Guide to the Human Genome
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Name: RBM9 Sequence: fasta or formatted (370aa) NCBI GI: 133925801
Description:

RNA binding motif protein 9 isoform 4

Referenced in:

RNA-binding Proteins

Other entries for this name:
alt prot [376aa] RNA binding motif protein 9 isoform 3
alt prot [451aa] RNA binding motif protein 9 isoform 5
alt prot [450aa] RNA binding motif protein 9 isoform 6
alt prot [380aa] RNA binding motif protein 9 isoform 1
alt prot [367aa] RNA binding motif protein 9 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         31           3
 C cysteine            0.3          1           1
 D aspartate           3.5         13           1
 E glutamate           4.9         18           1
 F phenylalanine       3.5         13           1
 G glycine             8.6         32           2
 H histidine           1.9          7           1
 I isoleucine          3.0         11           2
 K lysine              3.2         12           3
 L leucine             7.6         28           3
 M methionine          3.0         11           1
 N asparagine          4.1         15           2
 P proline            10.8         40           4
 Q glutamine           6.2         23           2
 R arginine            4.3         16           1
 S serine              5.9         22           2
 T threonine          10.3         38           3
 V valine              7.0         26           2
 W tryptophan          0.5          2           1
 Y tyrosine            3.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 9 isoform 4 
RBM9                  0.975   RNA binding motif protein 9 isoform 2 
RBM9                  0.804   RNA binding motif protein 9 isoform 1 
RBM9                  0.786   RNA binding motif protein 9 isoform 3 
RBM9                  0.784   RNA binding motif protein 9 isoform 6 
RBM9                  0.777   RNA binding motif protein 9 isoform 5 
A2BP1                 0.457   ataxin 2-binding protein 1 isoform 3 
A2BP1                 0.457   ataxin 2-binding protein 1 isoform 2 
A2BP1                 0.457   ataxin 2-binding protein 1 isoform 1 
A2BP1                 0.451   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.451   ataxin 2-binding protein 1 isoform 4 
A2BP1                 0.441   ataxin 2-binding protein 1 isoform 5 
HRNBP3                0.386   hexaribonucleotide binding protein 3 
DAZ1                  0.054   deleted in azoospermia 
DAZ4                  0.054   deleted in azoospermia 4 isoform 1 
DAZAP1                0.048   DAZ associated protein 1 isoform a 
DAZAP1                0.048   DAZ associated protein 1 isoform b 
SLTM                  0.048   modulator of estrogen induced transcription isoform ...
SLTM                  0.048   modulator of estrogen induced transcription isoform ...
RBM39                 0.048   RNA binding motif protein 39 isoform b 
RBM39                 0.048   RNA binding motif protein 39 isoform a 
BOLL                  0.047   boule isoform 1 
PABPC3                0.047   poly(A) binding protein, cytoplasmic 3 
PABPC4                0.047   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.047   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.047   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC1                0.047   poly(A) binding protein, cytoplasmic 1 
BOLL                  0.045   boule isoform 2 
TRA2B                 0.045   splicing factor, arginine/serine-rich 10 
DAZ4                  0.044   deleted in azoospermia 4 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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