Search of human proteins with 74271903

Search of human proteins with 74271903

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]
         (882 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]            1806   0.0  
gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]            1084   0.0  
gi|194473684 chondroitin sulfate N-acetylgalactosaminyltransfera...   206   6e-53
gi|194473683 chondroitin sulfate N-acetylgalactosaminyltransfera...   206   6e-53
gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferas...   194   4e-49
gi|48717495 chondroitin polymerizing factor 2 [Homo sapiens]          172   1e-42
gi|27545323 chondroitin polymerizing factor [Homo sapiens]            159   1e-38
gi|9910144 core 1 synthase, glycoprotein-N-acetylgalactosamine 3...    73   1e-12
gi|239757870 PREDICTED: novel protein similar to chondroitin sul...    69   2e-11
gi|239752388 PREDICTED: novel protein similar to chondroitin sul...    69   2e-11
gi|239746905 PREDICTED: novel protein similar to chondroitin sul...    69   2e-11
gi|71043500 beta 1,4-N-acetylgalactosaminyltransferase-transfera...    67   1e-10
gi|154689817 beta 1,3-galactosyltransferase-like [Homo sapiens]        63   1e-09
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera...    61   4e-09
gi|19924099 synapsin I isoform Ia [Homo sapiens]                       58   4e-08
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       58   4e-08
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H...    52   2e-06
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]            52   3e-06
gi|74271816 radical fringe [Homo sapiens]                              50   1e-05
gi|11386161 alpha 2 type IX collagen [Homo sapiens]                    50   1e-05
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho...    50   1e-05
gi|58532584 C1GALT1-specific chaperone 1 [Homo sapiens]                49   2e-05
gi|23097329 C1GALT1-specific chaperone 1 [Homo sapiens]                49   2e-05
gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s...    49   3e-05
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre...    48   5e-05
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s...    47   8e-05
gi|32307177 forkhead box G1 [Homo sapiens]                             47   8e-05
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]               47   8e-05
gi|156071470 hyperpolarization activated cyclic nucleotide-gated...    47   1e-04
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s...    47   1e-04

>gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]
          Length = 882

 Score = 1806 bits (4679), Expect = 0.0
 Identities = 882/882 (100%), Positives = 882/882 (100%)

Query: 1   MAVRSRRPWMSVALGLVLGFTAASWLIAPRVAELSERKRRGSSLCSYYGRSAAGPRAGAQ 60
           MAVRSRRPWMSVALGLVLGFTAASWLIAPRVAELSERKRRGSSLCSYYGRSAAGPRAGAQ
Sbjct: 1   MAVRSRRPWMSVALGLVLGFTAASWLIAPRVAELSERKRRGSSLCSYYGRSAAGPRAGAQ 60

Query: 61  QPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQRRRGREPEG 120
           QPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQRRRGREPEG
Sbjct: 61  QPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQRRRGREPEG 120

Query: 121 ATGLPGAPAAEGEPEEEDGGAAGQRRDGRPGSSHNGSGDGGAAAPSARPRDFLYVGVMTA 180
           ATGLPGAPAAEGEPEEEDGGAAGQRRDGRPGSSHNGSGDGGAAAPSARPRDFLYVGVMTA
Sbjct: 121 ATGLPGAPAAEGEPEEEDGGAAGQRRDGRPGSSHNGSGDGGAAAPSARPRDFLYVGVMTA 180

Query: 181 QKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGVDDSYPPQKKSF 240
           QKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGVDDSYPPQKKSF
Sbjct: 181 QKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGVDDSYPPQKKSF 240

Query: 241 MMIKYMHDHYLDKYEWFMRADDDVYIKGDKLEEFLRSLNSSKPLYLGQTGLGNIEELGKL 300
           MMIKYMHDHYLDKYEWFMRADDDVYIKGDKLEEFLRSLNSSKPLYLGQTGLGNIEELGKL
Sbjct: 241 MMIKYMHDHYLDKYEWFMRADDDVYIKGDKLEEFLRSLNSSKPLYLGQTGLGNIEELGKL 300

Query: 301 GLEPGENFCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVGRCVRRFGGTQCVWS 360
           GLEPGENFCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVGRCVRRFGGTQCVWS
Sbjct: 301 GLEPGENFCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVGRCVRRFGGTQCVWS 360

Query: 361 YEMQQLFHENYEHNRKGYIQDLHNSKIHAAITLHPNKRPAYQYRLHNYMLSRKISELRYR 420
           YEMQQLFHENYEHNRKGYIQDLHNSKIHAAITLHPNKRPAYQYRLHNYMLSRKISELRYR
Sbjct: 361 YEMQQLFHENYEHNRKGYIQDLHNSKIHAAITLHPNKRPAYQYRLHNYMLSRKISELRYR 420

Query: 421 TIQLHRESALMSKLSNTEVSKEDQQLGVIPSFNHFQPRERNEVIEWEFLTGKLLYSAAEN 480
           TIQLHRESALMSKLSNTEVSKEDQQLGVIPSFNHFQPRERNEVIEWEFLTGKLLYSAAEN
Sbjct: 421 TIQLHRESALMSKLSNTEVSKEDQQLGVIPSFNHFQPRERNEVIEWEFLTGKLLYSAAEN 480

Query: 481 QPPRQSLSSILRTALDDTVLQVMEMINENAKSRGRLIDFKEIQYGYRRVNPMHGVEYILD 540
           QPPRQSLSSILRTALDDTVLQVMEMINENAKSRGRLIDFKEIQYGYRRVNPMHGVEYILD
Sbjct: 481 QPPRQSLSSILRTALDDTVLQVMEMINENAKSRGRLIDFKEIQYGYRRVNPMHGVEYILD 540

Query: 541 LLLLYKRHKGRKLTVPVRRHAYLQQLFSKPFFRETEELDVNSLVESINSETQSFSFISNS 600
           LLLLYKRHKGRKLTVPVRRHAYLQQLFSKPFFRETEELDVNSLVESINSETQSFSFISNS
Sbjct: 541 LLLLYKRHKGRKLTVPVRRHAYLQQLFSKPFFRETEELDVNSLVESINSETQSFSFISNS 600

Query: 601 LKILSSFQGAKEMGGHNEKKVHILVPLIGRYDIFLRFMENFENMCLIPKQNVKLVIILFS 660
           LKILSSFQGAKEMGGHNEKKVHILVPLIGRYDIFLRFMENFENMCLIPKQNVKLVIILFS
Sbjct: 601 LKILSSFQGAKEMGGHNEKKVHILVPLIGRYDIFLRFMENFENMCLIPKQNVKLVIILFS 660

Query: 661 RDSGQDSSKHIELIKGYQNKYPKAEMTLIPMKGEFSRGLGLEMASAQFDNDTLLLFCDVD 720
           RDSGQDSSKHIELIKGYQNKYPKAEMTLIPMKGEFSRGLGLEMASAQFDNDTLLLFCDVD
Sbjct: 661 RDSGQDSSKHIELIKGYQNKYPKAEMTLIPMKGEFSRGLGLEMASAQFDNDTLLLFCDVD 720

Query: 721 LIFREDFLQRCRDNTIQGQQVYYPIIFSQYDPKVTNGGNPPTDDYFIFSKKTGFWRDYGY 780
           LIFREDFLQRCRDNTIQGQQVYYPIIFSQYDPKVTNGGNPPTDDYFIFSKKTGFWRDYGY
Sbjct: 721 LIFREDFLQRCRDNTIQGQQVYYPIIFSQYDPKVTNGGNPPTDDYFIFSKKTGFWRDYGY 780

Query: 781 GITCIYKSDLLGAGGFDTSIQGWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDP 840
           GITCIYKSDLLGAGGFDTSIQGWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDP
Sbjct: 781 GITCIYKSDLLGAGGFDTSIQGWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDP 840

Query: 841 NLDPKQYKMCLGSKASTFASTMQLAELWLEKHLGVRYNRTLS 882
           NLDPKQYKMCLGSKASTFASTMQLAELWLEKHLGVRYNRTLS
Sbjct: 841 NLDPKQYKMCLGSKASTFASTMQLAELWLEKHLGVRYNRTLS 882


>gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]
          Length = 802

 Score = 1084 bits (2803), Expect = 0.0
 Identities = 527/766 (68%), Positives = 616/766 (80%), Gaps = 26/766 (3%)

Query: 113 RRGREPEGATGLPGAPAAEGEPEEEDGGAAGQRRDGR---PGSSHNGSGDGGAAAPSARP 169
           RR   PEG     G  AA      + GGA G  R  +   PGS  +G           R 
Sbjct: 40  RRRASPEGCRS--GQAAAS-----QAGGARGDARGAQLWPPGSDPDGG---------PRD 83

Query: 170 RDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGV 229
           R+FL+VGVMTAQKYL +RA+AA RTW++ IPG+V+FFSS+          P+PV+ L GV
Sbjct: 84  RNFLFVGVMTAQKYLQTRAVAAYRTWSKTIPGKVQFFSSE----GSDTSVPIPVVPLRGV 139

Query: 230 DDSYPPQKKSFMMIKYMHDHYLDKYEWFMRADDDVYIKGDKLEEFLRSLNSSKPLYLGQT 289
           DDSYPPQKKSFMM+KYMHDHYLDKYEWFMRADDDVYIKGD+LE FLRSLNSS+PL+LGQT
Sbjct: 140 DDSYPPQKKSFMMLKYMHDHYLDKYEWFMRADDDVYIKGDRLENFLRSLNSSEPLFLGQT 199

Query: 290 GLGNIEELGKLGLEPGENFCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVGRCV 349
           GLG  EE+GKL LEPGENFCMGGPG+I SREVLRRMVPHIG+CLREMYTTHEDVEVGRCV
Sbjct: 200 GLGTTEEMGKLALEPGENFCMGGPGVIMSREVLRRMVPHIGKCLREMYTTHEDVEVGRCV 259

Query: 350 RRFGGTQCVWSYEMQQLFHENYEHNRKGYIQDLHNSKIHAAITLHPNKRPAYQYRLHNYM 409
           RRF G QCVWSYEMQQLF+ENYE N+KGYI+DLHNSKIH AITLHPNK P YQYRLH+YM
Sbjct: 260 RRFAGVQCVWSYEMQQLFYENYEQNKKGYIRDLHNSKIHQAITLHPNKNPPYQYRLHSYM 319

Query: 410 LSRKISELRYRTIQLHRESALMSKLSNTEVSKEDQQLGVIPSFNHFQPRERNEVIEWEFL 469
           LSRKISELR+RTIQLHRE  LMSK SNTE+ KED QLG+ PSF  FQPR+R E++EWEFL
Sbjct: 320 LSRKISELRHRTIQLHREIVLMSKYSNTEIHKEDLQLGIPPSFMRFQPRQREEILEWEFL 379

Query: 470 TGKLLYSAAENQPPRQSLSSILRTALDDTVLQVMEMINENAKSRGRLIDFKEIQYGYRRV 529
           TGK LYSA + QPPR+ + S  R ALDD V+QVMEMIN NAK+RGR+IDFKEIQYGYRRV
Sbjct: 380 TGKYLYSAVDGQPPRRGMDSAQREALDDIVMQVMEMINANAKTRGRIIDFKEIQYGYRRV 439

Query: 530 NPMHGVEYILDLLLLYKRHKGRKLTVPVRRHAYLQQLFSKPFFRETEELDVNSLVESINS 589
           NPM+G EYILDLLLLYK+HKG+K+TVPVRRHAYLQQ FSK  F E EELD   L + IN 
Sbjct: 440 NPMYGAEYILDLLLLYKKHKGKKMTVPVRRHAYLQQTFSKIQFVEHEELDAQELAKRINQ 499

Query: 590 ETQSFSFISNSLKILSSFQGAKEMGGHNE---KKVHILVPLIGRYDIFLRFMENFENMCL 646
           E+ S SF+SNSLK L  FQ       H E   KK++IL+PL GR+D+F+RFM NFE  CL
Sbjct: 500 ESGSLSFLSNSLKKLVPFQLPGSKSEHKEPKDKKINILIPLSGRFDMFVRFMGNFEKTCL 559

Query: 647 IPKQNVKLVIILFSRDSGQDSSKHIELIKGYQNKYPKAEMTLIPMKGEFSRGLGLEMASA 706
           IP QNVKLV++LF+ DS  D +K +EL++ Y+ KYPKA+M ++P+ GEFSR L LE+ S+
Sbjct: 560 IPNQNVKLVVLLFNSDSNPDKAKQVELMRDYRIKYPKADMQILPVSGEFSRALALEVGSS 619

Query: 707 QFDNDTLLLFCDVDLIFREDFLQRCRDNTIQGQQVYYPIIFSQYDPKVTNGGNPPTDDYF 766
           QF+N++LL FCDVDL+F  +FLQRCR NT+ GQQ+Y+PIIFSQYDPK+   G  P+D++F
Sbjct: 620 QFNNESLLFFCDVDLVFTTEFLQRCRANTVLGQQIYFPIIFSQYDPKIVYSGKVPSDNHF 679

Query: 767 IFSKKTGFWRDYGYGITCIYKSDLLGAGGFDTSIQGWGLEDVDLYNKVILSGLRPFRSQE 826
            F++KTGFWR+YG+GITCIYK DL+  GGFD SIQGWGLEDVDL+NKV+ +GL+ FRSQE
Sbjct: 680 AFTQKTGFWRNYGFGITCIYKGDLVRVGGFDVSIQGWGLEDVDLFNKVVQAGLKTFRSQE 739

Query: 827 VGVVHIFHPVHCDPNLDPKQYKMCLGSKASTFASTMQLAELWLEKH 872
           VGVVH+ HPV CDPNLDPKQYKMCLGSKAST+ ST QLAE+WLEK+
Sbjct: 740 VGVVHVHHPVFCDPNLDPKQYKMCLGSKASTYGSTQQLAEMWLEKN 785



 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 1  MAVRSRRPWMSVALGLVLGFTAASWLIAPRVAELSER--KRRGSSLCSYYGRSAAGPRAG 58
          MA R RR W+SV LGLVLGF  AS L+ PR +EL     +RR S      G++AA    G
Sbjct: 1  MAARGRRAWLSVLLGLVLGFVLASRLVLPRASELKRAGPRRRASPEGCRSGQAAASQAGG 60

Query: 59 AQ 60
          A+
Sbjct: 61 AR 62


>gi|194473684 chondroitin sulfate N-acetylgalactosaminyltransferase
           1 [Homo sapiens]
          Length = 532

 Score =  206 bits (525), Expect = 6e-53
 Identities = 111/274 (40%), Positives = 159/274 (58%), Gaps = 19/274 (6%)

Query: 621 VHILVPLIGRYDIFLRFMENFENMCLIPKQNVKLVIILFSRDSGQDSSKHIELIKGYQNK 680
           ++++VPL  R D F +FM+NF  MC+     V L ++ F ++        I  +KG    
Sbjct: 263 INVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVYFGKEE-------INEVKGILEN 315

Query: 681 YPKA----EMTLIPMKGEFSRGLGLEMASAQFD-NDTLLLFCDVDLIFREDFLQRCRDNT 735
             KA      T I + GEFSRG GL++ +  +  ++ LL FCDVD+ F  +FL  CR NT
Sbjct: 316 TSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVDIYFTSEFLNTCRLNT 375

Query: 736 IQGQQVYYPIIFSQYDPKVTNGGN---PPTDDYFIFSKKTGFWRDYGYGITCIYKSDLLG 792
             G++V+YP++FSQY+P +  G +   PP +   +  K+TGFWRD+G+G+TC Y+SD + 
Sbjct: 376 QPGKKVFYPVLFSQYNPGIIYGHHDAVPPLEQQLVIKKETGFWRDFGFGMTCQYRSDFIN 435

Query: 793 AGGFDTSIQGWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDPNLDPKQYKMCLG 852
            GGFD  I+GWG EDV LY K + S L   R+   G+ H++H   C   L P+QYKMC+ 
Sbjct: 436 IGGFDLDIKGWGGEDVHLYRKYLHSNLIVVRTPVRGLFHLWHEKRCMDELTPEQYKMCMQ 495

Query: 853 SKASTFASTMQLAEL----WLEKHLGVRYNRTLS 882
           SKA   AS  QL  L     +E HL  +  +T S
Sbjct: 496 SKAMNEASHGQLGMLVFRHEIEAHLRKQKQKTSS 529


>gi|194473683 chondroitin sulfate N-acetylgalactosaminyltransferase
           1 [Homo sapiens]
          Length = 532

 Score =  206 bits (525), Expect = 6e-53
 Identities = 111/274 (40%), Positives = 159/274 (58%), Gaps = 19/274 (6%)

Query: 621 VHILVPLIGRYDIFLRFMENFENMCLIPKQNVKLVIILFSRDSGQDSSKHIELIKGYQNK 680
           ++++VPL  R D F +FM+NF  MC+     V L ++ F ++        I  +KG    
Sbjct: 263 INVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVYFGKEE-------INEVKGILEN 315

Query: 681 YPKA----EMTLIPMKGEFSRGLGLEMASAQFD-NDTLLLFCDVDLIFREDFLQRCRDNT 735
             KA      T I + GEFSRG GL++ +  +  ++ LL FCDVD+ F  +FL  CR NT
Sbjct: 316 TSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVDIYFTSEFLNTCRLNT 375

Query: 736 IQGQQVYYPIIFSQYDPKVTNGGN---PPTDDYFIFSKKTGFWRDYGYGITCIYKSDLLG 792
             G++V+YP++FSQY+P +  G +   PP +   +  K+TGFWRD+G+G+TC Y+SD + 
Sbjct: 376 QPGKKVFYPVLFSQYNPGIIYGHHDAVPPLEQQLVIKKETGFWRDFGFGMTCQYRSDFIN 435

Query: 793 AGGFDTSIQGWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDPNLDPKQYKMCLG 852
            GGFD  I+GWG EDV LY K + S L   R+   G+ H++H   C   L P+QYKMC+ 
Sbjct: 436 IGGFDLDIKGWGGEDVHLYRKYLHSNLIVVRTPVRGLFHLWHEKRCMDELTPEQYKMCMQ 495

Query: 853 SKASTFASTMQLAEL----WLEKHLGVRYNRTLS 882
           SKA   AS  QL  L     +E HL  +  +T S
Sbjct: 496 SKAMNEASHGQLGMLVFRHEIEAHLRKQKQKTSS 529


>gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferase 2
           [Homo sapiens]
          Length = 542

 Score =  194 bits (492), Expect = 4e-49
 Identities = 98/270 (36%), Positives = 153/270 (56%), Gaps = 11/270 (4%)

Query: 621 VHILVPLIGRYDIFLRFMENFENMCLIPKQNVKLVIILFSRDSGQDSSKHIELIKGYQNK 680
           ++I+VPL  R + F++FM+NF ++C+   + + L ++ F ++        +E +    N 
Sbjct: 272 INIIVPLAERTEAFVQFMQNFRDVCIHQDKKIHLTVVYFGKEGLSKVKSILESVTSESNF 331

Query: 681 YPKAEMTLIPMKGEFSRGLGLEMASAQFDN-DTLLLFCDVDLIFREDFLQRCRDNTIQGQ 739
           +     TL+ +  EF+RG GL + +  +D  + L+ FCDVD+ F  +FL  CR N   G+
Sbjct: 332 H---NYTLVSLNEEFNRGRGLNVGARAWDKGEVLMFFCDVDIYFSAEFLNSCRLNAEPGK 388

Query: 740 QVYYPIIFSQYDPKVTNGGN---PPTDDYFIFSKKTGFWRDYGYGITCIYKSDLLGAGGF 796
           +V+YP++FS Y+P +        PP +   +  K +GFWRD+G+G+TC Y+SD L  GGF
Sbjct: 389 KVFYPVVFSLYNPAIVYANQEVPPPVEQQLVHKKDSGFWRDFGFGMTCQYRSDFLTIGGF 448

Query: 797 DTSIQGWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDPNLDPKQYKMCLGSKAS 856
           D  ++GWG EDV LY K +   L   R+   G+ H++H   C   L P+QY+MC+ SKA 
Sbjct: 449 DMEVKGWGGEDVHLYRKYLHGDLIVIRTPVPGLFHLWHEKRCADELTPEQYRMCIQSKAM 508

Query: 857 TFASTMQLAEL----WLEKHLGVRYNRTLS 882
             AS   L  L     +E HL  +  RT S
Sbjct: 509 NEASHSHLGMLVFREEIETHLHKQAYRTNS 538


>gi|48717495 chondroitin polymerizing factor 2 [Homo sapiens]
          Length = 772

 Score =  172 bits (436), Expect = 1e-42
 Identities = 178/743 (23%), Positives = 313/743 (42%), Gaps = 116/743 (15%)

Query: 170 RDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGV 229
           R+ L V V+T++  L + A+A  RT A   P R+ +F+ Q+   A   P  + V+     
Sbjct: 99  RERLLVAVLTSRATLSTLAVAVNRTVAHHFP-RLLYFTGQRGARA---PAGMQVV----- 149

Query: 230 DDSYPPQKKSFMM---IKYMHDHYLDKYEWFMRADDDVYIKGDKLEEFLRSLNSSKPLYL 286
             S+  ++ +++M   ++++H H+   Y+WF    DD Y++  +L      L+ ++ LYL
Sbjct: 150 --SHGDERPAWLMSETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYL 207

Query: 287 GQTGLGNIEELGKLGLEPGENFCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVG 346
           G+      EE   +G      +C GG G + SR +L R+ PH+  C  ++ +   D  +G
Sbjct: 208 GRA-----EEF--IGAGEQARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLG 260

Query: 347 RCVRRFGGTQCVWSYEMQQLFHENYEHNRKGYIQDLHNSKIHAAITLHPNKRPAYQYRLH 406
           RC+    G  CV  ++ QQ  + ++E  +    +   +S   +A  +HP       YRLH
Sbjct: 261 RCLIDSLGVGCVSQHQGQQ--YRSFELAKNRDPEKEGSSAFLSAFAVHPVSEGTLMYRLH 318

Query: 407 NYMLSRKISELRYRTIQLHRE----SALMSKLSNTEVSKEDQQLGV-----IPSFNHFQP 457
                      R+  ++L R       L +++ N  V   + + G+     +P+   F P
Sbjct: 319 K----------RFSALELERAYSEIEQLQAQIRNLTVLTPEGEAGLSWPVGLPA--PFTP 366

Query: 458 RERNEVIEWEFLTGKLLYSAAENQPPRQSLSSILRTALDDTVLQVMEMINENAKSRGRLI 517
             R EV+ W++ T +  +S A+   P+  L    R  + D +   +E +N   + R R  
Sbjct: 367 HSRFEVLGWDYFTEQHTFSCADG-APKCPLQGASRADVGDALETALEQLNRRYQPRLR-F 424

Query: 518 DFKEIQYGYRRVNPMHGVEYILDLLLLYKRHKGRKLTVPVRRHAYLQQLFSKPFFRETEE 577
             + +  GYRR +P  G+EY LDLLL     +G +  +  RR + L+ L         E 
Sbjct: 425 QKQRLLNGYRRFDPARGMEYTLDLLLECVTQRGHRRAL-ARRVSLLRPL------SRVEI 477

Query: 578 LDVNSLVESINSETQSFSFISNSLKILSSFQGAKEMGGHNEKKVHILVP-LIGRYDIFLR 636
           L +  + E+                                 +V +++P L+        
Sbjct: 478 LPMPYVTEA--------------------------------TRVQLVLPLLVAEAAAAPA 505

Query: 637 FMENFENMCLIPKQNVKLVIILF--SRDSGQDSSKHIELIKG----YQNKYPKAEMTLIP 690
           F+E F    L P+++  L ++L    R+ G+ +      +K      + +YP   +  + 
Sbjct: 506 FLEAFAANVLEPREHALLTLLLVYGPREGGRGAPDPFLGVKAAAAELERRYPGTRLAWLA 565

Query: 691 MKGEFSRGLGL-EMASAQFDNDTLLLFCDVDLIFREDFLQRCRDNTIQGQQVYYPIIFSQ 749
           ++ E    + L ++ S +   DTL     V      + L RCR N I G Q ++P+ F +
Sbjct: 566 VRAEAPSQVRLMDVVSKKHPVDTLFFLTTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQE 625

Query: 750 YDPKVT-------------NGGNPPTDDYFIFSKKTGFWRDYGYGITCIYKSDLLGA--- 793
           ++P ++             +  +PP  D    +   G +        C Y +D L A   
Sbjct: 626 FNPALSPQRSPPGPPGAGPDPPSPPGADPSRGAPIGGRFDRQASAEGCFYNADYLAARAR 685

Query: 794 -----GGFDTSIQGWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDPNLDPKQYK 848
                 G +      GLE +D++ +   SGL  FR+ E G+V  F    C P L  + Y 
Sbjct: 686 LAGELAGQEEEEALEGLEVMDVFLR--FSGLHLFRAVEPGLVQKFSLRDCSPRLSEELYH 743

Query: 849 MCLGSKASTFASTMQLAELWLEK 871
            C  S         QLA    E+
Sbjct: 744 RCRLSNLEGLGGRAQLAMALFEQ 766


>gi|27545323 chondroitin polymerizing factor [Homo sapiens]
          Length = 775

 Score =  159 bits (401), Expect = 1e-38
 Identities = 202/831 (24%), Positives = 321/831 (38%), Gaps = 113/831 (13%)

Query: 85  GPPLPEAAPGIT-SFRSSPWQQPP----PLQQRRRGREPEGATGLPGAPAA--EGEPEEE 137
           GP     + G T S  S  W + P    P Q       P G T     P +   G   E+
Sbjct: 14  GPVAVGISLGFTLSLLSVTWVEEPCGPGPPQPGDSELPPRGNTNAARRPNSVQPGAEREK 73

Query: 138 DGGAAGQRRDGRPGS-SHNGSGDGGAAAPSARPRDF---------LYVGVMTAQKYLGSR 187
            G   G   +  P    ++ +  G AA  + R R           L V V+T+Q  L + 
Sbjct: 74  PGAGEGAGENWEPRVLPYHPAQPGQAAKKAVRTRYISTELGIRQRLLVAVLTSQTTLPTL 133

Query: 188 ALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGVDDSYPPQKKSFMMIKYMH 247
            +A  RT    +  RV F +  +   A   PP + V+ L        P     + ++++ 
Sbjct: 134 GVAVNRTLGHRLE-RVVFLTGARGRRA---PPGMAVVTL----GEERPIGHLHLALRHLL 185

Query: 248 DHYLDKYEWFMRADDDVYIKGDKLEEFLR--SLNSSKPLYLGQTGLGNIEELGKLGLEPG 305
           + + D ++WF    D  Y +   L       SL S+  LYLG+           +G EP 
Sbjct: 186 EQHGDDFDWFFLVPDTTYTEAHGLARLTGHLSLASAAHLYLGRPQ-------DFIGGEPT 238

Query: 306 EN-FCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVGRCVRRFGGTQCVWSYEMQ 364
              +C GG G++ SR +L+++ PH+  C  ++ +   D  +GRC+    G  C   +E  
Sbjct: 239 PGRYCHGGFGVLLSRMLLQQLRPHLEGCRNDIVSARPDEWLGRCILDATGVGCTGDHEGV 298

Query: 365 QLFHENYEHNRKGYIQDLHNSKIHAAITLHPNKRPAYQYRLHNYMLSRKISELRYRTIQL 424
              H            D H     +A+T HP + P + Y+LH    +R   E  Y+ IQ 
Sbjct: 299 HYSHLELSPGEPVQEGDPH---FRSALTAHPVRDPVHMYQLHK-AFARAELERTYQEIQ- 353

Query: 425 HRESALMSKLSNTEVSKEDQQLGV-----IPSFNHFQPRERNEVIEWEFLTGKLLYSAAE 479
                L  ++ NT     D          IP+ +  +P  R EV+ W++ T +  +S A+
Sbjct: 354 ----ELQWEIQNTSHLAVDGDRAAAWPVGIPAPS--RPASRFEVLRWDYFTEQHAFSCAD 407

Query: 480 NQPPRQSLSSILRTALDDTVLQVMEMINENAKSRGRLIDFKEIQYGYRRVNPMHGVEYIL 539
              PR  L    R  + D +   +E +N       RL   +++  GYRR +P  G+EY L
Sbjct: 408 GS-PRCPLRGADRADVADVLGTALEELNRRYHPALRL-QKQQLVNGYRRFDPARGMEYTL 465

Query: 540 DLLLLYKRHKGRKLTVPVRRHAYLQQLFSKPFFRETEELDVNSLVESINSETQSFSFISN 599
           DL L     +G +   P+ R   L +  S+      E L V  + E+             
Sbjct: 466 DLQLEALTPQGGRR--PLTRRVQLLRPLSR-----VEILPVPYVTEA------------- 505

Query: 600 SLKILSSFQGAKEMGGHNEKKVHILVPL-IGRYDIFLRFMENFENMCLIP-KQNVKLVII 657
                               ++ +L+PL     D+   F+E F    L P      L ++
Sbjct: 506 -------------------SRLTVLLPLAAAERDLAPGFLEAFATAALEPGDAAAALTLL 546

Query: 658 LFSRDSGQDSSKHIEL-------IKGYQNKYPKAEMTLIPMKGEFSRGLGL-EMASAQFD 709
           L           H ++       +   + ++P A +  + ++      L L ++ S +  
Sbjct: 547 LLYEPRQAQRVAHADVFAPVKAHVAELERRFPGARVPWLSVQTAAPSPLRLMDLLSKKHP 606

Query: 710 NDTLLLFCDVDLIFREDFLQRCRDNTIQGQQVYYPIIFSQYDPKVT--NGGNPPTDDYFI 767
            DTL L    D +   DFL RCR + I G Q ++P+ F  + P V    G  PP      
Sbjct: 607 LDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAFHPAVAPPQGPGPPE----- 661

Query: 768 FSKKTGFWRDYGYGITCIYKSDLLGAGG---FDTSIQGWGLEDVDLYNKVI-LSGLRPFR 823
             + TG +        C Y SD + A G     +  +   LE +D+Y   +  S L   R
Sbjct: 662 LGRDTGRFDRQAASEACFYNSDYVAARGRLAAASEQEEELLESLDVYELFLHFSSLHVLR 721

Query: 824 SQEVGVVHIFHPVHCDPNLDPKQYKMCLGSKASTFASTMQLAELWLEKHLG 874
           + E  ++  +    C   L    Y  CL S      S  QLA L  E+  G
Sbjct: 722 AVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQLAMLLFEQEQG 772


>gi|9910144 core 1 synthase, glycoprotein-N-acetylgalactosamine
           3-beta-galactosyltransferase, 1 [Homo sapiens]
          Length = 363

 Score = 73.2 bits (178), Expect = 1e-12
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 18/173 (10%)

Query: 177 VMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGVDDSYPPQ 236
           VMT  + L  +A   + TWA+    +V F SS++  +     P + +    G D  Y   
Sbjct: 93  VMTGPQNLEKKAKHVKATWAQRC-NKVLFMSSEENKDF----PAVGLKTKEGRDQLYWKT 147

Query: 237 KKSFMMIKYMHDHYLDKYEWFMRADDDVYIKGDKLEEFLRSLNSSKPLYLGQTGLGNIEE 296
            K+F   +Y+H+HYL+  +WF++ADDD Y+  D L   L   +  +P+Y G+     ++ 
Sbjct: 148 IKAF---QYVHEHYLEDADWFLKADDDTYVILDNLRWLLSKYDPEEPIYFGRRFKPYVK- 203

Query: 297 LGKLGLEPGENFCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVGRCV 349
                    + +  GG G + S+E L+R V           ++ ED+ +GRC+
Sbjct: 204 ---------QGYMSGGAGYVLSKEALKRFVDAFKTDKCTHSSSIEDLALGRCM 247


>gi|239757870 PREDICTED: novel protein similar to chondroitin
           sulfate GalNAcT-2 (GALNACT-2) [Homo sapiens]
          Length = 142

 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 795 GFDTSIQGWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDPNLDPKQYKMCLGSK 854
           GFD  ++GWG EDV LY K +   L   R+   G+ H++H  HC   L P+QY+MC+ SK
Sbjct: 47  GFDMEVKGWGGEDVHLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSK 106

Query: 855 ASTFASTMQLAEL----WLEKHLGVRYNRTLS 882
           A   AS   L  L     +E HL  +  RT S
Sbjct: 107 AMDEASRSHLGMLVFREEIETHLHKQAYRTNS 138


>gi|239752388 PREDICTED: novel protein similar to chondroitin
           sulfate GalNAcT-2 (GALNACT-2) [Homo sapiens]
          Length = 142

 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 795 GFDTSIQGWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDPNLDPKQYKMCLGSK 854
           GFD  ++GWG EDV LY K +   L   R+   G+ H++H  HC   L P+QY+MC+ SK
Sbjct: 47  GFDMEVKGWGGEDVHLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSK 106

Query: 855 ASTFASTMQLAEL----WLEKHLGVRYNRTLS 882
           A   AS   L  L     +E HL  +  RT S
Sbjct: 107 AMDEASRSHLGMLVFREEIETHLHKQAYRTNS 138


>gi|239746905 PREDICTED: novel protein similar to chondroitin
           sulfate GalNAcT-2 (GALNACT-2) [Homo sapiens]
          Length = 142

 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 795 GFDTSIQGWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDPNLDPKQYKMCLGSK 854
           GFD  ++GWG EDV LY K +   L   R+   G+ H++H  HC   L P+QY+MC+ SK
Sbjct: 47  GFDMEVKGWGGEDVHLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSK 106

Query: 855 ASTFASTMQLAEL----WLEKHLGVRYNRTLS 882
           A   AS   L  L     +E HL  +  RT S
Sbjct: 107 AMDEASRSHLGMLVFREEIETHLHKQAYRTNS 138


>gi|71043500 beta 1,4-N-acetylgalactosaminyltransferase-transferase
           3 [Homo sapiens]
          Length = 998

 Score = 66.6 bits (161), Expect = 1e-10
 Identities = 76/333 (22%), Positives = 140/333 (42%), Gaps = 37/333 (11%)

Query: 509 NAKSRGRLIDFKEIQYGYRRVNPMHGVEYILDLLLLYKRHKGRKLTVPVRRHAYLQQLFS 568
           N +SRGR    + I    +R + + G  Y+L+L LL +  +  +L+  V    +  Q   
Sbjct: 682 NQRSRGRY-QLQRIVNVEKRQDQLRGGRYLLELELLEQGQRVVRLSEYVSARGW--QGID 738

Query: 569 KPFFRETEELDVNSLV-ESINSETQSFSFISNSLKILSSFQGAKEMGGHNEKKVHILVPL 627
                E E  ++  LV +  N   Q  +  +   K+    QG       +   VH +VP+
Sbjct: 739 PAGGEEVEARNLQGLVWDPHNRRRQVLNTRAQEPKLCWP-QG---FSWSHRAVVHFVVPV 794

Query: 628 IGRYDIFLRFMENFENMCLI---PKQNVKLVIILFSRDSGQDSSKHIELIKGYQNKYPKA 684
             +     +F+++ EN+  +   P  N+ ++    S D   + +     ++ YQ      
Sbjct: 795 KNQARWVQQFIKDMENLFQVTGDPHFNI-VITDYSSEDMDVEMALKRSKLRSYQ------ 847

Query: 685 EMTLIPMKGEFSRGLGLEMA-SAQFDNDTLLLFCDVDLIFREDFLQRCRDNTIQGQQVYY 743
               + + G F R  GL+       D  +++  CD+ + F    +   R + ++G+  + 
Sbjct: 848 ---YVKLSGNFERSAGLQAGIDLVKDPHSIIFLCDLHIHFPAGVIDAIRKHCVEGKMAFA 904

Query: 744 PIIFSQYDPKVTNGGNPPTDDYFIFSKKTGFWRDYGYGITCIYKSDLLGAGGFDTS--IQ 801
           P++      ++  G  P   +        G+W   G+G+  IYKSDL   GG +T     
Sbjct: 905 PMVM-----RLHCGATPQWPE--------GYWEVNGFGLLGIYKSDLDRIGGMNTKEFRD 951

Query: 802 GWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFH 834
            WG ED +L ++++ +GL   R       H FH
Sbjct: 952 RWGGEDWELLDRILQAGLDVERLSLRNFFHHFH 984


>gi|154689817 beta 1,3-galactosyltransferase-like [Homo sapiens]
          Length = 498

 Score = 63.2 bits (152), Expect = 1e-09
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 23/184 (12%)

Query: 173 LYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGVDDS 232
           ++V V T +K+ G R    ++TW       +E++S     +      P   + +P  D  
Sbjct: 269 IFVAVKTCKKFHGDRIPIVKQTWESQA-SLIEYYSDYTENSI-----PTVDLGIPNTDRG 322

Query: 233 YPPQKKSFMMIKYMHDHYLDKYEWFMRADDDVYIKGDKLEEFLRSLNSSKPLYLGQT--- 289
           +    K+F +++   +   DK  W +  DDD  I   +L+  L   +S +P++LG+    
Sbjct: 323 HCG--KTFAILERFLNRSQDKTAWLVIVDDDTLISISRLQHLLSCYDSGEPVFLGERYGY 380

Query: 290 GLGNIEELGKLGLEPGENFCMGGPGMIFSREVLRRMVPHIGECLREMYTTHEDVEVGRCV 349
           GLG            G ++  GG GM+FSRE +RR++    +C        +D+ +G C 
Sbjct: 381 GLGT----------GGYSYITGGGGMVFSREAVRRLL--ASKCRCYSNDAPDDMVLGMCF 428

Query: 350 RRFG 353
              G
Sbjct: 429 SGLG 432


>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase 4
            [Homo sapiens]
          Length = 1039

 Score = 61.2 bits (147), Expect = 4e-09
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 16/145 (11%)

Query: 693  GEFSRGLGLEMA-SAQFDNDTLLLFCDVDLIFREDFLQRCRDNTIQGQQVYYPIIFSQYD 751
            G F R  GL+    A  D  +++  CD+ + F  + L   R + ++G+  + P++     
Sbjct: 889  GNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMR--- 945

Query: 752  PKVTNGGNPPTDDYFIFSKKTGFWRDYGYGITCIYKSDLLGAGGFDTS--IQGWGLEDVD 809
                + G+ P D +       G+W   G+G+  IYKSD    GG +T      WG ED +
Sbjct: 946  ---LSCGSSPRDPH-------GYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWE 995

Query: 810  LYNKVILSGLRPFRSQEVGVVHIFH 834
            L ++V+ +GL   R +     H +H
Sbjct: 996  LLDRVLQAGLEVERLRLRNFYHHYH 1020



 Score = 37.7 bits (86), Expect = 0.047
 Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 48  YGRSAAGPRAGAQQPLPQPQS----RPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPW 103
           +GR   GP+A   +P  + Q+    R  Q ++  PA   +      EA P +TSF S   
Sbjct: 575 HGRRTGGPQATQPRPPARAQATQGGREGQARTLGPAAPTVDSNLSSEARP-VTSFLSLSQ 633

Query: 104 QQPPPLQQRRRGREPEGATGLPGAPAAEGEPEEEDGGAAGQRRD 147
              P L       E     G PG  AA  + EE  G A G+ R+
Sbjct: 634 VSGPQLPGEGEEEEEGEDDGAPGDEAASEDSEEAAGPALGRWRE 677



 Score = 32.0 bits (71), Expect = 2.6
 Identities = 41/150 (27%), Positives = 50/150 (33%), Gaps = 22/150 (14%)

Query: 41  GSSLCSYYGRSAAGPRAGAQQPLPQPQSRPRQEQSPP-PARQDLQGPPLPEAAPGITSFR 99
           G  L S     AA PR+G Q P P   ++P    +PP P R    G P    A    +  
Sbjct: 441 GELLDSLEPTEAAPPRSGPQSPAPAAPAQPGATLAPPTPPRPRDGGTPRHSRALSWAARA 500

Query: 100 SSPW--------------QQPPPLQQRRRGREPEGATGLPGAPAAEGEP------EEEDG 139
           + P               +QPPP     R R  + A+    AP A   P           
Sbjct: 501 ARPLPLFLGRAPPPRPAVEQPPPKVYVTRVRPGQRASPRAPAPRAPWPPFPGVFLHPRPL 560

Query: 140 GAAGQRRDGRPGSSHNGSGDGGAAAPSARP 169
                R   RP   H G   GG  A   RP
Sbjct: 561 PRVQLRAPPRPPRPH-GRRTGGPQATQPRP 589


>gi|19924099 synapsin I isoform Ia [Homo sapiens]
          Length = 705

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 62/193 (32%), Positives = 80/193 (41%), Gaps = 20/193 (10%)

Query: 55  PRAGAQQPLPQPQSR--PRQEQSPPPARQDLQG------PPLPEAAPGITSFRSSPWQQP 106
           P+ G  QP P PQ +  P Q++ PP  +Q L G       PLP+  P  TS    P  Q 
Sbjct: 463 PQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQA 522

Query: 107 PPLQQRRRGREPEGATGLPGAPAAEGEPEEEDGGAAGQRRDGRPGSSHNGSGDGGA--AA 164
            P  Q  +GR+     G PGAP A   P       + QR+ G P ++   S  G A   A
Sbjct: 523 APPTQ-GQGRQSRPVAGGPGAPPAARPP----ASPSPQRQAGPPQATRQTSVSGPAPPKA 577

Query: 165 PSARPRDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPP--PLP 222
             A P      G    QK  G      Q + A  +P R    ++QQP  +G  P   P P
Sbjct: 578 SGAPPGGQQRQG--PPQKPPGPAGPTRQASQAGPVP-RTGPPTTQQPRPSGPGPAGRPKP 634

Query: 223 VIALPGVDDSYPP 235
            +A     D  PP
Sbjct: 635 QLAQKPSQDVPPP 647



 Score = 44.7 bits (104), Expect = 4e-04
 Identities = 57/205 (27%), Positives = 78/205 (38%), Gaps = 26/205 (12%)

Query: 26  LIAPRVAELSERKRRGSSLCSYYGRSAAG--PRAGA----QQPLPQPQSRPRQEQSPPPA 79
           L+  ++A+   R+R+  +     GR + G  P  GA    +Q   QP   P Q++ PP  
Sbjct: 409 LVVNKMAQALPRQRQRDASP---GRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQG 465

Query: 80  RQDLQGPPLPEAAPGITSFRSSPWQQ--PPPLQQRRRGREPEGATGLP-GAPAAEGEPEE 136
                GPP P   P     +  P QQ  PP  QQ   G  P   + LP   P+    P++
Sbjct: 466 -----GPPQPGPGP---QRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQ 517

Query: 137 EDGGAA----GQRRDGRPGSSHNGSGDGGAAAPSARPRDFLYVGVMTAQKYLGSRALAAQ 192
               AA    GQ R  RP +   G G   AA P A P      G   A +       A  
Sbjct: 518 PASQAAPPTQGQGRQSRPVA--GGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPP 575

Query: 193 RTWARFIPGRVEFFSSQQPPNAGQP 217
           +       G+      Q+PP    P
Sbjct: 576 KASGAPPGGQQRQGPPQKPPGPAGP 600



 Score = 33.5 bits (75), Expect = 0.89
 Identities = 51/173 (29%), Positives = 63/173 (36%), Gaps = 34/173 (19%)

Query: 52  AAGPRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQ 111
           A GP A      P   S  RQ   P   RQ     P P  A G            PP  Q
Sbjct: 537 AGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASG-----------APPGGQ 585

Query: 112 RRRG--REPEGATGLPGAPAAEGEPEEEDGGAAGQRRDGRPGSSHNGSGDGGAAAPSARP 169
           +R+G  ++P G  G P   A++  P    G    Q+   RP      SG G    P+ RP
Sbjct: 586 QRQGPPQKPPGPAG-PTRQASQAGPVPRTGPPTTQQ--PRP------SGPG----PAGRP 632

Query: 170 RDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLP 222
           +  L      AQK   S+ +    T A   P   +   SQ   NA   P P P
Sbjct: 633 KPQL------AQK--PSQDVPPPATAAAGGPPHPQLNKSQSLTNAFNLPEPAP 677


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 62/193 (32%), Positives = 80/193 (41%), Gaps = 20/193 (10%)

Query: 55  PRAGAQQPLPQPQSR--PRQEQSPPPARQDLQG------PPLPEAAPGITSFRSSPWQQP 106
           P+ G  QP P PQ +  P Q++ PP  +Q L G       PLP+  P  TS    P  Q 
Sbjct: 463 PQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQA 522

Query: 107 PPLQQRRRGREPEGATGLPGAPAAEGEPEEEDGGAAGQRRDGRPGSSHNGSGDGGA--AA 164
            P  Q  +GR+     G PGAP A   P       + QR+ G P ++   S  G A   A
Sbjct: 523 APPTQ-GQGRQSRPVAGGPGAPPAARPP----ASPSPQRQAGPPQATRQTSVSGPAPPKA 577

Query: 165 PSARPRDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPP--PLP 222
             A P      G    QK  G      Q + A  +P R    ++QQP  +G  P   P P
Sbjct: 578 SGAPPGGQQRQG--PPQKPPGPAGPTRQASQAGPVP-RTGPPTTQQPRPSGPGPAGRPKP 634

Query: 223 VIALPGVDDSYPP 235
            +A     D  PP
Sbjct: 635 QLAQKPSQDVPPP 647



 Score = 44.7 bits (104), Expect = 4e-04
 Identities = 57/205 (27%), Positives = 78/205 (38%), Gaps = 26/205 (12%)

Query: 26  LIAPRVAELSERKRRGSSLCSYYGRSAAG--PRAGA----QQPLPQPQSRPRQEQSPPPA 79
           L+  ++A+   R+R+  +     GR + G  P  GA    +Q   QP   P Q++ PP  
Sbjct: 409 LVVNKMAQALPRQRQRDASP---GRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQG 465

Query: 80  RQDLQGPPLPEAAPGITSFRSSPWQQ--PPPLQQRRRGREPEGATGLP-GAPAAEGEPEE 136
                GPP P   P     +  P QQ  PP  QQ   G  P   + LP   P+    P++
Sbjct: 466 -----GPPQPGPGP---QRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQ 517

Query: 137 EDGGAA----GQRRDGRPGSSHNGSGDGGAAAPSARPRDFLYVGVMTAQKYLGSRALAAQ 192
               AA    GQ R  RP +   G G   AA P A P      G   A +       A  
Sbjct: 518 PASQAAPPTQGQGRQSRPVA--GGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPP 575

Query: 193 RTWARFIPGRVEFFSSQQPPNAGQP 217
           +       G+      Q+PP    P
Sbjct: 576 KASGAPPGGQQRQGPPQKPPGPAGP 600



 Score = 32.3 bits (72), Expect = 2.0
 Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 52  AAGPRAGAQQPLPQPQSRPRQEQSPPPARQ-DLQGPPLPEA--APGITSFRSSPWQQPPP 108
           A GP A      P   S  RQ   P   RQ  + GP  P+A  AP     R  P Q+PP 
Sbjct: 537 AGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPG 596

Query: 109 LQQRRRGREPEGATGLPGAPAAEGEPEEEDGGAAGQ 144
                R     G     G P  + +P     G AG+
Sbjct: 597 PAGPTRQASQAGPVPRTGPPTTQ-QPRPSGPGPAGR 631



 Score = 31.2 bits (69), Expect = 4.4
 Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 53  AGPRAGAQQPLPQPQSRPRQEQSPP--PARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQ 110
           A P+A    P  Q +  P Q+   P  P RQ  Q  P+P   P  T         P    
Sbjct: 573 APPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRP 632

Query: 111 QRRRGREPEGATGLPGAPAAEGEPEEE 137
           + +  ++P      P   AA G P  +
Sbjct: 633 KPQLAQKPSQDVPPPATAAAGGPPHPQ 659


>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
           sapiens]
          Length = 309

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 52/186 (27%), Positives = 61/186 (32%), Gaps = 19/186 (10%)

Query: 55  PRAGAQQPLPQPQSRPRQEQSPPP--ARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQR 112
           P+ G Q   P P  RP + + PPP    Q    PP P    G      +  Q PPP   +
Sbjct: 125 PQGGNQSQGPPP--RPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGK 182

Query: 113 RRGREPEGATGLPGAPAAEGEPE--EEDGGAAGQRRDGRPGSSHNGSGDGGAAAPSARPR 170
             G  P+G     G P   G+PE     GG   Q    RPG        GG       P 
Sbjct: 183 PEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPH 242

Query: 171 DFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGVD 230
                      K  G       +      PGR +      PP  G P  PLP  A     
Sbjct: 243 ---------PGKPQGPPPQEGNKPQRPPPPGRPQ----GPPPPGGNPQQPLPPPAGKPQG 289

Query: 231 DSYPPQ 236
              PPQ
Sbjct: 290 PPPPPQ 295



 Score = 50.1 bits (118), Expect = 9e-06
 Identities = 37/119 (31%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 58  GAQQPLPQPQSRPRQEQSPPPARQDLQGPP----LPEAAPGITSFRSSPWQQPPPLQQRR 113
           G  QP   P    + E  PP      QGPP     PE  P     +S   Q PPP   + 
Sbjct: 43  GGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQS---QGPPPRPGKP 99

Query: 114 RGREPEGATGLPGAPAAEGEPE--EEDGGAAGQRRDGRPGSSHNGSGDGGAAAPSARPR 170
            G+ P+G     G P   G+PE     GG   Q    RPG        GG  +    PR
Sbjct: 100 EGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPR 158



 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 36/124 (29%), Positives = 45/124 (36%), Gaps = 11/124 (8%)

Query: 49  GRSAAGPRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPP 108
           G  + GP     +P  QP     Q Q PPP     +GPP P+          +  Q PPP
Sbjct: 86  GNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPP-PQGG--------NQSQGPPP 136

Query: 109 LQQRRRGREPEGATGLPGAPAAEGEPE--EEDGGAAGQRRDGRPGSSHNGSGDGGAAAPS 166
              +  G  P+G     G P   G+PE     GG   Q     PG        GG  +  
Sbjct: 137 RPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQG 196

Query: 167 ARPR 170
             PR
Sbjct: 197 PPPR 200



 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 36/119 (30%), Positives = 44/119 (36%), Gaps = 6/119 (5%)

Query: 55  PRAGAQQPLPQPQSRPRQEQSPPP--ARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQR 112
           P+ G Q   P P  RP + + PPP    Q    PP P    G      +  Q PPP   +
Sbjct: 62  PQGGNQSQGPPP--RPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGK 119

Query: 113 RRGREPEGATGLPGAPAAEGEPE--EEDGGAAGQRRDGRPGSSHNGSGDGGAAAPSARP 169
             G  P+G     G P   G+PE     GG   Q    RPG        GG  +    P
Sbjct: 120 PEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPP 178



 Score = 43.9 bits (102), Expect = 7e-04
 Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 12/108 (11%)

Query: 65  QPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQRRRGREPEGATGL 124
           +PQ   + +++PPP       P  PE  P     +S   Q PPP   +  G  P+G    
Sbjct: 40  RPQGGNQPQRTPPP-------PGKPEGRPPQGGNQS---QGPPPRPGKPEGPPPQGGNQS 89

Query: 125 PGAPAAEGEPEEE--DGGAAGQRRDGRPGSSHNGSGDGGAAAPSARPR 170
            G P   G+PE +   GG   Q    RPG        GG  +    PR
Sbjct: 90  QGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPR 137



 Score = 37.7 bits (86), Expect = 0.047
 Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 49  GRSAAGPRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPP 108
           G  + GP     +P   P     Q Q PPP     +GPP P+   G  S    P    P 
Sbjct: 170 GNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPP-PQG--GNQSQGPPPRPGKPE 226

Query: 109 LQQRRRGREPEGATGLPGAPAAEGEPEEEDGGAAGQRRDGRP 150
               + G +P+G    PG P  +G P +E          GRP
Sbjct: 227 GPPSQGGNKPQGPPPHPGKP--QGPPPQEGNKPQRPPPPGRP 266



 Score = 35.0 bits (79), Expect = 0.31
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 49  GRSAAGPRAGAQQPLPQPQSRPRQEQSPPPARQDL-QGPPLPEAAPGITSFRSSPWQQPP 107
           G+    P  G  +P   P   P + Q PPP   +  Q PP P    G      +P Q  P
Sbjct: 223 GKPEGPPSQGGNKP-QGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLP 281

Query: 108 PLQQRRRGREPEGATGLPGAPAAEGEPEE 136
           P   + +G  P    G P  P  +G+P +
Sbjct: 282 PPAGKPQGPPPPPQGGRPHRP-PQGQPPQ 309



 Score = 33.5 bits (75), Expect = 0.89
 Identities = 35/138 (25%), Positives = 43/138 (31%), Gaps = 43/138 (31%)

Query: 104 QQPPPLQQRRRGREPEGATGLPGAPAAEGEPE--EEDGGAAGQRRDGRPGSSHNGSGDGG 161
           + P  +  +  GR P+G       P   G+PE     GG   Q    RPG        GG
Sbjct: 27  ESPSVISGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGG 86

Query: 162 AAAPSARPRDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAG---QPP 218
             +    PR                             PG+ E     QPP  G   Q P
Sbjct: 87  NQSQGPPPR-----------------------------PGKPE----GQPPQGGNQSQGP 113

Query: 219 PPLPVIALPGVDDSYPPQ 236
           PP      PG  +  PPQ
Sbjct: 114 PP-----RPGKPEGPPPQ 126


>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 221

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 44/147 (29%), Positives = 55/147 (37%), Gaps = 16/147 (10%)

Query: 30  RVAELSERKRRGSSLCSYYGRSAAGPRA--GAQQPLPQPQSRPRQEQSPPPARQDLQGPP 87
           RV     R RRG          A GPRA  G  +  P P S PR    P   R      P
Sbjct: 51  RVRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERP 110

Query: 88  LPEAAPGITSFRSSPWQQPPPLQQRRRGREPEGATGLPGAPAAEGEPEEE------DGGA 141
           L +A     S   +P     P +      +P G  G P     +  PEE+      +GG+
Sbjct: 111 LAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLEGGS 170

Query: 142 AGQRRDG-------RPGSSHNGSGDGG 161
           A Q +DG       RPG    G+  GG
Sbjct: 171 A-QPQDGEDGEDAPRPGRVETGTQTGG 196


>gi|74271816 radical fringe [Homo sapiens]
          Length = 331

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 57/229 (24%), Positives = 89/229 (38%), Gaps = 33/229 (14%)

Query: 163 AAPSARPRDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLP 222
           AAPS RP D +++ V T +K  G R     RTW      +   F+    P          
Sbjct: 51  AAPSLRPDD-VFIAVKTTRKNHGPRLRLLLRTWISRARQQTFIFTDGDDPE--------- 100

Query: 223 VIALPGVD-------DSYPPQKKSFMMIKYMHDHYLDK-YEWFMRADDDVYIKGDKLEEF 274
            + L G D        +   ++     +   +D +++   +WF   DDD Y+    L   
Sbjct: 101 -LELQGGDRVINTNCSAVRTRQALCCKMSVEYDKFIESGRKWFCHVDDDNYVNARSLLHL 159

Query: 275 LRSLNSSKPLYLGQTGLGNIEEL------GKLGLEPGENFCMGGPGMIFSREVLRRMVP- 327
           L S + S+ +YLG+  L +  E       G+        F  GG G   SR +  +M P 
Sbjct: 160 LSSFSPSQDVYLGRPSLDHPIEATERVQGGRTVTTVKFWFATGGAGFCLSRGLALKMSPW 219

Query: 328 -HIGECL--REMYTTHEDVEVGRCVRRFGGTQCVWSYEMQQLFHENYEH 373
             +G  +   E     +D  VG  V    G + + S     LFH + E+
Sbjct: 220 ASLGSFMSTAEQVRLPDDCTVGYIVEGLLGARLLHS----PLFHSHLEN 264


>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
          Length = 689

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 40/116 (34%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query: 54  GPRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQRR 113
           G R    QP PQ +  P+ EQ PP       G P P+  PG+   + SP +  P    R 
Sbjct: 391 GERGPVGQPGPQGRQGPKGEQGPP-------GIPGPQGLPGVKGDKGSPGKTGP----RG 439

Query: 114 RGREPEGATGLPGAPAAEGEPEEEDGGAAGQRRDGRPGSSHNGSGDGGAAAPSARP 169
           +  +P G  GLPG    +GE   E G    Q   G PG     SGD GA      P
Sbjct: 440 KVGDP-GVAGLPGEKGEKGE-SGEPGPKGQQGVRGEPGYP-GPSGDAGAPGVQGYP 492



 Score = 37.4 bits (85), Expect = 0.062
 Identities = 36/129 (27%), Positives = 46/129 (35%), Gaps = 11/129 (8%)

Query: 70  PRQEQSPP--PARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQRRRGREPE---GATGL 124
           P     PP  P +Q   G P P   PGI           P  ++  +G   E   G  G+
Sbjct: 557 PPGPPGPPGYPGKQGPHGHPGPRGVPGIVGAVGQIGNTGPKGKRGEKGDPGEVGRGHPGM 616

Query: 125 PGAPAAEGEPEEEDGGAAGQRRDGRPGSSHNGSGDGGAAAPSARPRDFLYVGVMTAQKYL 184
           PG P   G P     G  GQ  +G+ G   +    G A  P   P      G       L
Sbjct: 617 PGPPGIPGLP-----GRPGQAINGKDGDRGSPGAPGEAGRPGL-PGPVGLPGFCEPAACL 670

Query: 185 GSRALAAQR 193
           G+ A A+ R
Sbjct: 671 GASAYASAR 679



 Score = 35.4 bits (80), Expect = 0.23
 Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 77  PPARQDLQGPPLPEAAPG---ITSFRSSPWQQPPPLQQRRRGRE----PEGATGLPGAPA 129
           PP  +   GPP P   PG   I      P +  PP  +   G+     P+G  G+ G   
Sbjct: 28  PPGERGPPGPPGPPGVPGSDGIDGDNGPPGKAGPPGPKGEPGKAGPDGPDGKPGIDGLTG 87

Query: 130 AEGEPEEED-GGAAGQRRDGRPGSSHNGSGDGGAAAPSARP 169
           A+GEP      G  GQ   G PG    G    G A P   P
Sbjct: 88  AKGEPGPMGIPGVKGQ--PGLPGPP--GLPGPGFAGPPGPP 124



 Score = 33.1 bits (74), Expect = 1.2
 Identities = 34/108 (31%), Positives = 42/108 (38%), Gaps = 25/108 (23%)

Query: 77  PPARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQRRRGREPEGATGLPGAPAAEGEPEE 136
           PP  +  +GPP      G      SP  + P   Q   G  P+GATG PG    +G P  
Sbjct: 263 PPGEEGPRGPP---GRAGEKGDEGSPGIRGP---QGITG--PKGATGPPGINGKDGTPGT 314

Query: 137 ED-GGAAGQRRDGRPGS--------------SHNGSGDGGAAAPSARP 169
               G+AGQ   G+PGS              +  G GD G   P   P
Sbjct: 315 PGMKGSAGQA--GQPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQGLP 360



 Score = 31.6 bits (70), Expect = 3.4
 Identities = 34/115 (29%), Positives = 39/115 (33%), Gaps = 11/115 (9%)

Query: 116 REPEGATGLPGAPAAEGEPEEE--DGGAAGQRRDGRPGSSHNGSGDGGAAAPSARPRDFL 173
           R P G  G PG P   G P  +  DG      + G PG      G  G   P  +P    
Sbjct: 26  RGPPGERGPPGPPGPPGVPGSDGIDGDNGPPGKAGPPGPK-GEPGKAGPDGPDGKPGIDG 84

Query: 174 YVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPG 228
             G       +G   +  Q       PG         P  AG P PP PV  LPG
Sbjct: 85  LTGAKGEPGPMGIPGVKGQ-------PGLPGPPGLPGPGFAGPPGPPGPV-GLPG 131



 Score = 31.2 bits (69), Expect = 4.4
 Identities = 27/87 (31%), Positives = 30/87 (34%), Gaps = 14/87 (16%)

Query: 55  PRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQRRR 114
           P    Q  LP P   P    + PP      GPP P   PG    R  P   P P      
Sbjct: 98  PGVKGQPGLPGPPGLPGPGFAGPP------GPPGPVGLPGEIGIRG-PKGDPGP------ 144

Query: 115 GREPEGATGLPGAPAAEGEPEEEDGGA 141
              P G  G PG P   G  +  +G A
Sbjct: 145 -DGPSGPPGPPGKPGRPGTIQGLEGSA 170



 Score = 31.2 bits (69), Expect = 4.4
 Identities = 34/120 (28%), Positives = 45/120 (37%), Gaps = 19/120 (15%)

Query: 53  AGPRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQR 112
           AG R     P  Q +  P+ +       Q + GPP P+   G            P +   
Sbjct: 195 AGKRGILGDPGHQGKPGPKGDVGAS-GEQGIPGPPGPQGIRGY-----------PGMAGP 242

Query: 113 RRGREPEGATGLPGAPAAEGEPEEE----DGGAAGQRRD-GRPG--SSHNGSGDGGAAAP 165
           +    P G  G+ GA  A G P EE      G AG++ D G PG       +G  GA  P
Sbjct: 243 KGETGPHGYKGMVGAIGATGPPGEEGPRGPPGRAGEKGDEGSPGIRGPQGITGPKGATGP 302



 Score = 31.2 bits (69), Expect = 4.4
 Identities = 24/85 (28%), Positives = 29/85 (34%), Gaps = 10/85 (11%)

Query: 85  GPPLPEAAPGITSFRSSPWQQPPPLQQRRRGREPEGATGLPGAPAAEGEPEEEDGGAAGQ 144
           G P      G+      P  +  P  Q   G  P+G  G  G P  EGEP        G 
Sbjct: 325 GQPGSPGHQGLAGVPGQPGTKGGPGDQGEPG--PQGLPGFSGPPGKEGEP--------GP 374

Query: 145 RRDGRPGSSHNGSGDGGAAAPSARP 169
           R +  P       GD G   P  +P
Sbjct: 375 RGEIGPQGIMGQKGDQGERGPVGQP 399


>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
           sapiens]
          Length = 247

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 53/185 (28%), Positives = 67/185 (36%), Gaps = 21/185 (11%)

Query: 55  PRAGAQQPLPQPQSRPRQEQSPPP-ARQDLQGPPLPEAAP-GITSFRSSPWQQPPPLQQR 112
           P+ G Q   P P   P + Q PPP      QGPP P   P G      +  Q PPP   +
Sbjct: 41  PQGGNQPQRPPPP--PGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGK 98

Query: 113 RRGREPEGATGLPGAPAAEGEPEE--EDGGAAGQRRDGRPGSSHNGSGDGGAAAPSARPR 170
                P+G     G P   G+PE     GG    R    PG        GG  +    P 
Sbjct: 99  PERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPH 158

Query: 171 DFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGVD 230
                G    +   G+++ +     AR  PG+ +    QQ  N  Q PPP      PG  
Sbjct: 159 PGKPEGPPPQE---GNKSRS-----ARSPPGKPQ-GPPQQEGNKPQGPPP------PGKP 203

Query: 231 DSYPP 235
              PP
Sbjct: 204 QGPPP 208



 Score = 41.2 bits (95), Expect = 0.004
 Identities = 36/108 (33%), Positives = 46/108 (42%), Gaps = 15/108 (13%)

Query: 55  PRAGAQQPLPQPQ----SRP-----RQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQ 105
           P+ G Q   P P      RP      Q Q PPP     +GPP P+      S RS P + 
Sbjct: 125 PQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPP-PQEGNKSRSARSPPGKP 183

Query: 106 PPPLQQRRRGREPEGAT--GLP-GAPAAEGEPEEEDGGAAGQRRDGRP 150
             P QQ   G +P+G    G P G P A G P++     AG+ +   P
Sbjct: 184 QGPPQQE--GNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPPP 229



 Score = 36.6 bits (83), Expect = 0.11
 Identities = 32/125 (25%), Positives = 42/125 (33%), Gaps = 10/125 (8%)

Query: 49  GRSAAGPRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAP-------GITSFRSS 101
           G+    P  G  Q    P    + E+ PP      QG P P   P       G  S R  
Sbjct: 76  GKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPP 135

Query: 102 PWQQPPPLQQRRRGREPEGATGLPGAPAAEGEPEEEDGGAAGQRR-DGRPGSSHNGSGDG 160
           P    P     + G + +G    PG P  EG P +E   +   R   G+P       G+ 
Sbjct: 136 PPPGKPERPPPQGGNQSQGPPPHPGKP--EGPPPQEGNKSRSARSPPGKPQGPPQQEGNK 193

Query: 161 GAAAP 165
               P
Sbjct: 194 PQGPP 198



 Score = 36.6 bits (83), Expect = 0.11
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 59  AQQPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQRRRGREP 118
           A+ P  +PQ  P+QE + P      QGPP P    G      +P Q   P   + +G  P
Sbjct: 176 ARSPPGKPQGPPQQEGNKP------QGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPPP 229

Query: 119 EGATGLPGAPAAEGEPEE 136
               G P  PA   +P +
Sbjct: 230 PPQGGRPPRPAQGQQPPQ 247



 Score = 35.0 bits (79), Expect = 0.31
 Identities = 33/122 (27%), Positives = 41/122 (33%), Gaps = 11/122 (9%)

Query: 49  GRSAAGPRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPP 108
           G  + GP     +P  +P     Q Q PPP       P  PE  P     +S     PP 
Sbjct: 65  GNQSQGPPPPPGKPEGRPPQGGNQSQGPPP------HPGKPERPPPQGGNQSQGTPPPPG 118

Query: 109 LQQRRRGREPEGATGLPGAPAAEGEPEE--EDGGAAGQRRDGRPGSSHNGSGDGGAAAPS 166
             +R     P+G       P   G+PE     GG   Q     PG         G  + S
Sbjct: 119 KPER---PPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRS 175

Query: 167 AR 168
           AR
Sbjct: 176 AR 177



 Score = 30.0 bits (66), Expect = 9.9
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 55  PRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPP 107
           P  G  Q  P     P+Q Q+PP  +   QGPP P    G    R +  QQPP
Sbjct: 198 PPPGKPQGPPPAGGNPQQPQAPPAGKP--QGPPPP--PQGGRPPRPAQGQQPP 246


>gi|58532584 C1GALT1-specific chaperone 1 [Homo sapiens]
          Length = 318

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 55/222 (24%)

Query: 190 AAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGVD--DSYPPQKKSFMMIKYMH 247
           A + TW +    + EFFSS+           + V     +D  D +   +K++   KY  
Sbjct: 85  AVKETWTKHCD-KAEFFSSEN----------VKVFESINMDTNDMWLMMRKAY---KYAF 130

Query: 248 DHYLDKYEWFMRADDDVYIKGDKLEEFLRSLNSSKPLYLGQT-GLGNIEELGKLGLEPGE 306
           D Y D+Y WF  A    +   + L+ FL   + S+P YLG T   G++E +G  G     
Sbjct: 131 DKYRDQYNWFFLARPTTFAIIENLKYFLLKKDPSQPFYLGHTIKSGDLEYVGMEG----- 185

Query: 307 NFCMGGPGMIFSREVLRRM--VPHIGECLRE----MYTTHEDVEVGRCVRRFGGTQCVWS 360
                  G++ S E ++R+  + +I E   E    ++   ED ++  C++  G       
Sbjct: 186 -------GIVLSVESMKRLNSLLNIPEKCPEQGGMIWKISEDKQLAVCLKYAG------- 231

Query: 361 YEMQQLFHENYEHNRKGYIQDLHNSK-----IHAAITLHPNK 397
                +F EN E +  G  +D+ N+K     I  A+T HPN+
Sbjct: 232 -----VFAENAE-DADG--KDVFNTKSVGLSIKEAMTYHPNQ 265


>gi|23097329 C1GALT1-specific chaperone 1 [Homo sapiens]
          Length = 318

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 55/222 (24%)

Query: 190 AAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGVD--DSYPPQKKSFMMIKYMH 247
           A + TW +    + EFFSS+           + V     +D  D +   +K++   KY  
Sbjct: 85  AVKETWTKHCD-KAEFFSSEN----------VKVFESINMDTNDMWLMMRKAY---KYAF 130

Query: 248 DHYLDKYEWFMRADDDVYIKGDKLEEFLRSLNSSKPLYLGQT-GLGNIEELGKLGLEPGE 306
           D Y D+Y WF  A    +   + L+ FL   + S+P YLG T   G++E +G  G     
Sbjct: 131 DKYRDQYNWFFLARPTTFAIIENLKYFLLKKDPSQPFYLGHTIKSGDLEYVGMEG----- 185

Query: 307 NFCMGGPGMIFSREVLRRM--VPHIGECLRE----MYTTHEDVEVGRCVRRFGGTQCVWS 360
                  G++ S E ++R+  + +I E   E    ++   ED ++  C++  G       
Sbjct: 186 -------GIVLSVESMKRLNSLLNIPEKCPEQGGMIWKISEDKQLAVCLKYAG------- 231

Query: 361 YEMQQLFHENYEHNRKGYIQDLHNSK-----IHAAITLHPNK 397
                +F EN E +  G  +D+ N+K     I  A+T HPN+
Sbjct: 232 -----VFAENAE-DADG--KDVFNTKSVGLSIKEAMTYHPNQ 265


>gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
           sapiens]
          Length = 1183

 Score = 48.5 bits (114), Expect = 3e-05
 Identities = 68/220 (30%), Positives = 84/220 (38%), Gaps = 30/220 (13%)

Query: 6   RRPWMSVALGLVLGFTAASWLIAPRVAELSERKRRGSSLCSYYGRSAA--GPRAGAQQPL 63
           +R   +  LG VL   AAS    P   E    + RG S  S  G       P  GA    
Sbjct: 635 QRVAQAAELGRVLVPQAASEE-TPSTEEPPGERLRGESRSSGSGERGPEEAPEGGAAAAR 693

Query: 64  PQPQSRPRQEQSPPPA--RQDLQGPPLPEAAPGITSFRS-------SPWQQPPPLQQRRR 114
            Q    P  E   PP   R+  Q P        +TSFR        SP   P P  + RR
Sbjct: 694 GQRPRVPALEPPQPPRGLRKGAQEPGKRPTFSKVTSFRKGRPLATESPGGVPAPTTEGRR 753

Query: 115 GREPEGATGLP--GAPAAEGE--PEEEDGGA----------AGQRRDGRPGSSHNG-SGD 159
                G  GLP    PAA G   P    G A          AG R  G  G+ H G SGD
Sbjct: 754 WGS-SGPEGLPRENPPAAAGRDAPPLHHGDASAWPEFVPQAAGDRTAGPAGAGHTGTSGD 812

Query: 160 GGAAAPSARPRDFLYVGVMTAQKYLGSRALAAQRTWARFI 199
            G+  PS+   +     + T +K L +R   A +T++ FI
Sbjct: 813 LGSRGPSSESCN--AKRLKTTEKKLRARLALAHKTFSNFI 850


>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
           preproprotein [Homo sapiens]
          Length = 331

 Score = 47.8 bits (112), Expect = 5e-05
 Identities = 53/182 (29%), Positives = 71/182 (39%), Gaps = 33/182 (18%)

Query: 55  PRAGAQQPLPQ------PQSRPRQEQSPPP-ARQDLQGPPLPEAAPGITSFRSSPWQQPP 107
           P    Q P PQ      P+S P + Q PPP      QGPP P   P          Q PP
Sbjct: 134 PPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKP----------QGPP 183

Query: 108 PLQQRRRGREPEGATGLPGAPAAEGEPEEEDGGAAGQRRDGRPGSS--HNGSGDGGAAAP 165
           P    + G++P+G    PG P  +G P + D   + Q   G+P       G+   G   P
Sbjct: 184 P----QGGKKPQGPPP-PGKP--QGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPP 236

Query: 166 SARPRDFLYVGVMTAQ------KYLGSRALAAQRTW-ARFIPGRVEFFSSQQPPNAGQPP 218
             +P+     G    Q      K  G  A    ++  AR  PG+ +    Q+  N   PP
Sbjct: 237 PGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPP 296

Query: 219 PP 220
           PP
Sbjct: 297 PP 298



 Score = 42.4 bits (98), Expect = 0.002
 Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 9/124 (7%)

Query: 49  GRSAAGPRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPP 108
           G    GP     +P   P    ++ Q PPP  +    PP  + +    S    P Q PPP
Sbjct: 166 GNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKP-QGPPP 224

Query: 109 LQQRRRGREPEGATGLPGAPAAEGEPEEEDGGAAGQRRDGRPGS--SHNGSGDGGAAAPS 166
               + G +P+G    PG P  +G P +      G    G+P    +  GS    A +P 
Sbjct: 225 ----QGGNQPQGPPPPPGKP--QGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPP 278

Query: 167 ARPR 170
            +P+
Sbjct: 279 GKPQ 282



 Score = 40.8 bits (94), Expect = 0.006
 Identities = 52/190 (27%), Positives = 69/190 (36%), Gaps = 27/190 (14%)

Query: 49  GRSAAGPRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPW--QQP 106
           G    GP     +P   P     + Q PPP  +  QGPP P+      S RS P   Q P
Sbjct: 44  GNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP-QGPP-PQGDKS-RSPRSPPGKPQGP 100

Query: 107 PPLQQRRRGREPEGATGLPGAPAAEGEPEEEDGGAAGQRRDGRP-GSSHNGSGDGGAAAP 165
           PP    + G +P+G    PG P  +G P +      G    G+P G    G       +P
Sbjct: 101 PP----QGGNQPQGPPPPPGKP--QGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSP 154

Query: 166 SARPRDFLYVGVMTAQ-------KYLGSRALAAQRTWARFIPGRVE--------FFSSQQ 210
             +P+     G    Q       K  G      ++      PG+ +          SSQ 
Sbjct: 155 PGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQS 214

Query: 211 PPNAGQPPPP 220
           PP   Q PPP
Sbjct: 215 PPGKPQGPPP 224



 Score = 38.9 bits (89), Expect = 0.021
 Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 49  GRSAAGPRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLP---EAAPGITSFRSSPWQQ 105
           G+    P  G  QP   P    + +  PP      QGPP P   +  P     +S   + 
Sbjct: 217 GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARS 276

Query: 106 PPPLQQ---RRRGREPEGATGLPGAPAAEGEPEEEDGGAAGQ 144
           PP   Q   ++ G  P+G       P A G P++     AGQ
Sbjct: 277 PPGKPQGPPQQEGNNPQGP-----PPPAGGNPQQPQAPPAGQ 313



 Score = 37.0 bits (84), Expect = 0.081
 Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 24/120 (20%)

Query: 59  AQQPLPQPQSRP----RQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQR-- 112
           +Q P  +PQ  P     Q Q PPP     QGPP P+         + P   PPP + +  
Sbjct: 212 SQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP-PQGG-------NKPQGPPPPGKPQGP 263

Query: 113 --RRGREPEGATGLPGAPAAEGEPEEEDGGAAGQRRDGRPGSSHNGSGDGGAAAPSARPR 170
             + G + + A   PG P  +G P++E     G      P     G+     A P+ +P+
Sbjct: 264 PAQGGSKSQSARSPPGKP--QGPPQQEGNNPQG------PPPPAGGNPQQPQAPPAGQPQ 315


>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
           sapiens]
          Length = 678

 Score = 47.0 bits (110), Expect = 8e-05
 Identities = 52/183 (28%), Positives = 65/183 (35%), Gaps = 25/183 (13%)

Query: 74  QSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQRRRGREPEGATGLPGAPAAEGE 133
           Q  PP  Q   GPP P   PGI         + PP         P G  G PG P A G+
Sbjct: 24  QRGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPP--------GPPGPAGEPGKPGAPGK 75

Query: 134 PEEEDGGAAG-QRRDGRPGSSHNGSGDGGAAAPSARPRDFLYVGVMTAQKYLGSRALAAQ 192
           P     GA G    DG PGS  +    G    P +  R F   G+       G+  L  +
Sbjct: 76  PGTP--GADGLTGPDGSPGSIGSKGQKGEPGVPGS--RGFPGRGIPGPPGPPGTAGLPGE 131

Query: 193 --RTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIAL----PGVDDSYPPQKKSFMMIKYM 246
             R      PGR      + PP    PP P   I      P   ++ PP +  +  +  M
Sbjct: 132 LGRVGPVGDPGR------RGPPGPPGPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPGM 185

Query: 247 HDH 249
             H
Sbjct: 186 RGH 188



 Score = 39.7 bits (91), Expect = 0.012
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 18/139 (12%)

Query: 83  LQGPPLPEAAPGITSFRSSPWQQPPPLQQRRRG-REPEGATGLPGAPAAEGEPEEEDGGA 141
           L G P P+  PG    +    Q+ PP +   +G R  EGA G+PG P  +G     D G 
Sbjct: 245 LDGEPGPQGLPGAPGDQG---QRGPPGEAGPKGDRGAEGARGIPGLPGPKG-----DTGL 296

Query: 142 AG-QRRDGRPGSSHNGSGDGGAAAPSARPRDFLYVGVMTAQKYLGSRALAAQR--TWARF 198
            G   RDG PG      G+ G   P   P D    G+       G++ +A ++  T A  
Sbjct: 297 PGVDGRDGIPGMP-GTKGEPGKPGP---PGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPG 352

Query: 199 IPGRVEFFSSQQPPNAGQP 217
            PG++   +S +P   G P
Sbjct: 353 KPGQMG--NSGKPGQQGPP 369



 Score = 36.6 bits (83), Expect = 0.11
 Identities = 47/175 (26%), Positives = 63/175 (36%), Gaps = 31/175 (17%)

Query: 83  LQGPPLPEAAPGITSFRSSPWQQPPPLQQRRRGRE----------------PEGATGLPG 126
           L G P P   PG+   R    +  P  +Q   G E                P+G+ G PG
Sbjct: 407 LPGLPGPPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPG 466

Query: 127 APAAEGEPEEEDG--GAAGQRRDGRPG-----SSHNGSGDGGAAAPSAR-PRD--FLYVG 176
            P   G PE   G  G  G R  G PG          +G  G   P  R P D     V 
Sbjct: 467 EPGLRG-PEGSRGLPGVEGPR--GPPGPRGVQGEQGATGLPGVQGPPGRAPTDQHIKQVC 523

Query: 177 VMTAQKYLGSRALAAQR--TWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGV 229
           +   Q++    A + +R  + A  +PGR        PP     P  + +  LPG+
Sbjct: 524 MRVIQEHFAEMAASLKRPDSGATGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGI 578



 Score = 34.3 bits (77), Expect = 0.52
 Identities = 30/98 (30%), Positives = 36/98 (36%), Gaps = 20/98 (20%)

Query: 69  RPRQEQSPPPARQDLQGPPLPEAA---PGITSFRSSPWQQPPPL------------QQRR 113
           RP    +  P R    GPP P      PG    R  P  + PP             ++  
Sbjct: 540 RPDSGATGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGE 599

Query: 114 RGREPEGATGLPGAPAAEGEPEEEDGGAAGQRRDGRPG 151
           RG    G  GLPGA    G+P     G A   R+GR G
Sbjct: 600 RGPPGRGPNGLPGAIGLPGDP-----GPASYGRNGRDG 632


>gi|32307177 forkhead box G1 [Homo sapiens]
          Length = 489

 Score = 47.0 bits (110), Expect = 8e-05
 Identities = 36/111 (32%), Positives = 44/111 (39%), Gaps = 19/111 (17%)

Query: 62  PLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSS-----PWQQPPPLQQRRRGR 116
           P PQP   P+Q+Q PPP     Q PP    AP     +       P   PPP      G 
Sbjct: 61  PAPQPPPPPQQQQPPPPPPPAPQ-PPQTRGAPAADDDKGPQQLLLPPPPPPPPAAALDGA 119

Query: 117 EPEGATGL------PGAPAAEGEPEEEDGGAAGQRRDGRPGSSHNGSGDGG 161
           + +G  G       PG  A  G  E+E G  AG       G    G+G+GG
Sbjct: 120 KADGLGGKGEPGGGPGELAPVGPDEKEKGAGAG-------GEEKKGAGEGG 163


>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
          Length = 540

 Score = 47.0 bits (110), Expect = 8e-05
 Identities = 39/103 (37%), Positives = 49/103 (47%), Gaps = 14/103 (13%)

Query: 54  GPRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRS---SPWQQPPPLQ 110
           GPR GAQ P   P+  P Q+    P     +GPP P+  PG+   +    +P Q  PP  
Sbjct: 205 GPR-GAQGPAG-PKGEPGQDGEMGP-----KGPPGPKGEPGVPGKKGDDGTPSQPGPPGP 257

Query: 111 QRRRGRE-PEGATGLPGAPAAEGEP-EEEDGGAAGQRRDGRPG 151
           +   G   P G  G+ GAP  +GEP      GAAG R  G PG
Sbjct: 258 KGEPGSMGPRGENGVDGAPGPKGEPGHRGTDGAAGPR--GAPG 298



 Score = 34.7 bits (78), Expect = 0.40
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 24/88 (27%)

Query: 83  LQGPPLPEAAPGITSFRSSPWQQPPPLQQRRRGREPEGATGLPGAPAAEGEPEEEDGGAA 142
           L+GPP P+  PG           PP +   +      G  GLPGAP  +GE      G  
Sbjct: 319 LKGPPGPQGPPG-----------PPGIPGAK------GELGLPGAPGIDGEK-----GPK 356

Query: 143 GQRRD-GRPGSSHNGSGDGGAAAPSARP 169
           GQ+ D G PG +    G+ G    S  P
Sbjct: 357 GQKGDPGEPGPA-GLKGEAGEMGLSGLP 383



 Score = 32.3 bits (72), Expect = 2.0
 Identities = 44/174 (25%), Positives = 61/174 (35%), Gaps = 29/174 (16%)

Query: 85  GPPLPEAAPGITSFRSSPWQQPPPLQQRRRGRE----------PEGATGLPGAPAAEGEP 134
           GPP     PG T        Q P   +   G++          P+G  G+PG    +G P
Sbjct: 190 GPPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKGPPGPKGEPGVPGKKGDDGTP 249

Query: 135 EEEDGGAAGQRRDGRPGS--SHNGSGDGGAAAPSARPRDFLYVGVMTAQKYLGSRALAAQ 192
            +   G  G +  G PGS      +G  GA  P   P    + G   A    G+  L  +
Sbjct: 250 SQP--GPPGPK--GEPGSMGPRGENGVDGAPGPKGEPG---HRGTDGAAGPRGAPGLKGE 302

Query: 193 R--TWARFIPGRVEFFSSQQPPNAGQPPPP--------LPVIALPGVDDSYPPQ 236
           +  T      GR+       P   G P PP        L +   PG+D    P+
Sbjct: 303 QGDTVVIDYDGRILDALKGPPGPQGPPGPPGIPGAKGELGLPGAPGIDGEKGPK 356



 Score = 32.0 bits (71), Expect = 2.6
 Identities = 30/91 (32%), Positives = 33/91 (36%), Gaps = 14/91 (15%)

Query: 86  PPLPEAAPGITSFRSSPWQQPPPLQQRRRGRE-PEGATGLPGAPAAEGE--------PEE 136
           PP P    G    R  P    PP Q  R G   P G  G PG P  +GE        P  
Sbjct: 119 PPGPPGRRGKPGRRGDPG---PPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPGDFGPRG 175

Query: 137 EDG--GAAGQRRDGRPGSSHNGSGDGGAAAP 165
           + G  GAAG      P  +    GD G   P
Sbjct: 176 DQGQDGAAGPPGPPGPPGARGPPGDTGKDGP 206



 Score = 30.4 bits (67), Expect = 7.6
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 13/73 (17%)

Query: 77  PPARQDLQGPP-LPEA--------APGITSFRSSPWQQPPPLQQRRRGREPE----GATG 123
           PP  Q   GPP +P A        APGI   +    Q+  P +    G + E    G +G
Sbjct: 322 PPGPQGPPGPPGIPGAKGELGLPGAPGIDGEKGPKGQKGDPGEPGPAGLKGEAGEMGLSG 381

Query: 124 LPGAPAAEGEPEE 136
           LPGA   +GE  E
Sbjct: 382 LPGADGLKGEKGE 394


>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 2 [Homo sapiens]
          Length = 889

 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 42/142 (29%), Positives = 50/142 (35%), Gaps = 36/142 (25%)

Query: 49  GRSAAGPRAG-AQQPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPP 107
           GR    P A  A  P P P   P Q+Q PPP       PP P   PG      +P Q PP
Sbjct: 8   GRPGESPGATPAPGPPPPPPPAPPQQQPPPPP------PPAPPPGPG-----PAPPQHPP 56

Query: 108 PLQ-----------QRRRGREPEGATGLPGAPAA-------------EGEPEEEDGGAAG 143
             +            R R R  + + G PG P A              GEP+    G  G
Sbjct: 57  RAEALPPEAADEGGPRGRLRSRDSSCGRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEG 116

Query: 144 QRRDGRPGSSHNGSGDGGAAAP 165
             R  +   S  G+  G A  P
Sbjct: 117 PARGPKVSFSCRGAASGPAPGP 138



 Score = 33.1 bits (74), Expect = 1.2
 Identities = 41/131 (31%), Positives = 45/131 (34%), Gaps = 31/131 (23%)

Query: 43  SLCSYYGRSAAGPRAGAQQPLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGITSFRSSP 102
           S C    R   GP A     L  P+   R    P PA     GPP P + PG        
Sbjct: 737 SFCPQVARPLVGPLA-----LGSPRLVRRPPPGPAPAAAS-PGPPPPASPPGA------- 783

Query: 103 WQQPPPLQQRRRGREPEGATGLPGAPAAEGEPEEEDGGAAGQR---RDGRPGSSHNGSGD 159
                P   R     P G  GLP AP A        G A   R   R  RP S+   S  
Sbjct: 784 -----PASPRAPRTSPYG--GLPAAPLA--------GPALPARRLSRASRPLSASQPSLP 828

Query: 160 GGAAAPSARPR 170
            GA  P+A  R
Sbjct: 829 HGAPGPAASTR 839


>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
           sapiens]
          Length = 921

 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 51/184 (27%), Positives = 66/184 (35%), Gaps = 25/184 (13%)

Query: 73  EQSPPPARQDLQGPPLPEAAPGITSFRSSPWQQPPPLQQRRRGREPEGATGLPGAPAAEG 132
           ++  PP  Q   GPP P   PGI         + PP         P G  G PG P A G
Sbjct: 266 DERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPP--------GPPGPAGEPGKPGAPG 317

Query: 133 EPEEEDGGAAG-QRRDGRPGSSHNGSGDGGAAAPSARPRDFLYVGVMTAQKYLGSRALAA 191
           +P     GA G    DG PGS  +    G    P +  R F   G+       G+  L  
Sbjct: 318 KPGTP--GADGLTGPDGSPGSIGSKGQKGEPGVPGS--RGFPGRGIPGPPGPPGTAGLPG 373

Query: 192 Q--RTWARFIPGRVEFFSSQQPPNAGQPPPPLPVIAL----PGVDDSYPPQKKSFMMIKY 245
           +  R      PGR      + PP    PP P   I      P   ++ PP +  +  +  
Sbjct: 374 ELGRVGPVGDPGR------RGPPGPPGPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPG 427

Query: 246 MHDH 249
           M  H
Sbjct: 428 MRGH 431



 Score = 39.7 bits (91), Expect = 0.012
 Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 18/139 (12%)

Query: 83  LQGPPLPEAAPGITSFRSSPWQQPPPLQQRRRG-REPEGATGLPGAPAAEGEPEEEDGGA 141
           L G P P+  PG    +    Q+ PP +   +G R  EGA G+PG P  +G     D G 
Sbjct: 488 LDGEPGPQGLPGAPGDQG---QRGPPGEAGPKGDRGAEGARGIPGLPGPKG-----DTGL 539

Query: 142 AG-QRRDGRPGSSHNGSGDGGAAAPSARPRDFLYVGVMTAQKYLGSRALAAQR--TWARF 198
            G   RDG PG      G+ G   P   P D    G+       G++ +A ++  T A  
Sbjct: 540 PGVDGRDGIPGMP-GTKGEPGKPGP---PGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPG 595

Query: 199 IPGRVEFFSSQQPPNAGQP 217
            PG++   +S +P   G P
Sbjct: 596 KPGQMG--NSGKPGQQGPP 612



 Score = 36.6 bits (83), Expect = 0.11
 Identities = 47/175 (26%), Positives = 63/175 (36%), Gaps = 31/175 (17%)

Query: 83  LQGPPLPEAAPGITSFRSSPWQQPPPLQQRRRGRE----------------PEGATGLPG 126
           L G P P   PG+   R    +  P  +Q   G E                P+G+ G PG
Sbjct: 650 LPGLPGPPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPG 709

Query: 127 APAAEGEPEEEDG--GAAGQRRDGRPG-----SSHNGSGDGGAAAPSAR-PRD--FLYVG 176
            P   G PE   G  G  G R  G PG          +G  G   P  R P D     V 
Sbjct: 710 EPGLRG-PEGSRGLPGVEGPR--GPPGPRGVQGEQGATGLPGVQGPPGRAPTDQHIKQVC 766

Query: 177 VMTAQKYLGSRALAAQR--TWARFIPGRVEFFSSQQPPNAGQPPPPLPVIALPGV 229
           +   Q++    A + +R  + A  +PGR        PP     P  + +  LPG+
Sbjct: 767 MRVIQEHFAEMAASLKRPDSGATGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGI 821



 Score = 34.3 bits (77), Expect = 0.52
 Identities = 30/98 (30%), Positives = 36/98 (36%), Gaps = 20/98 (20%)

Query: 69  RPRQEQSPPPARQDLQGPPLPEAA---PGITSFRSSPWQQPPPL------------QQRR 113
           RP    +  P R    GPP P      PG    R  P  + PP             ++  
Sbjct: 783 RPDSGATGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGE 842

Query: 114 RGREPEGATGLPGAPAAEGEPEEEDGGAAGQRRDGRPG 151
           RG    G  GLPGA    G+P     G A   R+GR G
Sbjct: 843 RGPPGRGPNGLPGAIGLPGDP-----GPASYGRNGRDG 875


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,141,158
Number of Sequences: 37866
Number of extensions: 2105130
Number of successful extensions: 18866
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 825
Number of HSP's that attempted gapping in prelim test: 12502
Number of HSP's gapped (non-prelim): 4833
length of query: 882
length of database: 18,247,518
effective HSP length: 111
effective length of query: 771
effective length of database: 14,044,392
effective search space: 10828226232
effective search space used: 10828226232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.