Guide to the Human Genome
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Name: TRA2B Sequence: fasta or formatted (288aa) NCBI GI: 4759098
Description:

splicing factor, arginine/serine-rich 10

Referenced in:

Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         12           2
 C cysteine            0.7          2           2
 D aspartate           6.6         19           2
 E glutamate           3.8         11           1
 F phenylalanine       2.1          6           1
 G glycine             9.4         27           8
 H histidine           3.1          9           1
 I isoleucine          2.1          6           1
 K lysine              2.4          7           1
 L leucine             1.7          5           1
 M methionine          1.4          4           1
 N asparagine          2.1          6           1
 P proline             4.2         12           1
 Q glutamine           1.7          5           2
 R arginine           22.2         64           3
 S serine             18.1         52           2
 T threonine           3.1          9           2
 V valine              2.8          8           1
 W tryptophan          0.3          1           1
 Y tyrosine            8.0         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   splicing factor, arginine/serine-rich 10 
TRA2A                 0.586   transformer-2 alpha 
CIRBP                 0.145   cold inducible RNA binding protein 
RBM3                  0.111   RNA binding motif protein 3 
FUSIP1                0.106   FUS interacting protein (serine-arginine rich) 1 iso...
FUSIP1                0.104   FUS interacting protein (serine-arginine rich) 1 isof...
LOC653884             0.102   PREDICTED: similar to FUS interacting protein (seri...
SFRS2                 0.101   splicing factor, arginine/serine-rich 2 
RNPS1                 0.101   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.101   RNA-binding protein S1, serine-rich domain 
LOC643446             0.097   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.097   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.097   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.097   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.097   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.097   PREDICTED: similar to ribonucleic acid binding prote...
RBM23                 0.097   RNA binding motif protein 23 isoform 1 
RBM23                 0.097   RNA binding motif protein 23 isoform 2 
RBM39                 0.095   RNA binding motif protein 39 isoform b 
RBM39                 0.095   RNA binding motif protein 39 isoform a 
RBMX                  0.088   RNA binding motif protein, X-linked 
RBMXL1                0.086   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.086   RNA binding motif protein, X-linked-like 1 
RBMXL2                0.086   testes-specific heterogenous nuclear ribonucleoprot...
RBM23                 0.085   RNA binding motif protein 23 isoform 3 
CHERP                 0.085   calcium homeostasis endoplasmic reticulum protein [...
SFRS4                 0.085   splicing factor, arginine/serine-rich 4 
SFRS2B                0.085   splicing factor, arginine/serine-rich 2B 
RBMY1E                0.081   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1B                0.081   RNA binding motif protein, Y-linked, family 1, membe...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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