Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: A2BP1 Sequence: fasta or formatted (418aa) NCBI GI: 22538405
Description:

ataxin 2-binding protein 1 isoform 1

Referenced in:

Cerebellum
Gene Structure
RNA-binding Proteins

Other entries for this name:
alt prot [370aa] ataxin 2-binding protein 1 isoform 5
alt prot [397aa] ataxin 2-binding protein 1 isoform 4
alt prot [397aa] ataxin 2-binding protein 1 isoform 4
alt prot [392aa] ataxin 2-binding protein 1 isoform 2
alt prot [395aa] ataxin 2-binding protein 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.4         60           4
 C cysteine            0.2          1           1
 D aspartate           3.6         15           2
 E glutamate           3.8         16           1
 F phenylalanine       3.3         14           1
 G glycine             8.1         34           2
 H histidine           2.6         11           2
 I isoleucine          2.4         10           2
 K lysine              2.6         11           2
 L leucine             5.5         23           2
 M methionine          1.9          8           1
 N asparagine          4.5         19           2
 P proline            10.5         44           4
 Q glutamine           5.5         23           1
 R arginine            4.5         19           1
 S serine              5.7         24           2
 T threonine           7.4         31           2
 V valine              6.2         26           2
 W tryptophan          0.2          1           1
 Y tyrosine            6.7         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ataxin 2-binding protein 1 isoform 1 
A2BP1                 0.923   ataxin 2-binding protein 1 isoform 2 
A2BP1                 0.906   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.906   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.839   ataxin 2-binding protein 1 isoform 3 
A2BP1                 0.825   ataxin 2-binding protein 1 isoform 5 
HRNBP3                0.519   hexaribonucleotide binding protein 3 
RBM9                  0.510   RNA binding motif protein 9 isoform 5 
RBM9                  0.502   RNA binding motif protein 9 isoform 6 
RBM9                  0.502   RNA binding motif protein 9 isoform 1 
RBM9                  0.499   RNA binding motif protein 9 isoform 3 
RBM9                  0.406   RNA binding motif protein 9 isoform 2 
RBM9                  0.400   RNA binding motif protein 9 isoform 4 
DAZAP1                0.046   DAZ associated protein 1 isoform a 
DAZAP1                0.046   DAZ associated protein 1 isoform b 
BOLL                  0.044   boule isoform 1 
BOLL                  0.043   boule isoform 2 
SFPQ                  0.042   splicing factor proline/glutamine rich (polypyrimidin...
PABPC4                0.041   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.041   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.041   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC3                0.041   poly(A) binding protein, cytoplasmic 3 
TRA2B                 0.041   splicing factor, arginine/serine-rich 10 
PABPC1                0.041   poly(A) binding protein, cytoplasmic 1 
RBM39                 0.038   RNA binding motif protein 39 isoform b 
RBM39                 0.038   RNA binding motif protein 39 isoform a 
DAZ1                  0.038   deleted in azoospermia 
DAZ4                  0.038   deleted in azoospermia 4 isoform 1 
BRUNOL5               0.038   bruno-like 5, RNA binding protein isoform 1 
TIA1                  0.037   TIA1 protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press