Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CCDC147 Sequence: fasta or formatted (872aa) NCBI GI: 56961680
Description:

coiled-coil domain containing 147

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         54           2
 C cysteine            0.3          3           1
 D aspartate           4.2         37           2
 E glutamate          14.7        128           3
 F phenylalanine       1.8         16           2
 G glycine             2.2         19           3
 H histidine           2.3         20           2
 I isoleucine          4.9         43           2
 K lysine             12.7        111           3
 L leucine            12.3        107           3
 M methionine          2.6         23           1
 N asparagine          4.0         35           1
 P proline             0.9          8           1
 Q glutamine           9.6         84           3
 R arginine            6.8         59           2
 S serine              4.4         38           2
 T threonine           3.3         29           2
 V valine              4.4         38           2
 W tryptophan          0.2          2           1
 Y tyrosine            2.1         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 147 
CCDC146               0.095   coiled-coil domain containing 146 
MYH9                  0.069   myosin, heavy polypeptide 9, non-muscle 
EEA1                  0.068   early endosome antigen 1, 162kD 
MYH10                 0.068   myosin, heavy polypeptide 10, non-muscle 
PLEC1                 0.066   plectin 1 isoform 11 
PLEC1                 0.066   plectin 1 isoform 10 
PLEC1                 0.066   plectin 1 isoform 8 
PLEC1                 0.066   plectin 1 isoform 7 
PLEC1                 0.066   plectin 1 isoform 6 
PLEC1                 0.066   plectin 1 isoform 3 
PLEC1                 0.066   plectin 1 isoform 2 
PLEC1                 0.066   plectin 1 isoform 1 
MYH13                 0.066   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH2                  0.065   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.065   myosin, heavy chain 2, skeletal muscle, adult [Homo...
CENPE                 0.064   centromere protein E 
MYH1                  0.064   myosin, heavy chain 1, skeletal muscle, adult [Homo...
KTN1                  0.064   kinectin 1 isoform c 
MYH3                  0.064   myosin, heavy chain 3, skeletal muscle, embryonic [H...
KTN1                  0.064   kinectin 1 isoform a 
KTN1                  0.064   kinectin 1 isoform a 
MYH11                 0.064   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.064   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.064   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.064   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
WDR87                 0.063   NYD-SP11 protein 
GOLGA4                0.063   golgi autoantigen, golgin subfamily a, 4 
CCDC88A               0.062   coiled-coil domain containing 88A isoform 1 
KTN1                  0.061   kinectin 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press