Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SNX6 Sequence: fasta or formatted (418aa) NCBI GI: 88703041
Description:

sorting nexin 6 isoform b

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [290aa] sorting nexin 6 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         37           2
 C cysteine            1.4          6           2
 D aspartate           8.6         36           2
 E glutamate           8.6         36           2
 F phenylalanine       5.5         23           2
 G glycine             3.8         16           1
 H histidine           2.4         10           1
 I isoleucine          3.1         13           2
 K lysine              9.6         40           2
 L leucine            11.0         46           2
 M methionine          1.9          8           2
 N asparagine          4.1         17           1
 P proline             2.2          9           2
 Q glutamine           3.8         16           2
 R arginine            6.2         26           2
 S serine              6.9         29           2
 T threonine           3.1         13           1
 V valine              6.0         25           2
 W tryptophan          0.2          1           1
 Y tyrosine            2.6         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sorting nexin 6 isoform b 
SNX6                  0.679   sorting nexin 6 isoform a 
SNX32                 0.662   sorting nexin 6B 
SNX5                  0.639   sorting nexin 5 
SNX5                  0.639   sorting nexin 5 
SNX2                  0.076   sorting nexin 2 
SNX1                  0.074   sorting nexin 1 isoform a 
SNX1                  0.074   sorting nexin 1 isoform b 
SNX1                  0.058   sorting nexin 1 isoform c 
SNX7                  0.035   sorting nexin 7 isoform a 
SNX7                  0.031   sorting nexin 7 isoform b 
SNX30                 0.024   sorting nexin family member 30 
CENPE                 0.024   centromere protein E 
AMPH                  0.021   amphiphysin isoform 2 
AMPH                  0.021   amphiphysin isoform 1 
SNX3                  0.021   sorting nexin 3 isoform a 
SNX12                 0.020   sorting nexin 12 
MIA3                  0.018   melanoma inhibitory activity family, member 3 [Homo...
BIN1                  0.016   bridging integrator 1 isoform 10 
BIN1                  0.016   bridging integrator 1 isoform 9 
BIN1                  0.016   bridging integrator 1 isoform 7 
BIN1                  0.016   bridging integrator 1 isoform 6 
BIN1                  0.016   bridging integrator 1 isoform 5 
BIN1                  0.016   bridging integrator 1 isoform 4 
BIN1                  0.016   bridging integrator 1 isoform 8 
CDC42BPB              0.016   CDC42-binding protein kinase beta 
RAI14                 0.015   retinoic acid induced 14 isoform d 
RAI14                 0.015   retinoic acid induced 14 isoform c 
RAI14                 0.015   retinoic acid induced 14 isoform b 
RAI14                 0.015   retinoic acid induced 14 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press