Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: B4GALNT3 Sequence: fasta or formatted (998aa) NCBI GI: 71043500
Description:

beta 1,4-N-acetylgalactosaminyltransferase-transferase 3

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         58           3
 C cysteine            0.8          8           1
 D aspartate           5.4         54           2
 E glutamate           7.4         74           7
 F phenylalanine       4.2         42           2
 G glycine             6.6         66           2
 H histidine           3.3         33           2
 I isoleucine          3.1         31           2
 K lysine              4.2         42           2
 L leucine            10.5        105           3
 M methionine          1.7         17           1
 N asparagine          3.9         39           2
 P proline             6.7         67           2
 Q glutamine           6.2         62           2
 R arginine            8.4         84           3
 S serine              6.7         67           2
 T threonine           3.2         32           2
 V valine              6.2         62           2
 W tryptophan          2.4         24           1
 Y tyrosine            3.1         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta 1,4-N-acetylgalactosaminyltransferase-transfera... 
B4GALNT4              0.417   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
CSGALNACT1            0.032   chondroitin sulfate N-acetylgalactosaminyltransfera...
CSGALNACT1            0.032   chondroitin sulfate N-acetylgalactosaminyltransfera...
CSGALNACT2            0.029   chondroitin sulfate N-acetylgalactosaminyltransferas...
CHSY1                 0.024   chondroitin sulfate synthase 1 
CHSY3                 0.021   chondroitin sulfate synthase 3 
LOC100290128          0.010   PREDICTED: hypothetical protein XP_002346712 
PHF23                 0.009   PHD finger protein 23 
RP1L1                 0.009   retinitis pigmentosa 1-like 1 
TTBK1                 0.008   tau tubulin kinase 1 
LOC100288963          0.008   PREDICTED: hypothetical protein XP_002342546 
MICALL1               0.008   molecule interacting with Rab13 
RPGR                  0.008   retinitis pigmentosa GTPase regulator isoform C [Hom...
ZNF428                0.007   zinc finger protein 428 
NEUROD2               0.007   neurogenic differentiation 2 
CHGA                  0.007   chromogranin A precursor 
LOC100289089          0.007   PREDICTED: hypothetical protein XP_002343359 
GOLIM4                0.007   golgi integral membrane protein 4 
STK11IP               0.007   LKB1 interacting protein 
SCAF1                 0.007   SR-related CTD-associated factor 1 
YTHDC1                0.007   splicing factor YT521-B isoform 2 
YTHDC1                0.007   splicing factor YT521-B isoform 1 
LOC100292723          0.006   PREDICTED: hypothetical protein 
CHD2                  0.006   chromodomain helicase DNA binding protein 2 isoform...
CHD2                  0.006   chromodomain helicase DNA binding protein 2 isoform...
PPP1R1B               0.006   protein phosphatase 1, regulatory (inhibitor) subuni...
SLC24A3               0.006   solute carrier family 24 (sodium/potassium/calcium e...
TTN                   0.006   titin isoform N2-A 
LOC100293596          0.006   PREDICTED: similar to mucin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press