPDEYEKRYSGAFPPQLRAQMRDLARGMFVFGYDNYMAHAFPQDE 154
GPA G +G D+ G PQ A R + G + P E
Sbjct: 947 QGPAG---PPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGE 1003
Query: 155 LNPIHCRGRGPDRGDP 170
G DRG P
Sbjct: 1004 PGKQGAPGASGDRGPP 1019
Score = 32.7 bits (73), Expect = 1.1
Identities = 41/147 (27%), Positives = 51/147 (34%), Gaps = 23/147 (15%)
Query: 49 PDGPASPTSGP--VGRPG--------GVSGPSWLQ----PPGTGAAQSPRKAPRRPG--- 91
P GP P GP G PG G GP Q PGT + P A PG
Sbjct: 355 PPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG 414
Query: 92 -PGMCGPANWGYVLGGRG----RGPDEYEKRYSGAFPPQLRAQMRDLARGMFVFGYDNYM 146
PG G A + G G RGP + +G P+ + +A G
Sbjct: 415 IPGAKGSAGAPGIAGAPGFPGPRGPPG-PQGATGPLGPKGQTGEPGIAGFKGEQGPKGEP 473
Query: 147 AHAFPQDELNPIHCRGRGPDRGDPSNL 173
A PQ P G+ RG+P +
Sbjct: 474 GPAGPQGAPGPAGEEGKRGARGEPGGV 500
Score = 32.3 bits (72), Expect = 1.4
Identities = 26/69 (37%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 46 LRSPDGPASPTS--GPVGRPG--GVSG-PSWLQPPGTGAAQSPRKAPRRPG-PGMCGPAN 99
++ P GP P GP G PG G G P PG PR P PG PG G A
Sbjct: 199 MQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAG 258
Query: 100 WGYVLGGRG 108
G RG
Sbjct: 259 KPGKAGERG 267
Score = 32.3 bits (72), Expect = 1.4
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 57 SGPVGRPG--GVSGPSW-LQPPGTGAAQSPRKAPRR------PGP-GMCGPANWGYVLGG 106
+GP+G PG G +G + PPG + R AP PGP G GP G
Sbjct: 788 TGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGA 847
Query: 107 RGRGPDEYEKRYSGAFPPQ 125
+G + +K +GA PQ
Sbjct: 848 KGEQGEAGQKGDAGAPGPQ 866
Score = 32.0 bits (71), Expect = 1.9
Identities = 27/82 (32%), Positives = 28/82 (34%), Gaps = 18/82 (21%)
Query: 35 QRFPLSFGFQRLRSPDGPASPTSGP--VGRPGGVSGPSWLQP------------PGTGAA 80
Q P GFQ L P GP P G PG P + P PG
Sbjct: 656 QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGL 715
Query: 81 QSPRKAPRRPG----PGMCGPA 98
Q PR P PG G GPA
Sbjct: 716 QGPRGLPGTPGTDGPKGASGPA 737
Score = 30.8 bits (68), Expect = 4.1
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 47 RSPDGPASPTSGPVGRPGGVSGPSWLQPPG-------TGA-----AQSPRKAPRRPG-PG 93
R DG P +GP G G GP + PG TGA AQ PR P PG PG
Sbjct: 344 RGNDGQPGP-AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPG 402
Query: 94 MCG 96
G
Sbjct: 403 PAG 405
Score = 30.8 bits (68), Expect = 4.1
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 58 GPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGP-GMCGP 97
GP+G PG P PG P+ AP GP G+ GP
Sbjct: 501 GPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP 541
Score = 30.4 bits (67), Expect = 5.4
Identities = 27/76 (35%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 42 GFQRLRSPDG-PASP-TSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGP------- 92
G Q L+ P G P +P T GP G G P PPG R A GP
Sbjct: 711 GAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV 770
Query: 93 GMCGPANWGYVLGGRG 108
G GP GGRG
Sbjct: 771 GEKGPEGAPGKDGGRG 786
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 38.9 bits (89), Expect = 0.015
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 20/79 (25%)
Query: 47 RSPDGPASPTS--------GPVGRPG-----GVSGPSWLQPPGTGAAQSPRKAPRRPGPG 93
R P GP P+ GP+G PG G +GP+ PPG P P PGPG
Sbjct: 1094 RGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG--PPGNPGPPGP---PGPPGPG 1148
Query: 94 MCGPANWGYVLGGRGRGPD 112
+ A G LG R +GPD
Sbjct: 1149 IDMSAFAG--LGPREKGPD 1165
Score = 36.2 bits (82), Expect = 0.098
Identities = 32/99 (32%), Positives = 36/99 (36%), Gaps = 18/99 (18%)
Query: 47 RSPDGPASPT--SGPVGRPGGVSGPSWLQPPGTGAAQSPR---------KAPRRPG-PGM 94
R P GP P +GP G PG P PPG A + AP PG PG
Sbjct: 947 RGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGS 1006
Query: 95 CGPANWGYVLGGRGRGPDEYEKRYSGAFPPQLRAQMRDL 133
GPA G G+ D E G P A R +
Sbjct: 1007 PGPA------GPTGKQGDRGEAGAQGPMGPSGPAGARGI 1039
Score = 34.3 bits (77), Expect = 0.37
Identities = 39/136 (28%), Positives = 46/136 (33%), Gaps = 15/136 (11%)
Query: 47 RSPDGPASPT-----SGPVGRPGGVSGPSWLQPPGTGAAQSPRKA------PRRPG-PGM 94
R GP T +G VG PG P PPG P+ A P R G PG+
Sbjct: 818 RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGL 877
Query: 95 CGPANWGYVLGGRGRGPDEYEKRYSGAFPPQLRAQMRDLARGMFVFGYDNYMAHAFPQDE 154
GPA G +G D+ G PQ A R + G + P E
Sbjct: 878 QGPAG---PPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGE 934
Query: 155 LNPIHCRGRGPDRGDP 170
G DRG P
Sbjct: 935 PGKQGAPGASGDRGPP 950
Score = 32.7 bits (73), Expect = 1.1
Identities = 41/147 (27%), Positives = 51/147 (34%), Gaps = 23/147 (15%)
Query: 49 PDGPASPTSGP--VGRPG--------GVSGPSWLQ----PPGTGAAQSPRKAPRRPG--- 91
P GP P GP G PG G GP Q PGT + P A PG
Sbjct: 286 PPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG 345
Query: 92 -PGMCGPANWGYVLGGRG----RGPDEYEKRYSGAFPPQLRAQMRDLARGMFVFGYDNYM 146
PG G A + G G RGP + +G P+ + +A G
Sbjct: 346 IPGAKGSAGAPGIAGAPGFPGPRGPPG-PQGATGPLGPKGQTGEPGIAGFKGEQGPKGEP 404
Query: 147 AHAFPQDELNPIHCRGRGPDRGDPSNL 173
A PQ P G+ RG+P +
Sbjct: 405 GPAGPQGAPGPAGEEGKRGARGEPGGV 431
Score = 32.3 bits (72), Expect = 1.4
Identities = 26/69 (37%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 46 LRSPDGPASPTS--GPVGRPG--GVSG-PSWLQPPGTGAAQSPRKAPRRPG-PGMCGPAN 99
++ P GP P GP G PG G G P PG PR P PG PG G A
Sbjct: 130 MQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAG 189
Query: 100 WGYVLGGRG 108
G RG
Sbjct: 190 KPGKAGERG 198
Score = 32.3 bits (72), Expect = 1.4
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 57 SGPVGRPG--GVSGPSW-LQPPGTGAAQSPRKAPRR------PGP-GMCGPANWGYVLGG 106
+GP+G PG G +G + PPG + R AP PGP G GP G
Sbjct: 719 TGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGA 778
Query: 107 RGRGPDEYEKRYSGAFPPQ 125
+G + +K +GA PQ
Sbjct: 779 KGEQGEAGQKGDAGAPGPQ 797
Score = 32.0 bits (71), Expect = 1.9
Identities = 27/82 (32%), Positives = 28/82 (34%), Gaps = 18/82 (21%)
Query: 35 QRFPLSFGFQRLRSPDGPASPTSGP--VGRPGGVSGPSWLQP------------PGTGAA 80
Q P GFQ L P GP P G PG P + P PG
Sbjct: 587 QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGL 646
Query: 81 QSPRKAPRRPG----PGMCGPA 98
Q PR P PG G GPA
Sbjct: 647 QGPRGLPGTPGTDGPKGASGPA 668
Score = 30.8 bits (68), Expect = 4.1
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 47 RSPDGPASPTSGPVGRPGGVSGPSWLQPPG-------TGA-----AQSPRKAPRRPG-PG 93
R DG P +GP G G GP + PG TGA AQ PR P PG PG
Sbjct: 275 RGNDGQPGP-AGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPG 333
Query: 94 MCG 96
G
Sbjct: 334 PAG 336
Score = 30.8 bits (68), Expect = 4.1
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 58 GPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGP-GMCGP 97
GP+G PG P PG P+ AP GP G+ GP
Sbjct: 432 GPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP 472
Score = 30.4 bits (67), Expect = 5.4
Identities = 27/76 (35%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 42 GFQRLRSPDG-PASP-TSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGP------- 92
G Q L+ P G P +P T GP G G P PPG R A GP
Sbjct: 642 GAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV 701
Query: 93 GMCGPANWGYVLGGRG 108
G GP GGRG
Sbjct: 702 GEKGPEGAPGKDGGRG 717
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 38.1 bits (87), Expect = 0.026
Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 42 GFQRLRSPDGPASPTSGPVGRPG--GVSGPSWLQPPGTGAAQSPRKAPRRPG-PGMCGPA 98
G QR+ P P P GP G+PG G+ G + PPG P+ AP +PG PG G
Sbjct: 24 GAQRVGLPGPPGPP--GPPGKPGQDGIDGEAG--PPGLPGPPGPKGAPGKPGKPGEAGLP 79
Query: 99 NWGYVLGGRGR-GP 111
V G GR GP
Sbjct: 80 GLPGVDGLTGRDGP 93
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 37.0 bits (84), Expect = 0.058
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 44 QRLRSPDGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPG----PGMCGPAN 99
Q LR P GP P P G PG ++ PPG+ P P PG PG+ G
Sbjct: 615 QLLRGPPGPPGPPGLP-GIPGKPGTDVFMGPPGSPGEDGPAGEPGPPGPEGQPGVDGATG 673
Query: 100 WGYVLGGRG-RGPD 112
+ G +G RGP+
Sbjct: 674 LPGMKGEKGARGPN 687
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 37.0 bits (84), Expect = 0.058
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 49 PDGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPANWGYVLG--- 105
P G GP PGG P +P TG Q P PR P GPA+ G+ G
Sbjct: 406 PSGAGPAREGPAAWPGGAPTPPHARP--TGRRQDPEPGPRAP---RGGPASSGWHAGSAA 460
Query: 106 GRGRGP 111
GRG P
Sbjct: 461 GRGWDP 466
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 37.0 bits (84), Expect = 0.058
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 49 PDGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPANWGYVLG--- 105
P G GP PGG P +P TG Q P PR P GPA+ G+ G
Sbjct: 406 PSGAGPAREGPAAWPGGAPTPPHARP--TGRRQDPEPGPRAP---RGGPASSGWHAGSAA 460
Query: 106 GRGRGP 111
GRG P
Sbjct: 461 GRGWDP 466
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 36.6 bits (83), Expect = 0.075
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
Query: 47 RSPDGPASPTSGPVGRPG--GVSGPSWLQ-PPGTGAAQSPRKAPRRPGP----GMCGP 97
R P GPA GP GR G G G + L+ PPG P+ AP +PGP G+ GP
Sbjct: 1392 RGPPGPA----GPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGP 1445
Score = 36.2 bits (82), Expect = 0.098
Identities = 42/141 (29%), Positives = 51/141 (36%), Gaps = 18/141 (12%)
Query: 42 GFQRLRSPDGPASPTS--GPVGRPGGVSGPSWLQPPGTGAAQSP---RKAPRRPGP---- 92
G Q L P G P GP+G+PG P PPG + P + PGP
Sbjct: 727 GAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPI 786
Query: 93 GMCGPANWGYVLGGRGRGPDEYEKRYSGAFPPQLRAQMRDLARGMFVFGYDNYMAHAFPQ 152
G GP G RG + EK G FP M + G + P+
Sbjct: 787 GYPGPRGVKGADGIRGLKGTKGEKGEDG-FP--------GFKGDMGIKGDRGEIGPPGPR 837
Query: 153 DELNPIHCRGRGPDRGDPSNL 173
E P +GRG GDP L
Sbjct: 838 GEDGPEGPKGRGGPNGDPGPL 858
Score = 31.2 bits (69), Expect = 3.2
Identities = 28/77 (36%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 42 GFQRLRSPDGPASP-----TSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGP-GMC 95
GF R GP GP G PG P P G A P P RPGP G
Sbjct: 1057 GFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAG---AAGPIGIPGRPGPQGPP 1113
Query: 96 GPANWGYVLGGRG-RGP 111
GPA G +G +GP
Sbjct: 1114 GPAGEKGAPGEKGPQGP 1130
Score = 30.8 bits (68), Expect = 4.1
Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 18/70 (25%)
Query: 46 LRSPDGPASPTS--GPVGRPG--GVSG-PSWLQPPGTGAAQSPRKAPRRPG--------- 91
LR P GP T GPVG PG G+ G P + P G Q P +PG
Sbjct: 557 LRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDG 616
Query: 92 ----PGMCGP 97
PG GP
Sbjct: 617 ARGMPGQTGP 626
Score = 30.8 bits (68), Expect = 4.1
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 16/81 (19%)
Query: 49 PDGPASPTS-----GPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPANWGYV 103
P GP P+ GP G PGG+ P G P +A PG GP
Sbjct: 1253 PPGPRGPSGAPGADGPQGPPGGIGNPG-----AVGEKGEPGEAGEPGLPGEGGPP----- 1302
Query: 104 LGGRGRGPDEYEKRYSGAFPP 124
G +G ++ E SGA P
Sbjct: 1303 -GPKGERGEKGESGPSGAAGP 1322
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 36.6 bits (83), Expect = 0.075
Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 47 RSPDGPASPTS--GPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPG-PGMCGPANWGYV 103
R P GPA G GRPG GP PPG Q + P RPG P + GPA V
Sbjct: 1497 RGPPGPAGSRGLPGVAGRPGA-KGPEG--PPGPTGRQGEKGEPGRPGDPAVVGPA----V 1549
Query: 104 LGGRGRGPD 112
G +G D
Sbjct: 1550 AGPKGEKGD 1558
Score = 32.7 bits (73), Expect = 1.1
Identities = 29/77 (37%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 42 GFQRLRSPDGPASPTS-GPVGRPGGVSGPSWLQ----PPGTGAAQSPRKAPRRPG-PGMC 95
G Q R P G P GP G PG GP L PPG + P RPG PG
Sbjct: 1569 GVQGERGPPGLVLPGDPGPKGDPGD-RGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPV 1627
Query: 96 GPANWGYVLGGRG-RGP 111
GP +G +G GP
Sbjct: 1628 GPRGRDGEVGEKGDEGP 1644
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 36.2 bits (82), Expect = 0.098
Identities = 30/85 (35%), Positives = 33/85 (38%), Gaps = 18/85 (21%)
Query: 42 GFQRLRSPDGPASP--------TSGPVGRPG--------GVSGPSWLQ-PPGTGAAQSPR 84
GF R P GP P SG G PG G GP +Q PPG + R
Sbjct: 410 GFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKR 469
Query: 85 KAPRRPGP-GMCGPANWGYVLGGRG 108
A PGP G+ GP G RG
Sbjct: 470 GARGEPGPTGLPGPPGERGGPGSRG 494
Score = 35.4 bits (80), Expect = 0.17
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 49 PDGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGP----GMCGPA 98
P GP P +GP G PG V P G ++ P+ PGP G GPA
Sbjct: 333 PPGPTGP-AGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPA 385
Score = 34.7 bits (78), Expect = 0.29
Identities = 26/75 (34%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 42 GFQRLRSPDGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPG----PGMCGP 97
GFQ L P GP G G+PG P L PG A+ R P G PG GP
Sbjct: 641 GFQGLPGPAGPP----GEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGP 696
Query: 98 ANWGYVLGGRGRGPD 112
G G D
Sbjct: 697 RGANGAPGNDGAKGD 711
Score = 32.7 bits (73), Expect = 1.1
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 57 SGPVGRPG--------GVSGPSW-LQPPGTGAAQSPRKAPRRPGP-GMCGPANWGYVLGG 106
+GP+G PG G SGPS P G A R P PGP G GP G
Sbjct: 766 TGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGA 825
Query: 107 RGRGPDEYEKRYSGAFPP 124
+G D K +G PP
Sbjct: 826 KGEPGDAGAKGDAG--PP 841
Score = 30.4 bits (67), Expect = 5.4
Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 15/75 (20%)
Query: 49 PDGPASPTS-----GPVGRPGGVSGPSWLQPP---------GTGAAQSPRKAPRRPGP-G 93
P GP P GP G G P + PP G+ A P AP PGP G
Sbjct: 894 PPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQG 953
Query: 94 MCGPANWGYVLGGRG 108
+ G + G RG
Sbjct: 954 IAGQRGVVGLPGQRG 968
Score = 30.0 bits (66), Expect = 7.1
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 47 RSPDGPASPTS-----GPVGRPG--GVSGPSWLQPPGTGAAQSPRKAPRRPG-PGMCGPA 98
+ P GPA P GP G PG G+ GP+ PPG + P G PG G
Sbjct: 619 QGPPGPAGPAGERGEQGPAGSPGFQGLPGPA--GPPGEAGKPGEQGVPGDLGAPGPSGAR 676
Query: 99 NWGYVLGGRG-RGP 111
G RG +GP
Sbjct: 677 GERGFPGERGVQGP 690
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 36.2 bits (82), Expect = 0.098
Identities = 24/69 (34%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 42 GFQRLRSPDGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGP-GMCGPANW 100
G+ P GP P G G PG P + PPG P P PG G GPA
Sbjct: 171 GYPGPAGPPGPPGPP-GTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGK 229
Query: 101 GYVLGGRGR 109
G GR
Sbjct: 230 DGESGRPGR 238
Score = 35.4 bits (80), Expect = 0.17
Identities = 27/63 (42%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 49 PDGPASPTSGPVGRPG--GVSGPSWLQP-PGTGAAQSPRKAPRRPGPGMCGPANWGYVLG 105
P GP PT GP G G G GP LQ PGTG P PGP G A G
Sbjct: 616 PQGPPGPT-GPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPK--GDAGAPGAPG 672
Query: 106 GRG 108
G+G
Sbjct: 673 GKG 675
Score = 34.3 bits (77), Expect = 0.37
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 49 PDGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPG-PGMCGP 97
P GP P SGP G+ G P + PPG + R + PG PG GP
Sbjct: 1138 PRGPVGP-SGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGP 1186
Score = 30.4 bits (67), Expect = 5.4
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 38 PLSFGFQRLRSPDGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPG 93
P GF + DG G G GG GP PPG P+ P GPG
Sbjct: 575 PGVMGFPGPKGNDG----APGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPG 626
Score = 30.0 bits (66), Expect = 7.1
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 51 GPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGP 97
GP P SGP G+PG + P P G A P K R GPG GP
Sbjct: 564 GPPGP-SGPRGQPGVMGFPG---PKGNDGA--PGKNGERGGPGGPGP 604
Score = 29.6 bits (65), Expect = 9.2
Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 50 DGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPG-PGMCGPANWGYVLGGRG 108
DGP GP G G P P G + +P G PG GP + G RG
Sbjct: 902 DGPP----GPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARG 957
Score = 29.6 bits (65), Expect = 9.2
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 48 SPDGPASPTSGPVGRPGGVSGPSWLQPPG-TGAAQSPRKAPRRPGPGMCGP 97
+P P SP GP G+ G + P P G G + P K PG GP
Sbjct: 1114 NPGAPGSP--GPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGP 1162
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 35.8 bits (81), Expect = 0.13
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 49 PDGPASPTSGPVGRPGGVSGPSWLQPPGTGAA---QSPRKAPRRPG-PGMCGPANWGYVL 104
P GPA P SGP G+ G P + P G Q P P PG PG G + GY
Sbjct: 1052 PRGPAGP-SGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPGVSGGGYDF 1110
Query: 105 GGRG 108
G G
Sbjct: 1111 GYDG 1114
Score = 34.3 bits (77), Expect = 0.37
Identities = 24/69 (34%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 49 PDGPASPT--------SGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGP-GMCGPAN 99
P GPA P SGPVG PG G AP PGP G+ GP
Sbjct: 275 PAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVG 334
Query: 100 WGYVLGGRG 108
G RG
Sbjct: 335 AAGATGARG 343
Score = 32.7 bits (73), Expect = 1.1
Identities = 41/130 (31%), Positives = 49/130 (37%), Gaps = 41/130 (31%)
Query: 42 GFQRLRSPDGPASPTSGPVGRPG--------GVSGPSWLQ----PPGTGAAQSP------ 83
GFQ L P GPA G VG+PG G+ GP+ + PPG A P
Sbjct: 553 GFQGLPGPSGPA----GEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGS 608
Query: 84 RKAPRRPGP-------------GMCGPANWGYVLGGRGRGPDEYEKRYSGAFPPQLRAQM 130
R PGP G GP+ + G RG K G P LR ++
Sbjct: 609 RGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKG--EPGLRGEI 666
Query: 131 ----RDLARG 136
RD ARG
Sbjct: 667 GNPGRDGARG 676
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 35.8 bits (81), Expect = 0.13
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 49 PDGPASPTSGP--VGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPANWGYVLGG 106
P+GPA P G PG V P PPG AP PG + P +G GG
Sbjct: 317 PEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFG--SGG 374
Query: 107 RGRGP 111
+GP
Sbjct: 375 GDKGP 379
Score = 35.8 bits (81), Expect = 0.13
Identities = 29/73 (39%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 49 PDGPASPTS--GPVGRPGGVSGPSWLQPPGTG------AAQSPRKAPRRPG-PGMCGPAN 99
P GP PT GP G PG V P PPG G A+ R PG PG GP
Sbjct: 1164 PPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTG 1223
Query: 100 WGYVLGGRG-RGP 111
G G RGP
Sbjct: 1224 ENGPPGPLGKRGP 1236
Score = 34.3 bits (77), Expect = 0.37
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 42 GFQRLRSPDGP--------ASPTSGPVGRPG--GVSGPSWLQP-PGTGAAQSPRKAPRRP 90
GFQ P GP A+ +GP+G G G GP Q PGT + + P P
Sbjct: 827 GFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPP 886
Query: 91 G-PGMCGPANWGYVLGGRG 108
G PG GPA G RG
Sbjct: 887 GAPGKDGPAGLRGFPGERG 905
Score = 30.8 bits (68), Expect = 4.1
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 42 GFQRLRSPDGPASP--TSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGP-GMCGPA 98
G Q L P G P GP G+PG P PPG + P GP G GP
Sbjct: 569 GTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPL 628
Query: 99 NWGYVLGGRG 108
+ G +G
Sbjct: 629 GYPGPRGVKG 638
Score = 30.0 bits (66), Expect = 7.1
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 42 GFQRLRSPDGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPG-PGMCGP 97
G + P GP P P G G + PPG Q P A G PG GP
Sbjct: 914 GLKGNEGPSGPPGPAGSP-GERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP 969
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 35.8 bits (81), Expect = 0.13
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 49 PDGPASPTSGP--VGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPANWGYVLGG 106
P+GPA P G PG V P PPG AP PG + P +G GG
Sbjct: 296 PEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFG--SGG 353
Query: 107 RGRGP 111
+GP
Sbjct: 354 GDKGP 358
Score = 35.8 bits (81), Expect = 0.13
Identities = 29/73 (39%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 49 PDGPASPTS--GPVGRPGGVSGPSWLQPPGTG------AAQSPRKAPRRPG-PGMCGPAN 99
P GP PT GP G PG V P PPG G A+ R PG PG GP
Sbjct: 1143 PPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTG 1202
Query: 100 WGYVLGGRG-RGP 111
G G RGP
Sbjct: 1203 ENGPPGPLGKRGP 1215
Score = 34.3 bits (77), Expect = 0.37
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 42 GFQRLRSPDGP--------ASPTSGPVGRPG--GVSGPSWLQP-PGTGAAQSPRKAPRRP 90
GFQ P GP A+ +GP+G G G GP Q PGT + + P P
Sbjct: 806 GFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPP 865
Query: 91 G-PGMCGPANWGYVLGGRG 108
G PG GPA G RG
Sbjct: 866 GAPGKDGPAGLRGFPGERG 884
Score = 30.8 bits (68), Expect = 4.1
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 42 GFQRLRSPDGPASP--TSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGP-GMCGPA 98
G Q L P G P GP G+PG P PPG + P GP G GP
Sbjct: 548 GTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPL 607
Query: 99 NWGYVLGGRG 108
+ G +G
Sbjct: 608 GYPGPRGVKG 617
Score = 30.0 bits (66), Expect = 7.1
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 42 GFQRLRSPDGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPG-PGMCGP 97
G + P GP P P G G + PPG Q P A G PG GP
Sbjct: 893 GLKGNEGPSGPPGPAGSP-GERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP 948
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 35.8 bits (81), Expect = 0.13
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 49 PDGPASPTSGP--VGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPANWGYVLGG 106
P+GPA P G PG V P PPG AP PG + P +G GG
Sbjct: 403 PEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFG--SGG 460
Query: 107 RGRGP 111
+GP
Sbjct: 461 GDKGP 465
Score = 35.8 bits (81), Expect = 0.13
Identities = 29/73 (39%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 49 PDGPASPTS--GPVGRPGGVSGPSWLQPPGTG------AAQSPRKAPRRPG-PGMCGPAN 99
P GP PT GP G PG V P PPG G A+ R PG PG GP
Sbjct: 1250 PPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTG 1309
Query: 100 WGYVLGGRG-RGP 111
G G RGP
Sbjct: 1310 ENGPPGPLGKRGP 1322
Score = 34.3 bits (77), Expect = 0.37
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 42 GFQRLRSPDGP--------ASPTSGPVGRPG--GVSGPSWLQP-PGTGAAQSPRKAPRRP 90
GFQ P GP A+ +GP+G G G GP Q PGT + + P P
Sbjct: 913 GFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPP 972
Query: 91 G-PGMCGPANWGYVLGGRG 108
G PG GPA G RG
Sbjct: 973 GAPGKDGPAGLRGFPGERG 991
Score = 30.8 bits (68), Expect = 4.1
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 42 GFQRLRSPDGPASP--TSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGP-GMCGPA 98
G Q L P G P GP G+PG P PPG + P GP G GP
Sbjct: 655 GTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPL 714
Query: 99 NWGYVLGGRG 108
+ G +G
Sbjct: 715 GYPGPRGVKG 724
Score = 30.0 bits (66), Expect = 7.1
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 42 GFQRLRSPDGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPG-PGMCGP 97
G + P GP P P G G + PPG Q P A G PG GP
Sbjct: 1000 GLKGNEGPSGPPGPAGSP-GERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGP 1055
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 35.0 bits (79), Expect = 0.22
Identities = 37/108 (34%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 51 GPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKA-----PRRPG-PGMCGPANWGYVL 104
GPA P GP G PG P PPG G A P A P PG PG+ GP
Sbjct: 469 GPAGPI-GPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPP 527
Query: 105 GGRGRGPDEYEKRYSGAFPPQLRAQMRDLAR-GMFVFGYDNYMAHAFP 151
G G E +G P + L + G FG AHA P
Sbjct: 528 GPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGGKPQFGLGELSAHATP 575
Score = 32.7 bits (73), Expect = 1.1
Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 42 GFQRLRSPDGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGP-GMCGPANW 100
G L P GP SG G PG P + P G G P PGP G GPA
Sbjct: 284 GAAGLPGPQGP----SGAKGEPGTRGPPGLIGPTGYG-------MPGLPGPKGDRGPAGV 332
Query: 101 GYVLGGRGRGPDEYEKRYSG 120
+LG RG ++ E G
Sbjct: 333 PGLLGDRGEPGEDGEPGEQG 352
Score = 30.0 bits (66), Expect = 7.1
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 49 PDGPASPTSGPVGRPGGVSGPSWLQPPG-TGAAQSPRKAPRRPGPGMCGPANWGYVLGGR 107
P P +P G P G+ GP+ L PG G +P PG+ GP +G +
Sbjct: 213 PGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPK 272
Query: 108 G 108
G
Sbjct: 273 G 273
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 34.7 bits (78), Expect = 0.29
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 50 DGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPA 98
+G P G G P GPS P G A+SP + PGP GPA
Sbjct: 505 EGRTGPKEGTPGSPSETPGPSPAGPAGDEPAESPSET---PGPRPAGPA 550
Score = 30.8 bits (68), Expect = 4.1
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 48 SPDGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPA 98
SP GPA P P GP P G A+SP + PGP GPA
Sbjct: 525 SPAGPAGDE--PAESPSETPGPRPAGPAGDEPAESPSET---PGPRPAGPA 570
Score = 30.0 bits (66), Expect = 7.1
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 52 PASPTSG-PVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPA 98
PA PT P P GP P G A+SP + PGP GPA
Sbjct: 586 PAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSET---PGPRPAGPA 630
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 34.7 bits (78), Expect = 0.29
Identities = 33/104 (31%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 38 PLSFGFQRLRSPDGPASPTS-----GPVGRPG-----------GVSGP-SWLQPPGTGAA 80
PL+ R R P GPA P GP G PG G +GP L PPG
Sbjct: 184 PLAHPVPRQRRPTGPAGPPGQTGPPGPAGPPGSKGDRGQTGEKGPAGPPGLLGPPGPRGL 243
Query: 81 QSPRKAPRRPGPGMCGPANWGYVLGGRGRGPDEYEKRYSGAFPP 124
P PGP GPA G G P+ + PP
Sbjct: 244 PGEMGRPGPPGPP--GPA------GNPGPSPNSPQGALYSLQPP 279
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 34.3 bits (77), Expect = 0.37
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 40 SFGFQRLRSPDGPASPTSGPVGRPGGVSGPSWLQPPG--TGAAQSPR------KAPRRPG 91
SFG + P P T+ P +PG + P+ ++ PG GA++ PR + P PG
Sbjct: 189 SFGGRPKSQPPLPQE-TAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPG 247
Query: 92 PGMCGPANWGYVLGGRGRG 110
PG A+ G G G
Sbjct: 248 PGALSRASRSRAAGRPGPG 266
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 34.3 bits (77), Expect = 0.37
Identities = 28/67 (41%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 42 GFQRLRSPDGPASPT-----SGPVGRPG----GVSG-PSWLQPPGTGAAQSPRKAPRRPG 91
G Q P GPA P SGP G+PG G+ G P PPG A P P PG
Sbjct: 57 GEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGKP-GVPGLPG 115
Query: 92 -PGMCGP 97
PG GP
Sbjct: 116 KPGERGP 122
Score = 32.7 bits (73), Expect = 1.1
Identities = 36/111 (32%), Positives = 39/111 (35%), Gaps = 20/111 (18%)
Query: 16 GLHGVLWLVFGLGPSMGFYQRFPLSFGFQRLRSPDGPASPTSGPVGRPG--------GVS 67
GL G L GPS P G R P GP GP G PG G+
Sbjct: 89 GLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDV-GPAGLPGPRGPPGPPGIP 147
Query: 68 GPSWLQPPGTGAAQSPRKAPRRPG----------PGMCG-PANWGYVLGGR 107
GP+ + PG Q P AP G PGM G GY GR
Sbjct: 148 GPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGR 198
Score = 32.3 bits (72), Expect = 1.4
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 19/82 (23%)
Query: 58 GPVGRPG-----GVSGPSWLQ-------PPGTGAAQSPRKAPRR---PGP----GMCGPA 98
GP G PG G GP+ L PPG Q P+ P PGP G GPA
Sbjct: 311 GPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPA 370
Query: 99 NWGYVLGGRGRGPDEYEKRYSG 120
+ G RG + + Y G
Sbjct: 371 GYPGAKGERGSPGSDGKPGYPG 392
>gi|38373671 SEC24-related protein C [Homo sapiens]
Length = 1094
Score = 34.3 bits (77), Expect = 0.37
Identities = 33/95 (34%), Positives = 37/95 (38%), Gaps = 17/95 (17%)
Query: 38 PLSFGFQRLRSPDGPASPTS---GP-VGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPG 93
P + G RL S GP P GP V +P VS P PPGT P P P
Sbjct: 215 PPASGGPRLPSMTGPLLPGQSFGGPSVSQPNHVSSPPQALPPGT-----QMTGPLGPLPP 269
Query: 94 MCGPANWGYV-----LGGRGRGPDEYEKRYSGAFP 123
M P GY G RGP + Y G +P
Sbjct: 270 MHSPQQPGYQPQQNGSFGPARGP---QSNYGGPYP 301
>gi|38373669 SEC24-related protein C [Homo sapiens]
Length = 1094
Score = 34.3 bits (77), Expect = 0.37
Identities = 33/95 (34%), Positives = 37/95 (38%), Gaps = 17/95 (17%)
Query: 38 PLSFGFQRLRSPDGPASPTS---GP-VGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPG 93
P + G RL S GP P GP V +P VS P PPGT P P P
Sbjct: 215 PPASGGPRLPSMTGPLLPGQSFGGPSVSQPNHVSSPPQALPPGT-----QMTGPLGPLPP 269
Query: 94 MCGPANWGYV-----LGGRGRGPDEYEKRYSGAFP 123
M P GY G RGP + Y G +P
Sbjct: 270 MHSPQQPGYQPQQNGSFGPARGP---QSNYGGPYP 301
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.140 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,537,105
Number of Sequences: 37866
Number of extensions: 1557457
Number of successful extensions: 6867
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 207
Number of HSP's that attempted gapping in prelim test: 5922
Number of HSP's gapped (non-prelim): 1053
length of query: 657
length of database: 18,247,518
effective HSP length: 109
effective length of query: 548
effective length of database: 14,120,124
effective search space: 7737827952
effective search space used: 7737827952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.