Guide to the Human Genome
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Name: LOC644504 Sequence: fasta or formatted (142aa) NCBI GI: 239746905
Description:

PREDICTED: novel protein similar to chondroitin sulfate GalNAcT-2 (GALNACT-2)

Not currently referenced in the text

Other entries for this name:
alt mRNA {142aa} PREDICTED: novel protein similar to chondroitin sulfate GalNAcT-2...
alt mRNA {142aa} PREDICTED: novel protein similar to chondroitin sulfate GalNAcT-2...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6          8           1
 C cysteine            2.1          3           1
 D aspartate           4.9          7           1
 E glutamate           8.5         12           2
 F phenylalanine       3.5          5           1
 G glycine             7.7         11           2
 H histidine           6.3          9           1
 I isoleucine          3.5          5           1
 K lysine              6.3          9           1
 L leucine             8.5         12           1
 M methionine          6.3          9           1
 N asparagine          2.1          3           1
 P proline             3.5          5           2
 Q glutamine           2.8          4           1
 R arginine            5.6          8           1
 S serine              5.6          8           1
 T threonine           4.2          6           1
 V valine              6.3          9           1
 W tryptophan          2.8          4           1
 Y tyrosine            3.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: novel protein similar to chondroitin sul... 
LOC644504             1.000   PREDICTED: novel protein similar to chondroitin sul...
LOC644504             1.000   PREDICTED: novel protein similar to chondroitin sul...
CSGALNACT2            0.612   chondroitin sulfate N-acetylgalactosaminyltransferas...
CSGALNACT1            0.464   chondroitin sulfate N-acetylgalactosaminyltransfera...
CSGALNACT1            0.464   chondroitin sulfate N-acetylgalactosaminyltransfera...
CHSY3                 0.158   chondroitin sulfate synthase 3 
CHSY1                 0.133   chondroitin sulfate synthase 1 
CHPF                  0.047   chondroitin polymerizing factor 
GPAT2                 0.014   glycerol-3-phosphate acyltransferase 2, mitochondri...
B4GALNT3              0.014   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
GALNT14               0.014   N-acetylgalactosaminyltransferase 14 
A2ML1                 0.014   alpha-2-macroglobulin-like 1 
B4GALNT4              0.011   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
DEPDC5                0.011   DEP domain containing 5 isoform 3 
DEPDC5                0.011   DEP domain containing 5 isoform 2 
DEPDC5                0.011   DEP domain containing 5 isoform 1 
B4GALT3               0.011   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3 ...
B4GALT1               0.007   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 1...
MUC16                 0.004   mucin 16 
GALNT3                0.004   polypeptide N-acetylgalactosaminyltransferase 3 [Ho...
DMXL2                 0.004   Dmx-like 2 
B4GALT4               0.004   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4...
B4GALT4               0.004   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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