Guide to the Human Genome
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Name: SEC24C Sequence: fasta or formatted (1094aa) NCBI GI: 38373669
Description:

SEC24-related protein C

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt mRNA [1094aa] SEC24-related protein C
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         81           2
 C cysteine            2.5         27           2
 D aspartate           4.4         48           2
 E glutamate           3.7         41           2
 F phenylalanine       4.4         48           2
 G glycine             8.0         87           2
 H histidine           1.3         14           1
 I isoleucine          2.8         31           1
 K lysine              3.4         37           2
 L leucine             9.2        101           2
 M methionine          2.3         25           2
 N asparagine          3.7         41           2
 P proline            10.4        114           3
 Q glutamine           7.0         77           2
 R arginine            4.6         50           2
 S serine              8.4         92           2
 T threonine           5.1         56           2
 V valine              7.6         83           2
 W tryptophan          0.1          1           1
 Y tyrosine            3.7         40           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SEC24-related protein C 
SEC24C                1.000   SEC24-related protein C 
SEC24D                0.515   Sec24-related protein D 
SEC24B                0.182   SEC24 (S. cerevisiae) homolog B isoform a 
SEC24B                0.178   SEC24 (S. cerevisiae) homolog B isoform b 
SEC24A                0.168   SEC24 related gene family, member A 
PRB2                  0.031   proline-rich protein BstNI subfamily 2 
PRB1                  0.025   proline-rich protein BstNI subfamily 1 isoform 1 pre...
NACA                  0.025   nascent polypeptide-associated complex alpha subuni...
WDR33                 0.025   WD repeat domain 33 isoform 1 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
WIPF1                 0.023   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.023   WAS/WASL interacting protein family, member 1 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.022   PREDICTED: hypothetical protein LOC80164 
RERE                  0.022   atrophin-1 like protein isoform b 
RERE                  0.022   atrophin-1 like protein isoform a 
RERE                  0.022   atrophin-1 like protein isoform a 
COL10A1               0.020   type X collagen alpha 1 precursor 
ARID1A                0.020   AT rich interactive domain 1A isoform a 
ARID1A                0.020   AT rich interactive domain 1A isoform b 
MLL5                  0.020   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.020   myeloid/lymphoid or mixed-lineage leukemia 5 
ATN1                  0.020   atrophin-1 
ATN1                  0.020   atrophin-1 
PCLO                  0.020   piccolo isoform 2 
PCLO                  0.020   piccolo isoform 1 
MAPK1IP1L             0.020   MAPK-interacting and spindle-stabilizing protein [Ho...
CPSF6                 0.019   cleavage and polyadenylation specific factor 6, 68 ...
RAPH1                 0.019   Ras association and pleckstrin homology domains 1 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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