Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SNX5 Sequence: fasta or formatted (404aa) NCBI GI: 7657599
Description:

sorting nexin 5

Referenced in:

ER, Golgi, and the Secretory Pathway
Small RNAs in RNA Processing

Other entries for this name:
alt mRNA [404aa] sorting nexin 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         26           2
 C cysteine            1.2          5           2
 D aspartate           6.9         28           2
 E glutamate           9.9         40           2
 F phenylalanine       5.4         22           2
 G glycine             2.2          9           2
 H histidine           2.7         11           1
 I isoleucine          3.7         15           2
 K lysine             10.6         43           2
 L leucine            11.1         45           2
 M methionine          2.0          8           1
 N asparagine          4.0         16           2
 P proline             3.0         12           2
 Q glutamine           4.0         16           3
 R arginine            5.2         21           2
 S serine              6.9         28           2
 T threonine           4.7         19           2
 V valine              6.9         28           2
 W tryptophan          0.2          1           1
 Y tyrosine            2.7         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sorting nexin 5 
SNX5                  1.000   sorting nexin 5 
SNX6                  0.662   sorting nexin 6 isoform b 
SNX32                 0.622   sorting nexin 6B 
SNX6                  0.468   sorting nexin 6 isoform a 
SNX2                  0.106   sorting nexin 2 
SNX1                  0.095   sorting nexin 1 isoform a 
SNX1                  0.092   sorting nexin 1 isoform b 
SNX1                  0.082   sorting nexin 1 isoform c 
SNX30                 0.053   sorting nexin family member 30 
SNX7                  0.043   sorting nexin 7 isoform a 
SNX7                  0.041   sorting nexin 7 isoform b 
SNX12                 0.028   sorting nexin 12 
SNX3                  0.025   sorting nexin 3 isoform a 
GOLGA4                0.019   golgi autoantigen, golgin subfamily a, 4 
DEK                   0.018   DEK oncogene isoform 2 
RB1CC1                0.017   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.017   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
MYH9                  0.016   myosin, heavy polypeptide 9, non-muscle 
MNS1                  0.016   meiosis-specific nuclear structural 1 
SNX33                 0.016   sorting nexin 33 
AMPH                  0.013   amphiphysin isoform 2 
AMPH                  0.013   amphiphysin isoform 1 
SMC4                  0.013   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.013   SMC4 structural maintenance of chromosomes 4-like 1 ...
LOC100131673          0.013   PREDICTED: hypothetical protein 
LOC100131673          0.013   PREDICTED: hypothetical protein 
CCDC147               0.012   coiled-coil domain containing 147 
C14orf145             0.012   hypothetical protein LOC145508 
CCDC150               0.012   coiled-coil domain containing 150 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press