Guide to the Human Genome
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Name: SNX3 Sequence: fasta or formatted (162aa) NCBI GI: 4507143
Description:

sorting nexin 3 isoform a

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [130aa] sorting nexin 3 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3          7           1
 C cysteine            0.6          1           1
 D aspartate           6.2         10           2
 E glutamate           8.0         13           2
 F phenylalanine       6.2         10           1
 G glycine             5.6          9           1
 H histidine           1.9          3           1
 I isoleucine          6.2         10           2
 K lysine              6.2         10           1
 L leucine             8.6         14           1
 M methionine          1.2          2           1
 N asparagine          4.9          8           1
 P proline             6.8         11           2
 Q glutamine           4.3          7           1
 R arginine            9.3         15           3
 S serine              4.9          8           1
 T threonine           5.6          9           2
 V valine              6.2         10           3
 W tryptophan          0.6          1           1
 Y tyrosine            2.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sorting nexin 3 isoform a 
SNX12                 0.816   sorting nexin 12 
SNX3                  0.741   sorting nexin 3 isoform b 
SNX11                 0.164   sorting nexin 11 
SNX11                 0.164   sorting nexin 11 
SNX7                  0.161   sorting nexin 7 isoform b 
SNX7                  0.161   sorting nexin 7 isoform a 
SNX1                  0.154   sorting nexin 1 isoform c 
SNX1                  0.154   sorting nexin 1 isoform a 
SNX30                 0.154   sorting nexin family member 30 
SNX2                  0.154   sorting nexin 2 
SNX10                 0.141   sorting nexin 10 
SNX1                  0.128   sorting nexin 1 isoform b 
SNX4                  0.092   sorting nexin 4 
SGK3                  0.072   serum/glucocorticoid regulated kinase 3 isoform 2 [H...
SGK3                  0.072   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
SGK3                  0.072   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
SNX18                 0.069   sorting nexin 18 isoform c 
SNX18                 0.069   sorting nexin 18 isoform a 
SNX18                 0.069   sorting nexin 18 isoform b 
PXK                   0.069   PX domain containing serine/threonine kinase 
SNX8                  0.062   sorting nexin 8 
SNX5                  0.062   sorting nexin 5 
SNX5                  0.062   sorting nexin 5 
SNX33                 0.056   sorting nexin 33 
SNX6                  0.056   sorting nexin 6 isoform b 
RPS6KC1               0.049   ribosomal protein S6 kinase, 52kDa, polypeptide 1 is...
SNX9                  0.043   sorting nexin 9 
RPS6KC1               0.039   ribosomal protein S6 kinase, 52kDa, polypeptide 1 i...
SNX16                 0.039   sorting nexin 16 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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