Guide to the Human Genome
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Name: CSMD3 Sequence: fasta or formatted (3667aa) NCBI GI: 38045890
Description:

CUB and Sushi multiple domains 3 isoform 2

Referenced in:

Additional Interaction Domain Families

Other entries for this name:
alt prot [3538aa] CUB and Sushi multiple domains 3 isoform 3
alt prot [3707aa] CUB and Sushi multiple domains 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0        145           2
 C cysteine            3.9        143           1
 D aspartate           4.5        166           2
 E glutamate           4.7        171           3
 F phenylalanine       5.2        190           2
 G glycine            10.0        368           3
 H histidine           2.6         97           2
 I isoleucine          5.9        218           2
 K lysine              2.8        102           2
 L leucine             6.8        250           3
 M methionine          1.2         44           1
 N asparagine          5.5        201           3
 P proline             6.9        254           4
 Q glutamine           3.9        142           2
 R arginine            3.9        143           3
 S serine              9.9        362           3
 T threonine           6.9        254           3
 V valine              5.7        210           3
 W tryptophan          1.6         58           2
 Y tyrosine            4.1        149           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.994   CUB and Sushi multiple domains 3 isoform 1 
CSMD3                 0.827   CUB and Sushi multiple domains 3 isoform 3 
CSMD1                 0.592   CUB and Sushi multiple domains 1 
CSMD2                 0.476   CUB and Sushi multiple domains 2 
SVEP1                 0.064   polydom 
CR1                   0.050   complement receptor 1 isoform S precursor 
CR1                   0.048   complement receptor 1 isoform F precursor 
CR2                   0.042   complement component (3d/Epstein Barr virus) recepto...
CR2                   0.041   complement component (3d/Epstein Barr virus) recepto...
SELP                  0.030   selectin P precursor 
SEZ6L                 0.027   seizure related 6 homolog (mouse)-like precursor [Ho...
SEZ6                  0.027   seizure related 6 homolog isoform 2 
SEZ6                  0.027   seizure related 6 homolog isoform 1 
SEZ6L2                0.026   seizure related 6 homolog (mouse)-like 2 isoform 3 ...
SEZ6L2                0.026   seizure related 6 homolog (mouse)-like 2 isoform 2 ...
SEZ6L2                0.026   seizure related 6 homolog (mouse)-like 2 isoform 1 [H...
TLL1                  0.025   tolloid-like 1 
TLL2                  0.024   tolloid-like 2 
SELE                  0.023   selectin E precursor 
CR1L                  0.023   complement component (3b/4b) receptor 1-like 
BMP1                  0.023   bone morphogenetic protein 1 isoform 3 precursor [Hom...
SEZ6L2                0.022   seizure related 6 homolog (mouse)-like 2 isoform 4 ...
CFH                   0.022   complement factor H isoform a precursor 
C4BPA                 0.020   complement component 4 binding protein, alpha chain p...
BMP1                  0.016   bone morphogenetic protein 1 isoform 1 precursor [Hom...
BMP1                  0.016   bone morphogenetic protein 1 isoform 2 precursor [Hom...
CFH                   0.014   complement factor H isoform b precursor 
MASP2                 0.013   mannan-binding lectin serine protease 2 isoform 1 pr...
MFRP                  0.013   membrane frizzled-related protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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