Guide to the Human Genome
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Name: AMPH Sequence: fasta or formatted (695aa) NCBI GI: 4502081
Description:

amphiphysin isoform 1

Referenced in:

Myc and Related Functions
Synapses
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [653aa] amphiphysin isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         68           2
 C cysteine            0.4          3           1
 D aspartate           5.9         41           1
 E glutamate          11.9         83           3
 F phenylalanine       3.5         24           2
 G glycine             5.5         38           2
 H histidine           1.6         11           2
 I isoleucine          3.0         21           2
 K lysine              6.2         43           2
 L leucine             8.1         56           2
 M methionine          1.4         10           1
 N asparagine          2.4         17           1
 P proline             8.8         61           2
 Q glutamine           5.3         37           2
 R arginine            3.6         25           2
 S serine              6.8         47           2
 T threonine           6.9         48           2
 V valine              6.3         44           2
 W tryptophan          1.0          7           1
 Y tyrosine            1.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amphiphysin isoform 1 
AMPH                  0.926   amphiphysin isoform 2 
BIN1                  0.320   bridging integrator 1 isoform 1 
BIN1                  0.304   bridging integrator 1 isoform 5 
BIN1                  0.300   bridging integrator 1 isoform 6 
BIN1                  0.293   bridging integrator 1 isoform 4 
BIN1                  0.258   bridging integrator 1 isoform 2 
BIN1                  0.253   bridging integrator 1 isoform 7 
BIN1                  0.251   bridging integrator 1 isoform 10 
BIN1                  0.251   bridging integrator 1 isoform 9 
BIN1                  0.244   bridging integrator 1 isoform 8 
BIN1                  0.241   bridging integrator 1 isoform 3 
BIN2                  0.203   bridging integrator 2 
PRG4                  0.034   proteoglycan 4 isoform D 
PRG4                  0.034   proteoglycan 4 isoform C 
PRG4                  0.034   proteoglycan 4 isoform B 
PRG4                  0.034   proteoglycan 4 isoform A 
FSCB                  0.033   fibrous sheath CABYR binding protein 
KIAA0754              0.023   hypothetical protein LOC643314 
TTN                   0.023   titin isoform N2-A 
DPCR1                 0.023   diffuse panbronchiolitis critical region 1 protein ...
DNMBP                 0.022   dynamin binding protein 
RP1L1                 0.022   retinitis pigmentosa 1-like 1 
MUC2                  0.021   mucin 2 precursor 
LOC100294236          0.021   PREDICTED: similar to diffuse panbronchiolitis crit...
TBKBP1                0.020   TBK1 binding protein 1 
BIN3                  0.019   bridging integrator 3 
NACA                  0.019   nascent polypeptide-associated complex alpha subuni...
SCAF1                 0.018   SR-related CTD-associated factor 1 
MLL4                  0.018   myeloid/lymphoid or mixed-lineage leukemia 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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