Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: EGFL6 Sequence: fasta or formatted (553aa) NCBI GI: 13124888
Description:

epidermal growth factor-like protein 6 precursor

Referenced in:

Epidermal Growth Factor
Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         32           2
 C cysteine            6.9         38           2
 D aspartate           5.8         32           2
 E glutamate           6.1         34           2
 F phenylalanine       3.4         19           2
 G glycine             9.0         50           2
 H histidine           2.7         15           2
 I isoleucine          4.0         22           2
 K lysine              8.9         49           3
 L leucine             8.3         46           3
 M methionine          1.6          9           1
 N asparagine          5.6         31           2
 P proline             4.9         27           1
 Q glutamine           2.7         15           1
 R arginine            5.1         28           2
 S serine              6.1         34           2
 T threonine           4.3         24           2
 V valine              4.7         26           1
 W tryptophan          1.3          7           1
 Y tyrosine            2.7         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   epidermal growth factor-like protein 6 precursor [Ho... 
NPNT                  0.338   nephronectin 
FBN3                  0.106   fibrillin 3 precursor 
FBN2                  0.103   fibrillin 2 precursor 
MEGF6                 0.101   EGF-like-domain, multiple 3 
FBN1                  0.096   fibrillin 1 precursor 
LTBP4                 0.094   latent transforming growth factor beta binding prot...
LTBP4                 0.094   latent transforming growth factor beta binding prot...
LTBP4                 0.094   latent transforming growth factor beta binding prot...
FBLN2                 0.092   fibulin 2 isoform b precursor 
FBLN2                 0.092   fibulin 2 isoform a precursor 
HMCN1                 0.090   hemicentin 1 
VWCE                  0.089   von Willebrand factor C and EGF domains 
FBLN1                 0.088   fibulin 1 isoform C precursor 
FBLN1                 0.083   fibulin 1 isoform B precursor 
FBLN1                 0.083   fibulin 1 isoform A precursor 
FBLN1                 0.083   fibulin 1 isoform D 
MATN2                 0.081   matrilin 2 isoform b precursor 
MATN2                 0.081   matrilin 2 isoform a precursor 
EFEMP2                0.080   EGF-containing fibulin-like extracellular matrix pr...
LTBP2                 0.078   latent transforming growth factor beta binding protei...
LTBP1                 0.077   latent transforming growth factor beta binding prote...
LTBP1                 0.077   latent transforming growth factor beta binding prote...
FBLN5                 0.077   fibulin 5 precursor 
LTBP3                 0.073   latent transforming growth factor beta binding prot...
LTBP3                 0.073   latent transforming growth factor beta binding prote...
EMR1                  0.073   egf-like module containing, mucin-like, hormone rece...
SCUBE1                0.073   signal peptide, CUB domain, EGF-like 1 
NELL1                 0.073   nel-like 1 isoform 1 precursor 
SCUBE3                0.073   signal peptide, CUB domain, EGF-like 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press