Guide to the Human Genome
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Name: CSGALNACT1 Sequence: fasta or formatted (532aa) NCBI GI: 194473684
Description:

chondroitin sulfate N-acetylgalactosaminyltransferase 1

Referenced in:

Protein Glycosylation

Other entries for this name:
alt mRNA [532aa] chondroitin sulfate N-acetylgalactosaminyltransferase 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         30           2
 C cysteine            1.7          9           2
 D aspartate           4.3         23           1
 E glutamate           8.1         43           2
 F phenylalanine       5.6         30           2
 G glycine             6.6         35           2
 H histidine           3.0         16           2
 I isoleucine          4.3         23           2
 K lysine              7.3         39           2
 L leucine            10.3         55           2
 M methionine          2.6         14           3
 N asparagine          4.5         24           1
 P proline             3.9         21           2
 Q glutamine           5.3         28           2
 R arginine            6.2         33           2
 S serine              4.7         25           2
 T threonine           4.7         25           1
 V valine              6.6         35           3
 W tryptophan          1.1          6           1
 Y tyrosine            3.4         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chondroitin sulfate N-acetylgalactosaminyltransfera... 
CSGALNACT1            1.000   chondroitin sulfate N-acetylgalactosaminyltransfera...
CSGALNACT2            0.608   chondroitin sulfate N-acetylgalactosaminyltransferas...
CHSY3                 0.171   chondroitin sulfate synthase 3 
CHSY1                 0.160   chondroitin sulfate synthase 1 
LOC644504             0.122   PREDICTED: novel protein similar to chondroitin sul...
LOC644504             0.122   PREDICTED: novel protein similar to chondroitin sul...
LOC644504             0.122   PREDICTED: novel protein similar to chondroitin sul...
B4GALNT3              0.062   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
B4GALNT4              0.057   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
CHPF                  0.033   chondroitin polymerizing factor 
CHPF2                 0.023   chondroitin polymerizing factor 2 
MSN                   0.011   moesin 
ROCK2                 0.009   Rho-associated, coiled-coil containing protein kinas...
EZR                   0.009   ezrin 
EZR                   0.009   ezrin 
ARHGEF2               0.009   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF2               0.009   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF2               0.009   Rho/Rac guanine nucleotide exchange factor 2 isoofor...
B4GALT2               0.009   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2...
B4GALT2               0.009   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2 ...
ROCK1                 0.008   Rho-associated, coiled-coil containing protein kinase...
TPR                   0.008   nuclear pore complex-associated protein TPR 
NUMA1                 0.008   nuclear mitotic apparatus protein 1 
CDC42BPG              0.008   CDC42 binding protein kinase gamma (DMPK-like) [Hom...
PPL                   0.008   periplakin 
C10orf92              0.008   hypothetical protein LOC54777 
IL32                  0.008   interleukin 32 isoform B 
IL32                  0.008   interleukin 32 isoform D 
IL32                  0.008   interleukin 32 isoform C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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