Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131673 Sequence: fasta or formatted (460aa) NCBI GI: 169169660
Description:

PREDICTED: hypothetical protein

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt mRNA [460aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         39           2
 C cysteine            2.4         11           2
 D aspartate           2.4         11           1
 E glutamate           8.5         39           2
 F phenylalanine       2.4         11           1
 G glycine             8.0         37           2
 H histidine           2.2         10           2
 I isoleucine          2.8         13           2
 K lysine              5.7         26           2
 L leucine            11.1         51           2
 M methionine          2.4         11           1
 N asparagine          3.3         15           1
 P proline             6.5         30           3
 Q glutamine           6.5         30           2
 R arginine            6.1         28           2
 S serine              6.3         29           2
 T threonine           5.7         26           2
 V valine              5.7         26           2
 W tryptophan          1.5          7           1
 Y tyrosine            2.2         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131673          1.000   PREDICTED: hypothetical protein 
LOC100287836          0.089   PREDICTED: hypothetical protein XP_002344496 
ANKRD18A              0.087   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.087   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.087   PREDICTED: ankyrin repeat domain 18A 
LOC728897             0.086   PREDICTED: similar to coiled-coil domain containing...
LOC643166             0.086   PREDICTED: similar to hCG1744891 
ANKRD18B              0.085   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.085   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.085   PREDICTED: ankyrin repeat domain 18B 
LOC728897             0.085   PREDICTED: similar to coiled-coil domain containing...
CCDC29                0.084   coiled-coil domain containing 29 
LOC100289454          0.083   PREDICTED: hypothetical protein XP_002342954 
LOC728384             0.083   PREDICTED: similar to coiled-coil domain containing...
LOC100132733          0.083   PREDICTED: similar to FLJ00310 protein 
ANKRD26               0.080   ankyrin repeat domain 26 
CCDC144A              0.054   coiled-coil domain containing 144A 
MNT                   0.019   MAX binding protein 
KIF3A                 0.017   kinesin family member 3A 
KIF20B                0.015   M-phase phosphoprotein 1 
UACA                  0.015   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.015   uveal autoantigen with coiled-coil domains and ankyr...
SLK                   0.015   serine/threonine kinase 2 
KIFC1                 0.015   kinesin family member C1 
CEP120                0.015   coiled-coil domain containing 100 
PRR18                 0.014   proline rich region 18 
MAP4K4                0.014   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.014   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.014   mitogen-activated protein kinase kinase kinase kinas...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press