Guide to the Human Genome
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Name: RBM9 Sequence: fasta or formatted (380aa) NCBI GI: 72534682
Description:

RNA binding motif protein 9 isoform 1

Referenced in:

RNA-binding Proteins

Other entries for this name:
alt prot [376aa] RNA binding motif protein 9 isoform 3
alt prot [370aa] RNA binding motif protein 9 isoform 4
alt prot [451aa] RNA binding motif protein 9 isoform 5
alt prot [450aa] RNA binding motif protein 9 isoform 6
alt prot [367aa] RNA binding motif protein 9 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         50           8
 C cysteine            0.0          0           0
 D aspartate           3.7         14           1
 E glutamate           3.9         15           1
 F phenylalanine       3.9         15           1
 G glycine            10.8         41           2
 H histidine           1.8          7           1
 I isoleucine          2.9         11           2
 K lysine              3.2         12           3
 L leucine             4.7         18           1
 M methionine          1.6          6           1
 N asparagine          3.9         15           2
 P proline             8.2         31           4
 Q glutamine           5.0         19           2
 R arginine            5.0         19           1
 S serine              6.6         25           2
 T threonine           8.4         32           3
 V valine              6.6         25           2
 W tryptophan          0.3          1           1
 Y tyrosine            6.3         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 9 isoform 1 
RBM9                  0.981   RNA binding motif protein 9 isoform 3 
RBM9                  0.980   RNA binding motif protein 9 isoform 6 
RBM9                  0.975   RNA binding motif protein 9 isoform 5 
RBM9                  0.783   RNA binding motif protein 9 isoform 4 
RBM9                  0.759   RNA binding motif protein 9 isoform 2 
A2BP1                 0.584   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.584   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.578   ataxin 2-binding protein 1 isoform 2 
A2BP1                 0.573   ataxin 2-binding protein 1 isoform 5 
A2BP1                 0.560   ataxin 2-binding protein 1 isoform 1 
A2BP1                 0.491   ataxin 2-binding protein 1 isoform 3 
HRNBP3                0.487   hexaribonucleotide binding protein 3 
DAZ1                  0.052   deleted in azoospermia 
DAZ4                  0.052   deleted in azoospermia 4 isoform 1 
RBM24                 0.048   RNA binding motif protein 24 isoform 1 
SLTM                  0.047   modulator of estrogen induced transcription isoform ...
SLTM                  0.047   modulator of estrogen induced transcription isoform ...
RBM39                 0.047   RNA binding motif protein 39 isoform b 
RBM39                 0.047   RNA binding motif protein 39 isoform a 
BOLL                  0.046   boule isoform 1 
PABPC3                0.046   poly(A) binding protein, cytoplasmic 3 
PABPC4                0.046   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.046   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.046   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC1                0.046   poly(A) binding protein, cytoplasmic 1 
BOLL                  0.044   boule isoform 2 
TRA2B                 0.044   splicing factor, arginine/serine-rich 10 
DAZAP1                0.043   DAZ associated protein 1 isoform a 
DAZAP1                0.043   DAZ associated protein 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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