Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: AMPH Sequence: fasta or formatted (653aa) NCBI GI: 21536423
Description:

amphiphysin isoform 2

Referenced in:

Myc and Related Functions
Synapses
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [695aa] amphiphysin isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         60           2
 C cysteine            0.5          3           1
 D aspartate           6.0         39           1
 E glutamate          11.3         74           3
 F phenylalanine       3.7         24           2
 G glycine             5.5         36           2
 H histidine           1.7         11           2
 I isoleucine          3.2         21           2
 K lysine              6.4         42           2
 L leucine             8.1         53           2
 M methionine          1.4          9           1
 N asparagine          2.6         17           1
 P proline             8.4         55           2
 Q glutamine           5.5         36           2
 R arginine            3.7         24           2
 S serine              7.0         46           2
 T threonine           6.9         45           2
 V valine              6.1         40           2
 W tryptophan          1.1          7           1
 Y tyrosine            1.7         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amphiphysin isoform 2 
AMPH                  0.984   amphiphysin isoform 1 
BIN1                  0.340   bridging integrator 1 isoform 1 
BIN1                  0.329   bridging integrator 1 isoform 5 
BIN1                  0.319   bridging integrator 1 isoform 6 
BIN1                  0.311   bridging integrator 1 isoform 4 
BIN1                  0.275   bridging integrator 1 isoform 2 
BIN1                  0.269   bridging integrator 1 isoform 7 
BIN1                  0.267   bridging integrator 1 isoform 10 
BIN1                  0.267   bridging integrator 1 isoform 9 
BIN1                  0.259   bridging integrator 1 isoform 8 
BIN1                  0.256   bridging integrator 1 isoform 3 
BIN2                  0.212   bridging integrator 2 
PRG4                  0.034   proteoglycan 4 isoform D 
PRG4                  0.034   proteoglycan 4 isoform C 
PRG4                  0.034   proteoglycan 4 isoform B 
PRG4                  0.034   proteoglycan 4 isoform A 
DNMBP                 0.023   dynamin binding protein 
MUC2                  0.023   mucin 2 precursor 
FSCB                  0.023   fibrous sheath CABYR binding protein 
TBKBP1                0.021   TBK1 binding protein 1 
BIN3                  0.020   bridging integrator 3 
KIAA0754              0.020   hypothetical protein LOC643314 
TTN                   0.020   titin isoform N2-A 
RP1L1                 0.020   retinitis pigmentosa 1-like 1 
NACA                  0.020   nascent polypeptide-associated complex alpha subuni...
SON                   0.019   SON DNA-binding protein isoform F 
SON                   0.019   SON DNA-binding protein isoform B 
SCAF1                 0.019   SR-related CTD-associated factor 1 
SH3D19                0.019   SH3 domain containing 19 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press