Guide to the Human Genome
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Name: DEFB133 Sequence: fasta or formatted (61aa) NCBI GI: 239748864
Description:

PREDICTED: defensin, beta 133

Referenced in:

Additional Host Defense Functions

Other entries for this name:
alt mRNA [61aa] PREDICTED: beta-defensin 133
alt mRNA [61aa] PREDICTED: defensin, beta 133
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9          3           1
 C cysteine            9.8          6           1
 D aspartate           3.3          2           1
 E glutamate           3.3          2           1
 F phenylalanine      13.1          8           3
 G glycine             3.3          2           1
 H histidine           4.9          3           1
 I isoleucine          6.6          4           1
 K lysine              9.8          6           1
 L leucine             6.6          4           1
 M methionine          6.6          4           1
 N asparagine          3.3          2           1
 P proline             3.3          2           1
 Q glutamine           0.0          0           0
 R arginine            4.9          3           1
 S serine              1.6          1           1
 T threonine           4.9          3           1
 V valine              6.6          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: defensin, beta 133 
DEFB133               1.000   PREDICTED: defensin, beta 133 
DEFB133               1.000   PREDICTED: beta-defensin 133 
DEFB105A              0.134   defensin, beta 105A precursor 
DEFB110               0.134   beta-defensin 110 
DEFB105B              0.134   defensin, beta 105B precursor 
DEFB111               0.125   beta-defensin 111 
DEFB106A              0.062   defensin, beta 106A precursor 
DEFB106B              0.062   defensin, beta 106B precursor 
LOC100133267          0.054   PREDICTED: similar to beta-defensin 130 
DEFB130               0.054   beta-defensin 130 
LOC729523             0.054   PREDICTED: similar to beta-defensin 130 
LOC729523             0.054   PREDICTED: similar to beta-defensin 130 
LOC729523             0.054   PREDICTED: similar to beta-defensin 130 
DEFB112               0.054   beta-defensin 112 
LOC100133128          0.045   PREDICTED: hypothetical protein 
DEFB108B              0.045   beta-defensin 108B 
DEFB114               0.045   beta-defensin 114 
DEFB107B              0.036   defensin, beta 107B precursor 
DEFB107A              0.036   defensin, beta 107A precursor 
DEFB134               0.027   beta-defensin 134 
LOC100133128          0.027   PREDICTED: hypothetical protein 
LOC100133128          0.027   PREDICTED: hypothetical protein 
CXorf64               0.009   hypothetical protein LOC100130613 
FBXO5                 0.009   F-box only protein 5 isoform b 
FBXO5                 0.009   F-box only protein 5 isoform a 
DEFB117               0.009   PREDICTED: defensin, beta 117 
DEFB117               0.009   PREDICTED: defensin, beta 117 
DEFB117               0.009   PREDICTED: defensin, beta 117 
DEFB123               0.009   defensin, beta 123 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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