Guide to the Human Genome
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Name: SMC4 Sequence: fasta or formatted (1288aa) NCBI GI: 50658063
Description:

SMC4 structural maintenance of chromosomes 4-like 1

Referenced in:

Spindle, M phase, and Meiosis

Other entries for this name:
alt mRNA [1288aa] SMC4 structural maintenance of chromosomes 4-like 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         88           2
 C cysteine            0.9         12           2
 D aspartate           5.3         68           2
 E glutamate          11.6        149           3
 F phenylalanine       2.8         36           1
 G glycine             4.0         51           3
 H histidine           2.2         28           2
 I isoleucine          7.5         96           3
 K lysine             11.5        148           3
 L leucine             8.9        114           2
 M methionine          2.2         28           2
 N asparagine          5.3         68           2
 P proline             3.2         41           6
 Q glutamine           4.9         63           2
 R arginine            4.6         59           3
 S serine              6.1         79           2
 T threonine           4.5         58           3
 V valine              5.3         68           2
 W tryptophan          0.3          4           1
 Y tyrosine            2.3         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SMC4 structural maintenance of chromosomes 4-like 1 ... 
SMC4                  1.000   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC1A                 0.135   structural maintenance of chromosomes 1A 
SMC1B                 0.121   SMC1 structural maintenance of chromosomes 1-like 2 ...
SMC3                  0.085   structural maintenance of chromosomes 3 
SMC2                  0.083   structural maintenance of chromosomes 2 
SMC2                  0.083   structural maintenance of chromosomes 2 
SMC2                  0.083   structural maintenance of chromosomes 2 
CCDC88A               0.037   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.036   coiled-coil domain containing 88A isoform 1 
MYH10                 0.035   myosin, heavy polypeptide 10, non-muscle 
MYH4                  0.034   myosin, heavy polypeptide 4, skeletal muscle 
EEA1                  0.033   early endosome antigen 1, 162kD 
MYH13                 0.033   myosin, heavy polypeptide 13, skeletal muscle [Homo...
CENPF                 0.033   centromere protein F 
MYH3                  0.032   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH9                  0.032   myosin, heavy polypeptide 9, non-muscle 
CENPE                 0.031   centromere protein E 
MYH6                  0.031   myosin heavy chain 6 
MYH1                  0.031   myosin, heavy chain 1, skeletal muscle, adult [Homo...
ERC1                  0.031   RAB6-interacting protein 2 isoform epsilon 
MYH2                  0.031   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.031   myosin, heavy chain 2, skeletal muscle, adult [Homo...
NUMA1                 0.031   nuclear mitotic apparatus protein 1 
GOLGB1                0.031   golgi autoantigen, golgin subfamily b, macrogolgin ...
GOLGA4                0.030   golgi autoantigen, golgin subfamily a, 4 
ERC1                  0.028   RAB6-interacting protein 2 isoform delta 
GCC2                  0.028   GRIP and coiled-coil domain-containing 2 
CCDC18                0.028   sarcoma antigen NY-SAR-41 
KTN1                  0.027   kinectin 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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