RFNG 35477

Name: RFNG	Sequence: fasta or formatted (331aa)		NCBI GI: 74271816
Description: radical fringe		Referenced in: Protein Glycosylation Notch Pathway
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.4 31 3 C cysteine 3.0 10 2 D aspartate 5.4 18 3 E glutamate 3.0 10 1 F phenylalanine 3.9 13 1 G glycine 6.6 22 2 H histidine 3.3 11 1 I isoleucine 2.4 8 1 K lysine 2.7 9 1 L leucine 13.0 43 4 M methionine 1.2 4 1 N asparagine 2.7 9 1 P proline 8.8 29 2 Q glutamine 3.9 13 2 R arginine 8.8 29 1 S serine 7.3 24 2 T threonine 6.0 20 2 V valine 5.4 18 2 W tryptophan 1.5 5 1 Y tyrosine 1.5 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 radical fringe LFNG 0.543 lunatic fringe isoform a LFNG 0.490 lunatic fringe isoform b MFNG 0.467 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransfer... B3GALTL 0.071 beta 1,3-galactosyltransferase-like CHSY3 0.038 chondroitin sulfate synthase 3 CHPF2 0.032 chondroitin polymerizing factor 2 CHSY1 0.030 chondroitin sulfate synthase 1 C1GALT1 0.024 core 1 synthase, glycoprotein-N-acetylgalactosamine 3... UBE2O 0.023 ubiquitin-conjugating enzyme E2O CDKN1C 0.021 cyclin-dependent kinase inhibitor 1C isoform b [Hom... CDKN1C 0.021 cyclin-dependent kinase inhibitor 1C isoform b [Hom... CDKN1C 0.021 cyclin-dependent kinase inhibitor 1C isoform a RANBP9 0.020 RAN binding protein 9 TRRAP 0.018 transformation/transcription domain-associated protei... PSD4 0.018 pleckstrin and Sec7 domain containing 4 LOC100291632 0.017 PREDICTED: hypothetical protein XP_002344527 LOC100288471 0.017 PREDICTED: hypothetical protein LOC100288471 0.017 PREDICTED: hypothetical protein XP_002343034 DSCAML1 0.017 Down syndrome cell adhesion molecule like 1 UTF1 0.015 undifferentiated embryonic cell transcription factor... SFRS15 0.015 splicing factor, arginine/serine-rich 15 isoform 3 ... SFRS15 0.015 splicing factor, arginine/serine-rich 15 isoform 2 ... SFRS15 0.015 splicing factor, arginine/serine-rich 15 isoform 1 [... DHX37 0.015 DEAH (Asp-Glu-Ala-His) box polypeptide 37 RYK 0.015 RYK receptor-like tyrosine kinase isoform 2 RYK 0.015 RYK receptor-like tyrosine kinase isoform 1 MYL4 0.015 atrial/embryonic alkali myosin light chain ZC3H4 0.015 zinc finger CCCH-type containing 4 MYL4 0.015 atrial/embryonic alkali myosin light chain Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.