Guide to the Human Genome
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Name: SNX30 Sequence: fasta or formatted (437aa) NCBI GI: 153791707
Description:

sorting nexin family member 30

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         29           2
 C cysteine            1.4          6           1
 D aspartate           7.8         34           3
 E glutamate           8.9         39           2
 F phenylalanine       3.7         16           1
 G glycine             5.3         23           2
 H histidine           1.6          7           1
 I isoleucine          4.6         20           2
 K lysine              7.1         31           2
 L leucine            11.0         48           2
 M methionine          2.7         12           1
 N asparagine          2.3         10           2
 P proline             5.7         25           2
 Q glutamine           3.2         14           1
 R arginine            6.4         28           3
 S serine              6.6         29           4
 T threonine           5.5         24           2
 V valine              5.3         23           2
 W tryptophan          0.9          4           1
 Y tyrosine            3.4         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sorting nexin family member 30 
SNX7                  0.417   sorting nexin 7 isoform a 
SNX7                  0.345   sorting nexin 7 isoform b 
SNX4                  0.096   sorting nexin 4 
SNX2                  0.088   sorting nexin 2 
SNX1                  0.070   sorting nexin 1 isoform a 
SNX1                  0.066   sorting nexin 1 isoform c 
SNX1                  0.064   sorting nexin 1 isoform b 
SNX18                 0.057   sorting nexin 18 isoform a 
SNX3                  0.055   sorting nexin 3 isoform a 
SNX33                 0.055   sorting nexin 33 
SNX18                 0.054   sorting nexin 18 isoform c 
SNX18                 0.054   sorting nexin 18 isoform b 
SNX12                 0.050   sorting nexin 12 
SNX9                  0.049   sorting nexin 9 
SNX5                  0.048   sorting nexin 5 
SNX5                  0.048   sorting nexin 5 
SNX11                 0.042   sorting nexin 11 
SNX11                 0.042   sorting nexin 11 
SNX8                  0.038   sorting nexin 8 
SNX10                 0.034   sorting nexin 10 
SNX32                 0.033   sorting nexin 6B 
SNX6                  0.022   sorting nexin 6 isoform b 
PXK                   0.019   PX domain containing serine/threonine kinase 
SNX14                 0.018   sorting nexin 14 isoform b 
SNX14                 0.018   sorting nexin 14 isoform a 
RPS6KC1               0.018   ribosomal protein S6 kinase, 52kDa, polypeptide 1 is...
SGK3                  0.018   serum/glucocorticoid regulated kinase 3 isoform 2 [H...
SGK3                  0.018   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
SGK3                  0.018   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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