Guide to the Human Genome
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Name: RB1CC1 Sequence: fasta or formatted (1591aa) NCBI GI: 134304846
Description:

Rb1-inducible coiled coil protein 1 isoform 2

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt prot [1594aa] Rb1-inducible coiled coil protein 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         85           2
 C cysteine            2.3         37           2
 D aspartate           5.4         86           1
 E glutamate          11.6        185           3
 F phenylalanine       3.0         48           2
 G glycine             2.1         33           2
 H histidine           2.5         40           1
 I isoleucine          5.2         83           2
 K lysine              8.4        134           3
 L leucine            12.3        195           2
 M methionine          2.5         40           2
 N asparagine          4.2         67           2
 P proline             3.3         53           3
 Q glutamine           6.5        103           3
 R arginine            4.8         77           2
 S serine              8.0        127           3
 T threonine           4.8         77           4
 V valine              5.8         92           2
 W tryptophan          0.4          7           1
 Y tyrosine            1.4         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Rb1-inducible coiled coil protein 1 isoform 2 [Homo... 
RB1CC1                0.998   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
GOLGB1                0.031   golgi autoantigen, golgin subfamily b, macrogolgin ...
AKAP9                 0.030   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.030   A-kinase anchor protein 9 isoform 3 
MYH10                 0.030   myosin, heavy polypeptide 10, non-muscle 
CEP110                0.030   centrosomal protein 110kDa 
GCC2                  0.029   GRIP and coiled-coil domain-containing 2 
CLIP1                 0.029   restin isoform a 
CLIP1                 0.029   restin isoform b 
GOLGA4                0.029   golgi autoantigen, golgin subfamily a, 4 
MYH13                 0.029   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH9                  0.028   myosin, heavy polypeptide 9, non-muscle 
MYH11                 0.028   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.028   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.028   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.028   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
RAD50                 0.027   RAD50 homolog isoform 2 
CEP250                0.027   centrosomal protein 2 
KIF15                 0.026   kinesin family member 15 
CGNL1                 0.026   cingulin-like 1 
ROCK1                 0.026   Rho-associated, coiled-coil containing protein kinase...
MYH7                  0.025   myosin, heavy chain 7, cardiac muscle, beta 
PMFBP1                0.025   polyamine modulated factor 1 binding protein 1 isof...
MYH3                  0.025   myosin, heavy chain 3, skeletal muscle, embryonic [H...
CCDC88A               0.025   coiled-coil domain containing 88A isoform 1 
TRIP11                0.025   thyroid hormone receptor interactor 11 
CENPE                 0.025   centromere protein E 
KTN1                  0.025   kinectin 1 isoform a 
KTN1                  0.025   kinectin 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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