Guide to the Human Genome
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Name: EFEMP2 Sequence: fasta or formatted (443aa) NCBI GI: 190343004
Description:

EGF-containing fibulin-like extracellular matrix protein 2

Referenced in:

Extracellular Matrix

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         23           2
 C cysteine            9.5         42           1
 D aspartate           6.3         28           2
 E glutamate           6.1         27           2
 F phenylalanine       2.7         12           1
 G glycine             6.5         29           2
 H histidine           2.9         13           1
 I isoleucine          3.2         14           1
 K lysine              0.7          3           1
 L leucine             7.7         34           6
 M methionine          1.8          8           1
 N asparagine          4.5         20           2
 P proline             8.1         36           4
 Q glutamine           5.6         25           1
 R arginine            6.1         27           1
 S serine              7.9         35           2
 T threonine           3.4         15           1
 V valine              5.9         26           1
 W tryptophan          0.5          2           1
 Y tyrosine            5.4         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   EGF-containing fibulin-like extracellular matrix pr... 
EFEMP1                0.517   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.517   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.517   EGF-containing fibulin-like extracellular matrix prot...
FBLN5                 0.496   fibulin 5 precursor 
FBLN2                 0.291   fibulin 2 isoform b precursor 
FBLN2                 0.291   fibulin 2 isoform a precursor 
FBLN1                 0.236   fibulin 1 isoform C precursor 
FBLN1                 0.230   fibulin 1 isoform D 
FBLN1                 0.210   fibulin 1 isoform B precursor 
FBLN1                 0.210   fibulin 1 isoform A precursor 
LTBP3                 0.174   latent transforming growth factor beta binding prot...
LTBP3                 0.174   latent transforming growth factor beta binding prote...
FBN2                  0.173   fibrillin 2 precursor 
HMCN2                 0.165   PREDICTED: hemicentin 2 
HMCN2                 0.165   PREDICTED: hemicentin 2 
HMCN2                 0.165   PREDICTED: hemicentin 2 
LTBP4                 0.164   latent transforming growth factor beta binding prot...
LTBP4                 0.164   latent transforming growth factor beta binding prot...
LTBP4                 0.164   latent transforming growth factor beta binding prot...
FBN1                  0.161   fibrillin 1 precursor 
FBN3                  0.155   fibrillin 3 precursor 
HMCN1                 0.152   hemicentin 1 
LTBP2                 0.145   latent transforming growth factor beta binding protei...
MATN2                 0.140   matrilin 2 isoform b precursor 
MATN2                 0.140   matrilin 2 isoform a precursor 
LTBP1                 0.137   latent transforming growth factor beta binding prote...
LTBP1                 0.137   latent transforming growth factor beta binding prote...
MEGF6                 0.129   EGF-like-domain, multiple 3 
SCUBE1                0.127   signal peptide, CUB domain, EGF-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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