Guide to the Human Genome
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Name: RBM9 Sequence: fasta or formatted (367aa) NCBI GI: 7657504
Description:

RNA binding motif protein 9 isoform 2

Referenced in:

RNA-binding Proteins

Other entries for this name:
alt prot [376aa] RNA binding motif protein 9 isoform 3
alt prot [370aa] RNA binding motif protein 9 isoform 4
alt prot [451aa] RNA binding motif protein 9 isoform 5
alt prot [450aa] RNA binding motif protein 9 isoform 6
alt prot [380aa] RNA binding motif protein 9 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         31           3
 C cysteine            0.3          1           1
 D aspartate           3.5         13           1
 E glutamate           4.9         18           1
 F phenylalanine       3.5         13           1
 G glycine             8.7         32           2
 H histidine           1.9          7           1
 I isoleucine          3.3         12           2
 K lysine              3.3         12           3
 L leucine             7.1         26           3
 M methionine          3.0         11           1
 N asparagine          4.1         15           2
 P proline            10.6         39           4
 Q glutamine           6.5         24           2
 R arginine            4.4         16           1
 S serine              5.7         21           2
 T threonine          10.4         38           3
 V valine              6.8         25           2
 W tryptophan          0.5          2           1
 Y tyrosine            3.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 9 isoform 2 
RBM9                  0.982   RNA binding motif protein 9 isoform 4 
RBM9                  0.793   RNA binding motif protein 9 isoform 3 
RBM9                  0.784   RNA binding motif protein 9 isoform 1 
RBM9                  0.773   RNA binding motif protein 9 isoform 5 
RBM9                  0.765   RNA binding motif protein 9 isoform 6 
A2BP1                 0.467   ataxin 2-binding protein 1 isoform 3 
A2BP1                 0.467   ataxin 2-binding protein 1 isoform 2 
A2BP1                 0.467   ataxin 2-binding protein 1 isoform 1 
A2BP1                 0.461   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.461   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.454   ataxin 2-binding protein 1 isoform 5 
HRNBP3                0.394   hexaribonucleotide binding protein 3 
DAZ1                  0.050   deleted in azoospermia 
DAZ4                  0.050   deleted in azoospermia 4 isoform 1 
SLTM                  0.050   modulator of estrogen induced transcription isoform ...
SLTM                  0.050   modulator of estrogen induced transcription isoform ...
DAZAP1                0.048   DAZ associated protein 1 isoform a 
DAZAP1                0.048   DAZ associated protein 1 isoform b 
RBM39                 0.048   RNA binding motif protein 39 isoform b 
RBM39                 0.048   RNA binding motif protein 39 isoform a 
BOLL                  0.048   boule isoform 1 
PABPC3                0.047   poly(A) binding protein, cytoplasmic 3 
PABPC4                0.047   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.047   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.047   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC1                0.047   poly(A) binding protein, cytoplasmic 1 
BOLL                  0.046   boule isoform 2 
TRA2B                 0.046   splicing factor, arginine/serine-rich 10 
RBM23                 0.046   RNA binding motif protein 23 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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