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Search of human proteins with 72534682
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|72534682 RNA binding motif protein 9 isoform 1 [Homo
sapiens]
(380 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens] 772 0.0
gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens] 758 0.0
gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens] 757 0.0
gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens] 753 0.0
gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens] 610 e-175
gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens] 592 e-169
gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 461 e-130
gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 461 e-130
gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens] 457 e-129
gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens] 453 e-127
gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens] 443 e-124
gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens] 392 e-109
gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens] 389 e-108
gi|189181654 deleted in azoospermia [Homo sapiens] 64 2e-10
gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens] 64 2e-10
gi|221139802 RNA binding motif protein 24 isoform 1 [Homo sapiens] 61 2e-09
gi|62244004 modulator of estrogen induced transcription isoform ... 60 3e-09
gi|63176611 modulator of estrogen induced transcription isoform ... 60 3e-09
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 60 4e-09
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 60 4e-09
gi|37574731 boule isoform 1 [Homo sapiens] 59 6e-09
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 59 6e-09
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 59 7e-09
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 59 7e-09
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 59 7e-09
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 59 9e-09
gi|14719414 boule isoform 2 [Homo sapiens] 58 1e-08
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 58 1e-08
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 57 2e-08
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 57 2e-08
>gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens]
Length = 380
Score = 772 bits (1993), Expect = 0.0
Identities = 380/380 (100%), Positives = 380/380 (100%)
Query: 1 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT 60
MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
Sbjct: 1 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT 60
Query: 61 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF
Sbjct: 61 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Query: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
Query: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR 240
EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR 240
Query: 241 GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV 300
GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV
Sbjct: 241 GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV 300
Query: 301 VYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAAS 360
VYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAAS
Sbjct: 301 VYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAAS 360
Query: 361 YGVGAVASLYRGGYSRFAPY 380
YGVGAVASLYRGGYSRFAPY
Sbjct: 361 YGVGAVASLYRGGYSRFAPY 380
>gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens]
Length = 376
Score = 758 bits (1958), Expect = 0.0
Identities = 375/380 (98%), Positives = 376/380 (98%), Gaps = 4/380 (1%)
Query: 1 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT 60
MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
Sbjct: 1 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT 60
Query: 61 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF
Sbjct: 61 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Query: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
Query: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR 240
EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR 240
Query: 241 GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV 300
GGINTYIPLI +PGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV
Sbjct: 241 GGINTYIPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV 296
Query: 301 VYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAAS 360
VYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAAS
Sbjct: 297 VYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAAS 356
Query: 361 YGVGAVASLYRGGYSRFAPY 380
YGVGAVASLYRGGYSRFAPY
Sbjct: 357 YGVGAVASLYRGGYSRFAPY 376
>gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens]
Length = 450
Score = 757 bits (1955), Expect = 0.0
Identities = 372/373 (99%), Positives = 373/373 (100%)
Query: 8 TQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 67
+QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA
Sbjct: 78 SQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 137
Query: 68 HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL 127
HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL
Sbjct: 138 HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL 197
Query: 128 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 187
RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA
Sbjct: 198 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 257
Query: 188 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 247
RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI
Sbjct: 258 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 317
Query: 248 PLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGFY 307
PLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGFY
Sbjct: 318 PLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGFY 377
Query: 308 GADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVGAVA 367
GADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVGAVA
Sbjct: 378 GADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVGAVA 437
Query: 368 SLYRGGYSRFAPY 380
SLYRGGYSRFAPY
Sbjct: 438 SLYRGGYSRFAPY 450
>gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens]
Length = 451
Score = 753 bits (1943), Expect = 0.0
Identities = 372/374 (99%), Positives = 373/374 (99%), Gaps = 1/374 (0%)
Query: 8 TQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 67
+QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA
Sbjct: 78 SQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 137
Query: 68 HGEQSSNSPSTQNGSLT-TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPD 126
HGEQSSNSPSTQNGSLT TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPD
Sbjct: 138 HGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPD 197
Query: 127 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 186
LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT
Sbjct: 198 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 257
Query: 187 ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTY 246
ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTY
Sbjct: 258 ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTY 317
Query: 247 IPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGF 306
IPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGF
Sbjct: 318 IPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGF 377
Query: 307 YGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVGAV 366
YGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVGAV
Sbjct: 378 YGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVGAV 437
Query: 367 ASLYRGGYSRFAPY 380
ASLYRGGYSRFAPY
Sbjct: 438 ASLYRGGYSRFAPY 451
>gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens]
Length = 370
Score = 610 bits (1574), Expect = e-175
Identities = 301/303 (99%), Positives = 301/303 (99%)
Query: 1 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT 60
MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
Sbjct: 1 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT 60
Query: 61 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF
Sbjct: 61 LYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Query: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
Query: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR 240
EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR
Sbjct: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR 240
Query: 241 GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV 300
GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV
Sbjct: 241 GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV 300
Query: 301 VYQ 303
Q
Sbjct: 301 DMQ 303
>gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens]
Length = 367
Score = 592 bits (1527), Expect = e-169
Identities = 296/304 (97%), Positives = 297/304 (97%), Gaps = 5/304 (1%)
Query: 1 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT 60
MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT
Sbjct: 1 MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLT 60
Query: 61 LYGSTQAHGEQSSNSPSTQNGSLT-TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIP 119
LYGSTQAHGEQSSNSPSTQNGSLT TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIP
Sbjct: 61 LYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIP 120
Query: 120 FRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 179
FRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK
Sbjct: 121 FRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 180
Query: 180 IEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSG 239
IEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSG
Sbjct: 181 IEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSG 240
Query: 240 RGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPG 299
RGGINTYIPLI +PGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPG
Sbjct: 241 RGGINTYIPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPG 296
Query: 300 VVYQ 303
V Q
Sbjct: 297 VDMQ 300
>gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 461 bits (1186), Expect = e-130
Identities = 260/410 (63%), Positives = 280/410 (68%), Gaps = 59/410 (14%)
Query: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
Query: 64 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Query: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
Query: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
Query: 239 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 297
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 247 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 295
Query: 298 PGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALA 356
GVVYQDGFYGAD+YGGYAAYRYAQP AT AAAYSD YGRVY ADPY HALA
Sbjct: 296 GGVVYQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALA 347
Query: 357 PAASYGVGAV--------------------------ASLYRGGYSRFAPY 380
PA +YGVGA+ AS+YRGGY+RFAPY
Sbjct: 348 PAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
>gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 461 bits (1186), Expect = e-130
Identities = 260/410 (63%), Positives = 280/410 (68%), Gaps = 59/410 (14%)
Query: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
Query: 64 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Query: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
Query: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
Query: 239 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 297
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 247 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 295
Query: 298 PGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALA 356
GVVYQDGFYGAD+YGGYAAYRYAQP AT AAAYSD YGRVY ADPY HALA
Sbjct: 296 GGVVYQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALA 347
Query: 357 PAASYGVGAV--------------------------ASLYRGGYSRFAPY 380
PA +YGVGA+ AS+YRGGY+RFAPY
Sbjct: 348 PAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
>gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]
Length = 392
Score = 457 bits (1177), Expect = e-129
Identities = 256/385 (66%), Positives = 275/385 (71%), Gaps = 34/385 (8%)
Query: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
QGNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 29 QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 64 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
Query: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
Query: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
Query: 239 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 297
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 267 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 315
Query: 298 PGVVYQDGFYGAD-LYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HAL 355
GVVYQ+ YG L GGYAAYRYAQP AT AAAYSD YGRVY ADPY HAL
Sbjct: 316 GGVVYQEPVYGNKLLQGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHAL 367
Query: 356 APAASYGVGAVASLYRGGYSRFAPY 380
APA +YGVGA+AS+YRGGY+RFAPY
Sbjct: 368 APAPTYGVGAMASIYRGGYNRFAPY 392
>gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]
Length = 370
Score = 453 bits (1166), Expect = e-127
Identities = 256/408 (62%), Positives = 270/408 (66%), Gaps = 82/408 (20%)
Query: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
Query: 64 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Query: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
Query: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR 240
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA
Sbjct: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYA--------------------- 225
Query: 241 GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPG 299
VPGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY G
Sbjct: 226 --------------VPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGG 270
Query: 300 VVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALAPA 358
VVYQDGFYGAD+YGGYAAYRYAQP AT AAAYSD YGRVY ADPY HALAPA
Sbjct: 271 VVYQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALAPA 322
Query: 359 ASYGVGAV--------------------------ASLYRGGYSRFAPY 380
+YGVGA+ AS+YRGGY+RFAPY
Sbjct: 323 PTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 370
>gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]
Length = 418
Score = 443 bits (1140), Expect = e-124
Identities = 256/411 (62%), Positives = 275/411 (66%), Gaps = 60/411 (14%)
Query: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
QGNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 29 QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 64 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
Query: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
Query: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
Query: 239 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 297
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 267 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 315
Query: 298 PGVVYQDGFYGAD-LYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HAL 355
GVVYQ+ YG L GGYAAYRYAQP AT AAAYSD YGRVY ADPY HAL
Sbjct: 316 GGVVYQEPVYGNKLLQGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHAL 367
Query: 356 APAASYGVGAV--------------------------ASLYRGGYSRFAPY 380
APA +YGVGA+ AS+YRGGY+RFAPY
Sbjct: 368 APAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 418
>gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]
Length = 395
Score = 392 bits (1008), Expect = e-109
Identities = 226/353 (64%), Positives = 242/353 (68%), Gaps = 33/353 (9%)
Query: 9 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 63
QGNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 29 QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 64 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 120
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
Query: 121 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
Query: 181 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 238
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
Query: 239 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 297
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 267 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 315
Query: 298 PGVVYQDGFYGAD-LYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTA 349
GVVYQ+ YG L GGYAAYRYAQP AT AAAYSD V+ A
Sbjct: 316 GGVVYQEPVYGNKLLQGGYAAYRYAQPTPAT--------AAAYSDRNQFVFVA 360
>gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]
Length = 312
Score = 389 bits (1000), Expect = e-108
Identities = 219/360 (60%), Positives = 238/360 (66%), Gaps = 62/360 (17%)
Query: 21 MVQPFTTIPFPPPPQNGIPTEYGVPH---TQDYAGQTG---EHNLTLYGSTQAHGEQSSN 74
M QP+ +PPPPQNGIP EY P TQDY+GQT EH +TLY Q H EQ +
Sbjct: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
Query: 75 SPSTQN--GSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQ 129
STQ G+ T T+ AQTD SQ + K PKRLHVSNIPFRFRDPDLRQ
Sbjct: 61 EASTQPIAGTQTVPQTDEAAQTD---SQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQ 117
Query: 130 MFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 189
MFGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARV
Sbjct: 118 MFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV 177
Query: 190 MTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYIPL 249
MTNKK PY NGWKL+PVVGAVYGPE YA
Sbjct: 178 MTNKKTGNPYTNGWKLNPVVGAVYGPEFYA------------------------------ 207
Query: 250 ISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAV-PPTAIPAYPGVVYQDGFYG 308
V GFPYPT TA A+RGAHLRGRGR VY RA PP IP Y VVYQDGFYG
Sbjct: 208 -----VTGFPYPTTG-TAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYG 261
Query: 309 ADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVY-TADPY-HALAPAASYGVGAV 366
A++YGGYAAYRYAQP AAAAAAYSD YGRVY ADPY H + PAA+Y +G +
Sbjct: 262 AEIYGGYAAYRYAQP---------AAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM 312
>gi|189181654 deleted in azoospermia [Homo sapiens]
Length = 744
Score = 64.3 bits (155), Expect = 2e-10
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Query: 22 VQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNG 81
VQP + PPPP + P+T+ Y + +T TQ QS+ +P T N
Sbjct: 124 VQPRPLVVNPPPPPQ-FQNVWRNPNTETYL----QPQITPNPVTQH--VQSAANPETPNS 176
Query: 82 SLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE 141
+++ E Q+ + +Q E K P + V I R + ++ FG++G + +V+
Sbjct: 177 TISREASTQSSSAAA-SQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVK 235
Query: 142 IIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATARVMTNKKMVTP 198
II N G SKG+GFV+F N D +K+ G+ + G+K+++ A + + V P
Sbjct: 236 IITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQP 291
Score = 64.3 bits (155), Expect = 2e-10
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Query: 22 VQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNG 81
VQP + PPPP + P+T+ Y + +T TQ QS+ +P T N
Sbjct: 289 VQPRPLVVNPPPPPQ-FQNVWRNPNTETYL----QPQITPNPVTQH--VQSAANPETPNS 341
Query: 82 SLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE 141
+++ E Q+ + +Q E K P + V I R + ++ FG++G + +V+
Sbjct: 342 TISREASTQSSSAAA-SQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVK 400
Query: 142 IIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATARVMTNKKMVTP 198
II N G SKG+GFV+F N D +K+ G+ + G+K+++ A + + V P
Sbjct: 401 IITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQP 456
Score = 57.0 bits (136), Expect = 3e-08
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 72 SSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMF 131
S+ +P T N +++ E Q+ + +Q E K P + V I R + ++ F
Sbjct: 2 SAANPETPNSTISREASTQSSSAAA-SQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCF 60
Query: 132 GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR 188
G++G + +V+II N G SKG+GFV+F N D +K+ G+ + G+K+++ A +
Sbjct: 61 GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRK 116
Query: 189 VMTNKKMVTP 198
+ V P
Sbjct: 117 QKLCARHVQP 126
>gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]
Length = 579
Score = 64.3 bits (155), Expect = 2e-10
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Query: 22 VQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNG 81
VQP + PPPP + P+T+ Y + +T TQ QS+ +P T N
Sbjct: 124 VQPRPLVVNPPPPPQ-FQNVWRNPNTETYL----QPQITPNPVTQH--VQSAANPETPNS 176
Query: 82 SLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE 141
+++ E Q+ + +Q E K P + V I R + ++ FG++G + +V+
Sbjct: 177 TISREASTQSSSAAA-SQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVK 235
Query: 142 IIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATARVMTNKKMVTP 198
II N G SKG+GFV+F N D +K+ G+ + G+K+++ A + + V P
Sbjct: 236 IITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQP 291
Score = 57.0 bits (136), Expect = 3e-08
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 72 SSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMF 131
S+ +P T N +++ E Q+ + +Q E K P + V I R + ++ F
Sbjct: 2 SAANPETPNSTISREASTQSSSAAA-SQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCF 60
Query: 132 GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR 188
G++G + +V+II N G SKG+GFV+F N D +K+ G+ + G+K+++ A +
Sbjct: 61 GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRK 116
Query: 189 VMTNKKMVTP 198
+ V P
Sbjct: 117 QKLCARHVQP 126
>gi|221139802 RNA binding motif protein 24 isoform 1 [Homo sapiens]
Length = 236
Score = 60.8 bits (146), Expect = 2e-09
Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 29/242 (11%)
Query: 104 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSA 161
++ +T ++ V +P+ D LR+ F FG+I + +I + + S+G+GFVT + A
Sbjct: 4 TQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRA 63
Query: 162 DADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAAS 221
A+RA K +++GRK VN A + +++ P G +G + +
Sbjct: 64 AAERAC-KDPNPIIDGRKANVN--LAYLGAKPRIMQP-----------GFAFGVQQLHPA 109
Query: 222 SFQADVSLGNDAAVPLSG-RGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGR 280
Q + P + + G+ IP + P T AA+
Sbjct: 110 LIQRPFGIPAHYVYPQAFVQPGV--VIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAA 167
Query: 281 TVYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYR---YAQPATATAATAAAAAAA 337
A P A PA G V G+ GYA + A P TA AA AAAAAAA
Sbjct: 168 AAAAAYDQYPYAASPAAAGYVTAGGY-------GYAVQQPITAAAPGTAAAAAAAAAAAA 220
Query: 338 AY 339
A+
Sbjct: 221 AF 222
Score = 29.3 bits (64), Expect = 6.1
Identities = 23/47 (48%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 315 YAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASY 361
Y Y A A +AA AAAAAAAAY D Y PY A AA Y
Sbjct: 149 YIDYTGAAYAQYSAAAAAAAAAAAY-DQY-------PYAASPAAAGY 187
>gi|62244004 modulator of estrogen induced transcription isoform b
[Homo sapiens]
Length = 1016
Score = 60.1 bits (144), Expect = 3e-09
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 64 STQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFR 123
ST A G+ S+S +++ +++ + T S+ S ST K + VS + +
Sbjct: 326 STGASGQAKSSSKESKDSKTSSKD------DKGSTSSTSGSSGSST-KNIWVSGLSSNTK 378
Query: 124 DPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 181
DL+ +FG++GK+L +++ N R G+K +G VT +S + R LH T + G+ I
Sbjct: 379 AADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAHLHRTELHGQLIS 438
Query: 182 V 182
V
Sbjct: 439 V 439
>gi|63176611 modulator of estrogen induced transcription isoform a
[Homo sapiens]
Length = 1034
Score = 60.1 bits (144), Expect = 3e-09
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 64 STQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFR 123
ST A G+ S+S +++ +++ + T S+ S ST K + VS + +
Sbjct: 344 STGASGQAKSSSKESKDSKTSSKD------DKGSTSSTSGSSGSST-KNIWVSGLSSNTK 396
Query: 124 DPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 181
DL+ +FG++GK+L +++ N R G+K +G VT +S + R LH T + G+ I
Sbjct: 397 AADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAHLHRTELHGQLIS 456
Query: 182 V 182
V
Sbjct: 457 V 457
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 59.7 bits (143), Expect = 4e-09
Identities = 32/102 (31%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 89 AQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ER 147
+Q + ++ ++ + + P RL+V ++ F + LR +F FG+I ++++ + E
Sbjct: 228 SQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSET 287
Query: 148 G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 188
G SKG+GF+TF +S A +A E+L+G + GR ++V + T R
Sbjct: 288 GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 59.7 bits (143), Expect = 4e-09
Identities = 32/102 (31%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 89 AQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ER 147
+Q + ++ ++ + + P RL+V ++ F + LR +F FG+I ++++ + E
Sbjct: 228 SQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSET 287
Query: 148 G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 188
G SKG+GF+TF +S A +A E+L+G + GR ++V + T R
Sbjct: 288 GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
>gi|37574731 boule isoform 1 [Homo sapiens]
Length = 295
Score = 59.3 bits (142), Expect = 6e-09
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 19/150 (12%)
Query: 83 LTTEGGAQTDGQQSQTQSSENSESKST----------------PKRLHVSNIPFRFRDPD 126
+ TE G QT Q S + S P R+ V I F+ + D
Sbjct: 1 METESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESD 60
Query: 127 LRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 185
LR+ F Q+G + +V+I+ + G SKG+GFVTFE DA + ++ + +K+ + A
Sbjct: 61 LRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120
Query: 186 TAR--VMTNKKMVTPYANGWKLSPVVGAVY 213
+ V + + P A L+ G Y
Sbjct: 121 IRKQQVGIPRSSIMPAAGTMYLTTSTGYPY 150
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 59.3 bits (142), Expect = 6e-09
Identities = 31/96 (32%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 95 QSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFG 153
+ + ++ + +K P +++ N D L+ +FG+FG L V+++ +E G SKGFG
Sbjct: 176 RKEREAELGARAKEFPN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFG 234
Query: 154 FVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 189
FV+FE DA +A ++++G + G++I V A +V
Sbjct: 235 FVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Score = 55.8 bits (133), Expect = 6e-08
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 107 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 166
KS + V N+ + L FG IL ++ +E GSKG+GFV FE A+RA
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERA 154
Query: 167 REKLHGTVVEGRKIEVNNATAR 188
+K++G ++ GRK+ V +R
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSR 176
Score = 47.8 bits (112), Expect = 2e-05
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 90 QTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS 149
QT+ +++ Q ++ ++ L+V N+ D LR+ F FG I +++ S
Sbjct: 273 QTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRS 332
Query: 150 KGFGFVTFENSADADRAREKLHGTVVEGRKIEV 182
KGFGFV F + +A +A +++G +V + + V
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 58.9 bits (141), Expect = 7e-09
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 113 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 171
+++ N D L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 172 GTVVEGRKIEVNNATARV 189
G + G+ I V A +V
Sbjct: 253 GKEISGKIIFVGRAQKKV 270
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 107 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 166
KS + + N+ + L F FG IL +++ +E GSKG+ FV FE AD+A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 167 REKLHGTVVEGRKIEVNNATAR 188
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 48.1 bits (113), Expect = 1e-05
Identities = 25/93 (26%), Positives = 47/93 (50%)
Query: 90 QTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS 149
Q + ++ Q + S+ L++ N+ D LR+ F FG I +++ + S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 150 KGFGFVTFENSADADRAREKLHGTVVEGRKIEV 182
KGFGFV F + +A +A +++G +V + + V
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 37.4 bits (85), Expect = 0.023
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 103 NSESKSTPKR-LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFEN 159
N+ + S P L+V ++ + L + F G +L + + + R S G+ +V F+
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 160 SADADRAREKLHGTVVEGRKIEV 182
ADA+RA + ++ V++G+ I +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI 84
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 58.9 bits (141), Expect = 7e-09
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 113 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 171
+++ N D L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 172 GTVVEGRKIEVNNATARV 189
G + G+ I V A +V
Sbjct: 253 GKEISGKIIFVGRAQKKV 270
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 107 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 166
KS + + N+ + L F FG IL +++ +E GSKG+ FV FE AD+A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 167 REKLHGTVVEGRKIEVNNATAR 188
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 48.1 bits (113), Expect = 1e-05
Identities = 25/93 (26%), Positives = 47/93 (50%)
Query: 90 QTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS 149
Q + ++ Q + S+ L++ N+ D LR+ F FG I +++ + S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 150 KGFGFVTFENSADADRAREKLHGTVVEGRKIEV 182
KGFGFV F + +A +A +++G +V + + V
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 37.4 bits (85), Expect = 0.023
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 103 NSESKSTPKR-LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFEN 159
N+ + S P L+V ++ + L + F G +L + + + R S G+ +V F+
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 160 SADADRAREKLHGTVVEGRKIEV 182
ADA+RA + ++ V++G+ I +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI 84
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 58.9 bits (141), Expect = 7e-09
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 113 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 171
+++ N D L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 172 GTVVEGRKIEVNNATARV 189
G + G+ I V A +V
Sbjct: 253 GKEISGKIIFVGRAQKKV 270
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 107 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 166
KS + + N+ + L F FG IL +++ +E GSKG+ FV FE AD+A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 167 REKLHGTVVEGRKIEVNNATAR 188
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 48.1 bits (113), Expect = 1e-05
Identities = 25/93 (26%), Positives = 47/93 (50%)
Query: 90 QTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS 149
Q + ++ Q + S+ L++ N+ D LR+ F FG I +++ + S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 150 KGFGFVTFENSADADRAREKLHGTVVEGRKIEV 182
KGFGFV F + +A +A +++G +V + + V
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 37.4 bits (85), Expect = 0.023
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 103 NSESKSTPKR-LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFEN 159
N+ + S P L+V ++ + L + F G +L + + + R S G+ +V F+
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 160 SADADRAREKLHGTVVEGRKIEV 182
ADA+RA + ++ V++G+ I +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI 84
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 58.5 bits (140), Expect = 9e-09
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 113 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 171
+++ N D L+ +FG+FG L V+++ +E G SKGFGFV+FE DA +A ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 172 GTVVEGRKIEVNNATARV 189
G + G++I V A +V
Sbjct: 253 GKELNGKQIYVGRAQKKV 270
Score = 57.0 bits (136), Expect = 3e-08
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 107 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 166
KS + + N+ + L F FG IL +++ +E GSKG+GFV FE A+RA
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 167 REKLHGTVVEGRKIEVNNATAR 188
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 47.0 bits (110), Expect = 3e-05
Identities = 26/93 (27%), Positives = 48/93 (51%)
Query: 90 QTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS 149
QT+ ++ Q ++ ++ L+V N+ D LR+ F FG I +++ S
Sbjct: 273 QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 150 KGFGFVTFENSADADRAREKLHGTVVEGRKIEV 182
KGFGFV F + +A +A +++G +V + + V
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 35.8 bits (81), Expect = 0.066
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 113 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 170
L+V ++ + L + F G IL + + + R S G+ +V F+ ADA+RA + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 171 HGTVVEGRKIEV 182
+ V++G+ + +
Sbjct: 73 NFDVIKGKPVRI 84
>gi|14719414 boule isoform 2 [Homo sapiens]
Length = 283
Score = 58.2 bits (139), Expect = 1e-08
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 110 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRARE 168
P R+ V I F+ + DLR+ F Q+G + +V+I+ + G SKG+GFVTFE DA + +
Sbjct: 32 PNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQ 91
Query: 169 KLHGTVVEGRKIEVNNATAR--VMTNKKMVTPYANGWKLSPVVGAVY 213
+ + +K+ + A + V + + P A L+ G Y
Sbjct: 92 EAEKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMYLTTSTGYPY 138
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 58.2 bits (139), Expect = 1e-08
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 16/97 (16%)
Query: 103 NSESKSTPKRLHVSN--------------IPFRFRDPDLRQMFGQFGKILDVEIIFNE-- 146
+S S + +R HV N + + DLR++F ++G I DV I++++
Sbjct: 96 HSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS 155
Query: 147 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 183
R S+GF FV FEN DA A+E+ +G ++GR+I V+
Sbjct: 156 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 57.4 bits (137), Expect = 2e-08
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 69 GEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLR 128
G P T G + E +G Q +S +NS+S ++ V IP + +LR
Sbjct: 77 GRNIDPKPCTPRG-MQPERTRPKEGWQKGPRS-DNSKSN----KIFVGGIPHNCGETELR 130
Query: 129 QMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 186
+ F +FG + +V +I++ ++ +GFGF+TFE+ D+A +H + G+K+EV A
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVEVKRAE 189
Query: 187 ARVMTNKKMVTPYANGWKLSPVVGAVYG 214
R ++ P A+ W V A G
Sbjct: 190 PRDSKSQAPGQPGASQWGSRVVPNAANG 217
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 57.4 bits (137), Expect = 2e-08
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 69 GEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLR 128
G P T G + E +G Q +S +NS+S ++ V IP + +LR
Sbjct: 77 GRNIDPKPCTPRG-MQPERTRPKEGWQKGPRS-DNSKSN----KIFVGGIPHNCGETELR 130
Query: 129 QMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 186
+ F +FG + +V +I++ ++ +GFGF+TFE+ D+A +H + G+K+EV A
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVEVKRAE 189
Query: 187 ARVMTNKKMVTPYANGWKLSPVVGAVYG 214
R ++ P A+ W V A G
Sbjct: 190 PRDSKSQAPGQPGASQWGSRVVPNAANG 217
Score = 32.0 bits (71), Expect = 0.95
Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 10 GNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ-DYA-GQTGEHNLTLYGSTQA 67
G P TP A + FPPPP P P Q D+ GQ + L G Q
Sbjct: 308 GVPPPPATPGA-----APLAFPPPPSQAAPDMSKPPTAQPDFPYGQYAGYGQDLSGFGQG 362
Query: 68 HGEQSSNSPSTQNGSLTTEGGAQTDG 93
+ S PS S+ GG G
Sbjct: 363 FSDPSQQPPSYGGPSVPGSGGPPAGG 388
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,922,466
Number of Sequences: 37866
Number of extensions: 797297
Number of successful extensions: 4717
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 228
Number of HSP's that attempted gapping in prelim test: 3577
Number of HSP's gapped (non-prelim): 956
length of query: 380
length of database: 18,247,518
effective HSP length: 104
effective length of query: 276
effective length of database: 14,309,454
effective search space: 3949409304
effective search space used: 3949409304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.